Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 COG7 Gene 0 61.83 51.47 83.80 46.66 43.33 60.98 31.82 47.69 47.07 61.37 76.14 38.23 36.56 102.20 96.23 91.90 73.30 75.46 71.35 46.84 113.63 88.36 97.00 2 307149 Transcript 0 75.16 52.56 91.43 53.08 49.25 65.07 36.01 52.55 54.42 69.15 85.25 44.08 38.86 114.96 93.11 112.05 81.73 84.84 88.56 49.19 126.24 107.13 113.20 3 429391 Transcript 0 0.00 0.00 0.00 3.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 2.62 0.00 0.00 0.00 4 IG49_SR2 SilentIntergenicRegion 0 65.12 44.05 23.86 21.05 45.56 17.31 24.89 19.97 22.34 20.31 12.06 36.52 11.12 9.91 14.98 22.06 15.86 7.60 14.50 17.04 2.60 16.16 11.39 5 ER1a ExonRegion 1 16.62 14.19 24.79 11.04 11.11 25.01 11.33 12.68 17.81 23.55 39.78 4.21 4.08 48.98 53.48 49.09 37.22 43.81 23.51 42.06 84.03 35.21 71.41 6 E1a_E2a KnownJunction 0 7.04 17.76 46.07 22.24 38.20 64.68 35.51 26.41 42.56 33.55 30.01 0.00 6.82 67.87 42.52 46.74 56.01 34.82 4.80 35.73 101.38 44.09 63.51 7 E2_Aa NovelBoundary 0 32.01 15.59 0.00 2.06 11.21 2.61 6.14 0.00 2.75 3.84 0.00 0.00 0.00 9.42 4.45 8.37 0.00 2.24 3.58 8.82 3.15 0.00 15.71 8 ER2a ExonRegion 0 43.17 47.77 52.29 41.23 46.69 55.89 43.50 41.38 37.88 57.95 77.58 34.61 32.80 115.55 79.27 87.55 80.09 70.91 67.51 48.62 120.23 93.80 91.25 9 E2a_E3a KnownJunction 0 54.60 49.27 81.43 59.97 66.04 41.51 45.49 48.92 46.15 72.53 92.02 37.36 32.30 96.47 95.56 99.29 100.70 55.88 82.07 61.04 86.86 127.98 87.58 10 ER3a ExonRegion 0 33.00 35.25 68.52 56.23 40.34 47.19 34.08 49.96 44.71 68.50 94.41 62.13 31.99 112.26 55.32 90.15 87.54 76.64 94.72 44.48 108.90 81.45 137.65 11 E3a_E4a KnownJunction 0 24.23 40.78 85.45 50.64 29.71 50.82 16.87 58.98 52.08 79.11 100.34 45.61 48.70 96.12 81.83 153.29 112.95 68.03 158.31 44.87 99.28 109.12 163.81 12 ER4a ExonRegion 0 23.48 32.86 61.39 48.55 30.00 40.42 35.61 40.65 42.12 68.67 88.31 76.11 33.02 114.64 80.14 99.35 97.03 73.26 90.70 43.70 127.07 94.17 97.38 13 E4a_E5a KnownJunction 0 39.12 37.36 77.11 48.88 46.10 50.65 39.83 41.81 47.31 65.09 69.86 47.72 39.93 80.23 45.00 113.73 84.53 92.65 92.99 53.75 139.68 106.79 95.35 14 ER5a ExonRegion 0 28.20 40.43 61.84 37.60 33.46 68.34 43.99 43.84 41.79 57.87 76.31 49.45 24.64 114.14 73.51 101.63 87.57 79.39 92.95 48.14 123.73 94.81 90.61 15 E5a_E6a KnownJunction 1 45.49 29.40 43.35 32.36 19.52 65.08 37.27 20.91 41.32 48.65 86.86 54.17 5.84 143.86 47.96 99.03 85.09 65.12 83.86 50.30 141.66 68.34 69.23 16 ER6a ExonRegion 0 28.96 27.00 45.33 33.06 19.47 40.54 21.13 36.13 36.76 51.11 63.96 33.86 33.02 90.05 72.15 84.94 67.65 81.77 71.19 47.19 121.88 66.81 