Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TBC1D10B Gene 0 30.02 45.11 75.24 31.18 32.65 41.15 38.68 44.88 44.44 79.98 86.57 22.46 25.89 87.91 87.47 77.67 68.68 100.04 54.10 58.24 74.53 36.29 39.50 2 409939 Transcript 1 0.00 0.00 0.02 0.00 0.00 1.66 0.00 1.22 0.44 1.77 31.05 0.00 0.00 2.94 5.49 19.09 14.34 10.36 20.26 0.00 19.90 0.00 7.20 3 305663 Transcript 0 4.23 2.03 0.00 1.36 5.35 0.00 0.00 1.73 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.54 0.00 4.26 0.00 0.00 0.00 4 478158 Transcript 0 13.53 10.87 11.67 11.10 17.08 12.65 18.15 14.78 14.60 16.97 12.14 13.33 17.24 16.15 20.27 25.29 15.01 22.40 11.83 15.96 13.94 9.64 12.15 5 464644 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 490703 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 475872 Transcript 0 14.19 10.96 25.64 13.07 10.46 10.80 11.88 24.02 15.01 36.34 19.91 2.52 2.27 13.57 23.05 18.44 21.65 34.40 19.88 20.27 18.81 13.37 6.65 8 380442 Transcript 0 0.00 0.00 66.26 15.90 0.00 0.00 0.00 24.48 24.55 73.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39.86 0.00 0.00 0.00 0.00 0.00 9 475650 Transcript 0 7.30 5.84 16.64 7.81 7.53 12.88 9.57 9.81 5.18 29.35 11.14 6.43 3.96 9.86 17.73 12.88 11.25 14.88 11.84 10.47 10.37 8.48 6.36 10 ER1a ExonRegion 1 0.00 0.00 0.02 0.00 0.00 1.66 0.00 1.22 0.44 1.77 31.05 0.00 0.00 2.94 5.49 19.09 14.34 10.36 20.26 0.00 19.90 0.00 7.20 11 E1_Ab KnownBoundary 0 0.00 0.00 1.12 0.00 0.00 0.00 0.00 4.31 5.58 8.38 46.70 0.00 0.00 4.77 4.45 38.54 32.91 47.96 41.79 0.00 30.89 0.00 37.22 12 ER1b ExonRegion 0 10.62 37.25 96.09 25.65 26.30 43.67 37.73 50.21 56.05 120.13 159.27 20.29 30.05 159.18 112.15 108.54 131.02 163.37 75.12 83.49 146.36 48.98 58.00 13 E1_Da NovelBoundary 0 0.00 9.67 16.06 3.00 3.74 0.00 13.29 9.00 9.11 13.81 14.06 0.00 6.66 11.77 10.14 20.34 8.32 27.90 13.46 6.20 17.30 2.63 23.73 14 E1a_E2c KnownJunction 0 44.16 63.80 154.16 57.54 64.26 79.73 65.45 94.10 78.82 180.27 194.52 55.22 60.39 193.18 202.24 133.13 176.72 288.14 111.81 136.08 174.52 80.46 92.53 15 E1a_E5c NovelJunction 0 0.00 2.57 3.02 2.60 0.00 0.00 1.81 0.00 3.59 1.67 0.00 0.00 0.00 4.94 6.30 3.93 0.00 6.59 4.52 6.33 12.05 0.00 12.46 16 I1 Intron 0 12.23 7.47 9.57 7.02 15.03 10.40 13.95 12.94 17.10 20.50 22.35 9.92 7.53 26.49 16.47 33.88 22.30 34.39 13.25 20.11 22.25 11.71 13.64 17 I1_AR1 ActiveIntronRegion 0 5.11 3.82 2.94 3.82 12.93 3.94 10.31 2.07 9.87 10.09 