65.18 17 E6a_E7a KnownJunction 0 30.38 22.10 62.45 39.36 8.06 32.08 31.80 43.70 54.40 42.33 87.76 19.36 27.27 100.89 71.20 95.53 74.71 57.95 106.07 47.11 118.92 78.44 73.92 18 ER7a ExonRegion 0 23.35 27.93 41.59 20.98 23.84 40.32 18.19 30.10 33.27 38.55 58.05 13.08 19.66 77.60 65.91 65.10 56.98 60.55 50.73 37.61 90.76 58.08 72.35 19 E7_Da NovelBoundary 0 10.37 11.77 14.25 10.59 11.12 28.39 7.68 13.10 13.86 19.05 12.90 7.65 0.00 7.42 11.25 10.60 3.93 6.88 12.89 11.38 23.54 8.76 16.22 20 E7a_E8a KnownJunction 0 13.63 12.89 32.26 16.05 19.02 35.89 22.04 6.65 19.24 29.33 70.33 12.00 32.79 79.46 60.33 73.57 45.82 55.42 28.14 33.30 68.63 43.23 82.12 21 I7 Intron 0 24.13 17.20 16.08 15.85 23.27 14.87 15.44 14.31 12.92 14.86 8.22 11.03 10.03 7.76 11.84 12.31 12.16 12.53 15.97 13.22 15.99 16.30 30.27 22 I7_SR1 SilentIntronRegion 0 11.52 11.36 14.17 10.39 16.91 12.46 10.61 11.44 11.11 17.14 10.22 12.86 3.25 7.12 13.38 12.78 18.88 18.22 18.98 13.46 17.92 13.10 28.08 23 I7_AR1 ActiveIntronRegion 0 24.81 14.63 20.39 24.19 16.46 12.30 14.06 16.97 19.40 20.16 11.71 7.29 8.20 10.35 15.08 16.08 16.24 23.74 17.52 22.08 29.47 19.00 42.64 24 I7_SR2 SilentIntronRegion 0 31.52 28.53 14.86 16.36 35.45 17.14 19.37 12.71 6.06 10.65 3.02 11.07 15.81 5.03 8.78 6.18 5.42 3.19 9.38 7.55 5.72 19.12 14.24 25 I7_SR3 SilentIntronRegion 0 24.44 13.42 8.28 10.05 22.81 13.62 16.20 6.01 4.30 4.93 5.85 9.94 9.71 6.44 8.04 10.21 6.81 1.89 12.70 6.72 8.17 7.73 28.65 26 I7_AR3 ActiveIntronRegion 0 28.81 14.37 22.97 14.70 23.97 21.17 17.56 27.52 27.59 21.50 11.32 16.81 13.98 10.86 13.85 18.97 13.08 12.83 25.25 14.66 16.30 21.53 43.51 27 E8_Aa NovelBoundary 0 41.56 19.08 33.00 34.73 51.19 57.35 42.71 20.41 30.29 30.97 19.79 19.66 6.82 17.48 9.15 43.58 22.44 21.06 35.58 19.94 41.14 28.96 62.14 28 ER8a ExonRegion 0 46.51 33.47 60.54 23.36 26.46 48.31 25.44 27.75 37.95 53.65 71.61 42.11 34.96 96.09 103.70 92.76 74.37 68.48 52.86 49.52 97.82 71.39 86.08 29 E8_Da NovelBoundary 1 45.12 43.74 30.93 16.95 16.21 18.23 17.71 20.50 18.37 24.93 14.00 47.57 13.64 2.47 18.30 6.84 16.92 21.80 17.22 24.80 66.04 17.27 25.10 30 E8a_E9a KnownJunction 0 23.19 35.59 64.43 14.28 18.93 36.17 18.55 11.87 18.49 34.17 69.65 50.72 46.26 95.89 129.55 97.75 54.23 51.69 53.93 43.21 97.42 88.42 69.40 31 I8 Intron 0 22.58 21.80 21.03 22.10 21.73 24.43 17.99 11.76 15.63 17.32 12.51 11.18 12.90 6.59 13.95 16.40 12.61 14.82 16.40 17.84 19.52 26.76 32.26 32 I8_AR1 ActiveIntronRegion 0 20.78 16.64 12.95 7.75 19.70 22.01 7.94 7.02 14.55 12.58 12.11 14.10 5.12 4.77 12.61 21.89 12.60 18.29 14.77 14.51 25.24 21.02 34.42 33 I8_SR1 SilentIntronRegion 0 15.04 18.51 14.35 18.74 19.69 28.13 20.80 9.32 14.01 20.46 9.64 9.81 13.14 7.03 14.09 13.71 11.11 11.46 10.33 18.04 14.00 25.46 27.83 34 I8_AR2 ActiveIntronRegion 0 32.12 28.29 32.84 33.39 25.19 21.64 20.09 17.01 18.10 16.33 16.02 11.27 16.71 7.06 14.55 16.70 14.38 16.91 24.16 19.43 22.89 31.32 36.32 35 E9_Aa NovelBoundary 1 80.98 31.11 51.80 40.42 33.36 5.74 18.28 35.24 20.80 22.51 14.48 0.00 40.74 14.01 18.91 3.76 8.60 31.84 27.39 35.15 38.18 26.15 30.99 36 ER9a ExonRegion 0 57.69 63.47 86.59 47.04 54.88 68.69 42.55 51.53 51.87 67.71 95.37 49.41 41.64 107.75 120.56 108.61 98.66 122.43 84.53 72.92 140.55 95.49 108.26 37 E9a_E10a KnownJunction 0 92.61 49.60 139.59 75.28 61.71 82.45 35.07 64.12 61.89 74.19 140.88 102.33 101.94 115.66 116.32 121.16 91.63 100.23 85.18 56.76 158.95 95.95 166.29 38 ER10a ExonRegion 0 73.19 55.25 118.32 68.55 49.72 94.71 42.68 75.53 66.03 96.84 117.08 50.14 50.15 133.11 126.32 129.22 109.83 105.51 106.34 57.05 159.83 134.04 129.89 39 E10a_E11a KnownJunction 0 129.50 83.14 160.64 79.54 96.35 62.18 78.48 91.64 86.05 92.62 106.34 31.51 55.84 103.48 119.79 168.67 104.16 137.09 123.86 60.27 165.93 159.70 130.78 40 ER11a ExonRegion 0 143.70 98.75 138.11 73.58 46.22 66.66 52.08 85.30 72.63 98.23 111.64 54.38 67.29 159.14 76.84 134.92 83.62 119.80 101.35 49.94 153.96 137.58 141.23 41 E11a_E12a KnownJunction 0 177.36 134.32 147.66 75.12 71.39 81.15 57.28 95.74 69.30 115.13 105.34 82.08 33.93 150.69 101.12 153.98 98.36 106.78 129.23 53.95 157.96 171.09 172.01 42 ER12a ExonRegion 0 119.82 101.48 115.36 62.78 97.92 120.73 56.94 83.07 68.49 92.42 102.74 58.71 63.45 152.74 99.12 159.81 88.52 110.02 109.97 51.15 158.95 139.61 159.80 43 E12a_E13a KnownJunction 0 189.52 126.23 146.48 90.70 118.51 124.02 49.15 90.65 81.45 121.95 96.34 50.27 74.35 198.07 138.33 239.85 103.88 162.21 184.19 84.75 156.42 216.52 244.57 44 ER13a ExonRegion 0 83.01 71.38 141.38 71.62 64.16 83.82 39.34 72.69 76.72 98.23 102.59 60.31 51.59 147.16 116.24 108.58 100.62 94.35 92.10 55.08 162.62 131.87 134.79 45 E13_Da NovelBoundary 0 13.71 10.00 8.01 8.82 8.49 2.78 18.46 0.00 8.22 27.69 24.22 25.96 13.31 19.84 13.35 41.19 12.34 22.51 9.22 9.59 17.30 8.57 15.79 46 E13a_E14a KnownJunction 0 63.49 80.51 126.75 93.39 102.72 103.75 25.00 75.45 72.92 95.95 78.28 43.96 40.58 137.85 86.04 96.73 89.57 66.91 63.72 41.48 148.20 119.04 93.39 47 I13 Intron 0 16.28 12.45 16.73 9.87 14.18 11.49 12.67 8.35 9.48 11.92 17.96 10.82 18.19 13.40 12.87 18.19 13.90 10.08 14.26 9.56 10.77 11.87 12.84 48 I13_SR1 SilentIntronRegion 0 13.07 11.95 11.62 10.27 