10.38 0.00 2.07 18.82 17.99 16.75 15.97 18.49 8.57 10.28 17.15 7.27 7.87 18 I1_SR1 SilentIntronRegion 0 0.55 1.96 2.45 0.96 7.33 3.26 2.80 6.66 5.81 4.59 7.02 3.05 0.00 5.11 5.91 12.66 6.48 8.21 0.00 6.30 16.49 3.63 1.96 19 I1_AR2 ActiveIntronRegion 1 11.59 8.62 7.06 9.07 10.61 11.57 12.29 11.13 16.79 23.88 18.27 7.03 3.09 21.74 12.70 44.22 16.61 45.34 7.88 21.69 27.85 10.94 17.41 20 I1_SR2 SilentIntronRegion 0 17.09 8.68 15.43 7.30 20.39 13.08 17.95 20.22 21.73 23.87 32.75 17.68 14.46 35.81 19.74 35.05 31.35 34.80 21.04 24.58 20.50 15.11 14.12 21 E2_Aa NovelBoundary 1 50.75 23.61 13.07 13.62 39.13 26.52 30.30 30.31 20.23 31.80 23.69 17.41 45.94 43.79 19.41 59.73 38.80 36.93 17.88 29.59 53.81 17.94 22.28 22 ER2a ExonRegion 0 27.06 21.75 23.34 22.19 34.15 25.30 36.30 29.56 29.21 32.73 24.28 26.67 34.47 32.30 34.24 46.40 30.01 44.80 23.66 31.93 27.89 19.29 24.30 23 E2_Ab KnownBoundary 0 50.45 24.54 25.52 17.08 42.19 48.10 47.03 35.12 30.79 37.93 26.32 38.11 12.50 16.60 30.53 34.52 20.94 22.92 29.18 32.60 19.34 34.11 11.95 24 ER2b ExonRegion 0 35.83 26.15 22.65 16.35 33.15 24.16 25.59 35.77 23.17 32.56 24.39 33.22 12.35 23.84 32.23 39.18 23.04 35.02 22.31 24.79 35.11 22.64 16.37 25 E2_Ac KnownBoundary 0 43.64 28.09 30.01 4.46 46.43 15.10 24.91 24.07 20.75 31.75 15.79 18.76 6.82 34.02 15.33 51.95 18.23 27.65 4.80 38.93 34.90 11.45 8.37 26 ER2c ExonRegion 0 39.06 79.15 158.36 39.45 50.81 68.22 70.54 82.84 94.34 188.13 212.17 35.64 48.13 206.57 187.09 127.68 148.91 197.26 101.06 159.53 198.58 86.98 68.11 27 E2_Da NovelBoundary 0 6.74 3.29 9.28 7.52 0.00 0.00 21.33 6.08 9.14 5.40 2.16 0.00 0.00 8.95 13.35 8.54 7.85 12.81 4.80 3.26 2.47 3.12 8.11 28 E2a_E3a KnownJunction 0 39.64 59.20 198.37 58.47 35.23 69.16 64.17 128.81 109.98 228.92 157.93 51.92 25.97 219.32 196.06 148.94 157.36 224.97 127.63 145.60 177.42 55.72 95.18 29 E3_Aa NovelBoundary 0 10.45 16.71 13.13 5.99 4.07 20.10 19.52 5.96 5.67 10.88 2.00 0.00 0.00 0.00 0.00 8.54 7.85 16.66 4.14 6.07 5.99 5.51 16.39 30 ER3a ExonRegion 0 41.76 84.15 195.33 65.95 74.20 144.07 91.12 127.28 121.72 232.69 282.70 50.71 62.10 256.04 244.05 199.74 245.43 314.75 186.43 154.67 223.13 105.97 131.99 31 E3a_E4a KnownJunction 0 72.53 138.07 223.85 71.52 144.23 210.62 150.46 137.68 145.08 243.77 401.42 125.44 92.53 297.13 268.37 247.37 315.38 350.03 238.03 182.99 268.30 115.12 137.01 32 E3a_E5c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.21 0.00 0.00 0.00 0.00 6.30 4.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 ER4a ExonRegion 0 28.62 80.56 169.51 53.19 69.39 98.99 76.89 74.32 101.28 184.71 229.80 27.88 38.48 225.59 187.33 168.88 186.39 210.40 142.27 138.79 174.98 71.17 98.06 34 E4_Da NovelBoundary 0 3.63 2.50 6.27 5.26 4.24 13.00 12.19 15.53 13.02 7.12 12.63 0.00 6.82 4.59 10.88 10.77 17.67 10.69 21.93 9.46 10.93 8.14 8.45 35 E4a_E5c KnownJunction 1 50.60 111.30 217.91 65.16 107.13 122.37 131.47 115.42 132.84 213.42 242.69 42.31 19.15 291.48 215.47 206.95 211.41 304.77 200.57 127.96 209.86 81.87 147.08 36 I4 Intron 0 14.78 10.65 15.14 8.86 16.92 12.91 14.73 11.52 6.32 20.98 6.01 13.53 9.38 9.04 14.25 15.24 10.44 14.83 10.42 13.00 9.37 5.00 6.89 37 I4_SR1 SilentIntronRegion 0 11.46 9.38 13.32 7.43 15.25 11.60 13.66 10.32 4.92 14.47 4.87 13.38 8.81 7.98 14.26 15.30 9.54 10.90 8.48 12.30 7.98 4.75 5.50 38 I4_AR1 ActiveIntronRegion 0 25.79 14.92 21.25 13.63 22.56 17.29 18.38 15.56 11.00 42.50 9.81 14.16 11.32 12.58 14.36 15.19 13.51 27.87 16.89 15.39 14.02 5.88 11.49 39 E5_Aa NovelBoundary 0 25.19 12.23 21.64 24.84 24.45 10.68 12.28 15.90 9.55 36.53 31.43 24.31 19.80 9.48 15.20 16.41 29.83 45.35 33.41 9.20 14.95 14.76 17.41 40 ER5a ExonRegion 0 14.19 10.96 25.64 13.07 10.46 10.80 11.88 24.02 15.01 36.34 19.91 2.52 2.27 13.57 23.05 18.44 21.65 34.40 19.88 20.27 18.81 13.37 6.65 41 E5_Ac KnownBoundary 0 17.71 6.25 23.15 15.95 4.24 5.45 18.99 22.26 13.72 32.13 14.00 6.30 0.00 7.36 19.66 7.69 9.44 17.20 14.21 8.88 21.07 8.82 8.45 42 E5_Ad KnownBoundary 0 98.31 91.63 193.58 63.10 114.94 127.65 87.93 100.67 99.56 184.73 259.43 35.41 45.78 225.21 269.11 228.91 202.99 268.41 245.28 120.04 211.28 109.61 97.66 43 ER5b ExonRegion 1 71.96 111.85 221.79 74.96 101.68 135.70 120.48 126.18 130.92 243.14 295.73 30.31 28.14 310.21 281.42 231.83 257.47 293.79 245.27 140.43 229.19 106.26 158.58 44 ER5c ExonRegion 1 77.17 114.35 221.23 77.06 111.97 138.80 118.85 126.31 133.39 246.14 305.55 39.30 28.14 313.58 283.88 251.26 255.69 308.57 256.79 141.08 250.38 109.63 153.83 45 ER5d ExonRegion 0 79.72 102.70 228.74 78.14 104.35 149.15 106.58 130.79 136.07 252.51 305.72 43.29 42.21 312.64 322.52 259.57 240.42 323.97 264.92 156.38 254.16 120.50 146.83 46 ER5e ExonRegion 1 65.64 80.78 193.91 68.39 63.73 131.78 89.96 127.19 110.29 235.45 301.24 31.69 51.53 266.72 244.67 228.07 204.88 288.63 164.98 154.93 229.22 106.87 93.20 47 E5_Db NovelBoundary 0 81.20 66.76 154.87 55.54 62.39 137.19 96.54 115.79 83.39 218.58 232.85 28.66 56.98 188.59 221.03 221.91 171.76 224.72 106.73 122.85 134.49 74.22 71.11 48 E5_Dc NovelBoundary 0 6.67 3.09 29.24 1.96 0.00 16.52 8.48 2.14 6.42 21.03 12.63 0.00 0.00 7.89 37.58 4.27 22.25 10.16 3.86 12.85 8.90 5.82 3.59 49 E5c_E6b KnownJunction 1 56.31 178.39 230.98 91.70 108.06 152.58 74.28 166.80 130.21 259.70 243.17 12.00 26.46 268.76 285.31 271.38 158.20 267.91 172.62 180.63 228.33 92.16 98.51 50 ER5f ExonRegion 1 56.96 116.71 182.47 69.33 78.64 143.91 76.44 140.46 108.85 232.22 253.55 17.88 26.51 263.88 243.71 267.88 162.17 267.84 139.05 156.52 205.33 80.17 91.80 51 E6_Aa NovelBoundary 0 6.89 9.47 18.30 5.46 15.96 7.50 13.65 21.85 9.64 29.09 6.11 0.00 0.00 16.72 24.11 16.32 7.29 42.12 8.09 19.75 14.83 0.00 8.11 52 ER6a ExonRegion 0 4.62 4.12 10.47 4.28 1.26 9.53 11.09 6.03 2.66 18.78 13.05 2.77 2.41 12.50 18.74 10.61 8.53 11.81 16.28 11.23 9.61 8.19 5.30 53 E6_Ab KnownBoundary 0 10.15 3.09 21.17 6.69 0.00 18.51 20.71 12.77 2.92 36.34 20.79 0.00 6.82 16.07 10.75 20.68 20.66 17.12 22.21 15.98 11.06 3.12 0.00 54 ER6b ExonRegion 0 56.40 132.31 243.49 87.87 89.41 138.64 91.54 153.19 132.59 277.09 320.30 57.88 50.51 309.56 279.10 268.95 174.39 310.96 182.40 184.52 273.09 119.27 95.69 55 E6_Da KnownBoundary 0 6.15 9.27 22.83 6.73 16.89 5.56 9.89 11.25 2.63 41.69 7.05 0.00 0.00 9.48 36.34 16.15 4.58 22.51 7.72 18.28 25.45 8.57 7.43 56 E6a_E6c KnownJunction 0 81.27 154.12 234.23 98.69 68.59 143.72 127.14 129.88 118.69 247.94 379.10 63.32 102.10 302.84 292.48 243.53 260.03 311.40 189.84 162.54 291.16 147.88 125.83 57 E6a_E6d KnownJunction 0 13.56 12.43 1.18 0.00 0.00 13.91 17.31 2.01 6.71 14.08 7.26 0.00 0.00 9.42 4.45 0.00 7.95 0.00 12.24 2.75 7.66 6.06 4.35 58 ER6c ExonRegion 0 8.63 7.65 15.53 7.29 13.21 16.46 7.08 10.80 5.27 40.15 12.25 2.84 6.04 9.26 17.01 14.39 13.71 15.11 5.69 11.70 13.97 8.18 7.17 59 E6_Ac KnownBoundary 0 12.52 12.10 19.22 5.26 22.41 7.84 8.17 11.46 5.79 51.98 13.21 6.30 0.00 11.77 15.20 29.39 8.79 13.89 0.00 0.00 16.80 11.76 11.52 60 ER6d ExonRegion 0 57.82 118.15 218.33 79.90 66.54 116.59 90.79 132.56 113.89 220.82 291.07 42.33 52.19 271.95 294.24 213.54 176.66 272.97 141.86 172.90 215.67 100.97 101.23 61 E6_Db KnownBoundary 0 13.63 6.64 18.45 11.62 25.64 18.85 6.05 10.97 16.72 34.63 8.58 17.11 5.68 13.19 25.22 25.21 4.77 13.39 13.18 19.05 7.48 8.57 0.00 62 E6b_E6d KnownJunction 1 58.97 128.73 258.21 105.98 167.06 182.68 118.71 152.84 120.98 198.48 380.31 81.33 26.13 372.95 267.51 204.56 250.96 317.74 200.29 242.44 255.39 140.65 124.20 63 ER6e ExonRegion 0 8.64 5.75 23.93 11.87 8.12 12.64 10.55 12.61 7.62 29.12 8.12 13.68 3.42 7.84 17.43 13.66 11.52 17.74 13.54 8.48 7.54 9.07 6.60 64 E6_Ad KnownBoundary 0 9.93 6.58 19.69 5.73 20.80 11.02 12.50 12.28 8.88 23.53 7.37 17.41 0.00 4.89 10.88 7.60 17.48 11.23 4.42 6.52 2.97 7.78 0.00 65 ER6f ExonRegion 0 61.53 95.83 271.37 114.02 132.68 134.94 89.84 142.11 134.24 231.45 348.82 63.36 49.87 319.52 297.56 203.48 219.71 355.80 156.39 221.64 238.05 125.62 117.97 66 E6_Dc KnownBoundary 0 75.79 84.59 325.45 137.28 126.74 95.57 64.65 148.24 149.13 237.86 307.24 64.37 82.79 305.20 291.37 203.96 161.29 376.56 181.75 233.17 223.76 105.20 100.05 67 ER6g ExonRegion 0 52.80 85.19 353.72 144.56 59.60 97.60 75.55 155.82 157.46 262.83 334.63 67.89 85.54 306.43 337.24 258.23 220.63 455.14 181.57 212.78 211.50 124.03 120.06 68 E6d_E7a KnownJunction 1 70.38 67.82 402.77 156.99 54.24 194.55 155.41 195.31 185.56 304.91 397.89 13.95 59.25 298.31 332.16 305.39 249.65 457.52 241.14 195.33 255.76 99.32 115.41 69 ER7a ExonRegion 0 53.00 70.86 253.71 84.52 38.96 98.01 69.65 101.95 109.42 210.87 205.12 51.57 55.86 230.27 248.51 198.19 144.61 216.85 143.85 134.89 157.01 85.11 93.01 70 E7_Da KnownBoundary 1 12.45 40.98 71.02 16.98 18.85 17.72 35.20 28.79 57.49 89.15 80.76 5.55 12.99 24.19 76.89 59.81 50.77 116.48 44.14 55.74 51.65 30.80 22.96 71 E7a_E7b KnownJunction 0 0.00 0.00 57.72 17.81 0.00 0.00 0.00 29.70 28.53 72.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.88 0.00 0.00 0.00 0.00 0.00 72 E7_Ab KnownBoundary 0 29.78 66.70 70.40 30.37 11.12 24.08 27.82 27.68 31.34 73.17 75.65 13.50 6.66 56.27 60.82 36.14 42.26 75.03 29.55 53.24 87.72 10.65 25.44 73 ER7b ExonRegion 1 44.09 87.78 137.85 43.61 30.77 49.51 49.43 55.02 78.64 141.45 144.32 15.15 38.30 175.13 189.55 107.49 101.23 106.86 56.27 106.03 145.81 45.49 52.37 74 ER7c ExonRegion 0 51.48 98.99 140.73 32.50 34.42 64.77 41.04 44.12 55.58 132.52 143.17 19.81 25.36 217.14 179.78 115.56 106.80 104.26 63.82 102.70 128.94 34.36 53.36 75 E7_Db KnownBoundary 0 16.52 71.83 86.96 23.74 23.17 43.55 21.82 22.92 18.95 75.70 59.70 13.05 12.34 76.23 70.83 93.57 59.93 90.99 60.71 47.68 62.46 30.98 18.18 76 E7b_E7c KnownJunction 0 0.00 0.00 74.81 13.98 0.00 0.00 0.00 19.26 20.57 74.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55.84 0.00 0.00 0.00 0.00 0.00 77 E7_Ac KnownBoundary 0 30.52 58.48 71.29 11.69 18.42 22.26 17.00 36.43 24.31 66.16 30.11 6.30 0.00 36.38 17.92 61.78 32.73 81.25 42.17 25.69 43.24 11.08 22.71 78 ER7d ExonRegion 0 52.49 113.07 129.64 22.08 51.37 52.81 43.16 34.57 51.38 127.77 109.40 26.84 23.45 193.27 153.77 137.91 99.69 111.97 75.81 67.66 102.25 40.00 49.92 79 ER7e ExonRegion 1 127.72 229.96 265.24 96.55 94.52 121.12 98.50 106.39 117.83 209.71 208.21 29.59 24.03 219.27 279.35 196.22 147.49 250.72 156.21 133.72 170.29 88.71 100.21 80 E7_Dc KnownBoundary 1 160.62 208.52 430.62 197.24 164.01 228.33 159.60 180.36 185.59 288.20 268.49 37.51 19.64 224.85 340.19 281.04 215.80 349.74 199.54 209.71 200.65 116.10 152.46 81 ER7f ExonRegion 1 48.19 135.19 176.00 84.90 45.86 48.44 63.60 83.66 87.15 138.13 122.18 15.07 9.41 106.27 194.52 119.74 100.33 156.98 95.69 88.77 100.74 77.17 67.56 82 E7_Dd KnownBoundary 1 110.02 265.15 131.16 85.04 63.58 27.31 65.14 84.98 71.73 120.05 74.91 24.76 0.00 76.17 185.92 150.56 83.50 215.47 154.55 91.34 58.87 96.44 107.81 83 ER7g ExonRegion 0 24.48 35.05 6.16 3.17 4.51 8.49 10.99 2.29 2.01 3.63 1.27 1.30 0.33 3.59 8.43 8.49 1.31 10.60 6.79 3.67 1.87 3.46 5.19 84 ER7h ExonRegion 0 4.23 2.03 0.00 1.36 5.35 0.00 0.00 1.73 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.54 0.00 4.26 0.00 0.00 0.00 85 ER7i ExonRegion 0 4.23 2.03 0.00 1.36 5.35 0.00 0.00 1.73 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.54 0.00 4.26 0.00 0.00 0.00 86 IG14 Intergenic 0 3.88 1.32 6.43 2.10 4.51 6.24 3.88 3.12 4.30 11.63 7.66 6.78 3.75 9.85 22.57 14.60 11.62 8.53 7.54 8.56 3.78 3.70 3.91 87 IG14_AR2 ActiveIntergenicRegion 0 5.45 1.78 7.60 2.68 5.71 7.81 5.25 2.65 4.77 17.05 8.22 11.05 6.15 13.94 33.04 15.80 14.24 8.91 7.88 11.25 3.91 4.34 3.59 88 IG14_SR2 SilentIntergenicRegion 0 1.86 0.84 6.29 2.24 4.71 4.21 3.12 3.98 4.05 9.90 8.75 3.81 1.95 7.32 19.28 17.06 6.33 7.14 3.13 6.62 2.15 4.32 3.07 89 IG14_AR1 ActiveIntergenicRegion 0 3.46 0.00 4.90 4.09 9.97 5.50 3.97 11.31 2.47 13.66 5.80 0.00 0.00 3.69 8.44 27.83 3.30 8.90 5.79 3.68 3.61 2.65 5.34 90 IG14_SR1 SilentIntergenicRegion 0 2.87 0.99 5.06 1.28 2.82 5.23 2.50 3.18 3.88 5.58 6.50 2.90 1.64 6.00 11.17 11.73 10.97 8.73 9.23 6.18 4.39 2.63 4.69