20.80 11.11 20.58 8.13 9.49 13.60 17.65 12.83 31.33 13.76 9.95 17.34 19.02 8.69 12.40 9.84 8.54 13.03 12.73 49 I13_AR1 ActiveIntronRegion 0 10.58 7.13 8.45 6.16 15.67 6.05 11.70 2.57 5.81 8.02 15.16 17.11 13.08 10.14 8.15 16.40 16.03 8.83 7.25 7.58 8.63 7.76 8.84 50 I13_SR2 SilentIntronRegion 0 24.24 15.43 17.45 11.88 15.24 11.82 10.33 9.63 8.49 12.07 20.74 11.34 26.43 12.31 17.52 23.57 12.34 8.46 16.19 9.59 11.37 13.79 12.00 51 I13_AR2 ActiveIntronRegion 0 9.74 10.45 19.43 7.62 10.32 12.45 14.77 9.65 11.26 8.48 15.15 7.60 5.25 14.61 9.89 10.16 14.14 14.44 16.92 9.77 10.47 10.70 13.40 52 I13_SR3 SilentIntronRegion 1 12.30 11.44 21.97 9.40 8.39 13.06 8.10 7.65 11.68 15.24 16.71 7.73 3.21 15.79 11.47 16.66 10.76 11.25 13.14 10.04 13.16 9.99 16.23 53 E14_Aa NovelBoundary 0 49.12 9.27 23.89 4.13 12.39 4.88 8.04 4.48 12.38 15.12 19.48 0.00 6.82 11.65 0.00 23.58 21.13 13.51 4.80 9.14 28.05 5.63 11.35 54 ER14a ExonRegion 0 166.09 81.34 150.75 93.25 89.99 105.68 39.79 65.68 98.55 98.91 109.77 44.43 48.38 129.76 151.70 157.29 121.35 79.16 122.47 52.24 164.64 150.73 145.83 55 E14_Ab KnownBoundary 0 316.06 111.10 194.76 117.83 119.78 150.37 64.92 71.35 135.07 110.75 149.35 69.02 72.56 131.38 231.78 210.03 138.01 129.29 181.93 67.05 175.63 203.97 209.57 56 ER14b ExonRegion 0 207.37 92.60 184.79 100.39 86.99 106.05 45.79 79.64 121.04 105.88 104.75 62.72 76.53 155.80 149.17 190.72 81.88 129.48 146.53 73.07 167.59 193.51 177.49 57 E14a_E15a KnownJunction 0 0.00 0.00 0.00 3.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 2.62 0.00 0.00 0.00 58 E14b_E15a KnownJunction 0 278.27 56.63 190.53 107.91 72.16 120.10 40.89 99.03 109.66 106.56 108.29 43.06 32.79 200.19 204.09 162.52 82.94 160.51 158.69 48.19 165.50 199.32 176.87 59 ER14c ExonRegion 0 194.30 66.70 171.80 97.86 69.57 93.52 37.87 84.35 102.51 91.29 105.92 69.27 45.02 183.20 179.30 170.60 74.60 143.75 140.79 61.28 165.28 198.77 172.67 60 ER15a ExonRegion 0 113.67 80.46 175.69 97.23 63.19 112.39 50.02 77.89 80.93 98.22 103.44 51.13 37.72 150.68 173.17 114.72 108.87 117.37 90.41 45.07 156.83 126.33 125.20 61 E15a_E16a KnownJunction 0 85.72 49.93 172.38 105.11 87.01 158.09 55.20 78.86 98.32 97.21 76.28 18.31 39.12 137.50 181.47 91.09 64.61 105.46 97.04 43.02 141.10 95.89 121.73 62 ER16a ExonRegion 0 82.19 55.02 173.78 85.15 60.09 80.66 25.41 75.44 73.73 77.45 77.44 44.32 65.24 132.55 171.74 121.22 89.15 131.64 99.65 60.99 129.22 106.74 124.97 63 E16_Da NovelBoundary 0 16.15 21.90 9.73 4.76 3.65 22.26 8.08 10.23 7.12 11.39 7.00 7.65 6.82 7.30 23.12 8.37 12.25 3.98 3.86 0.00 21.75 14.39 3.24 64 E16a_E17a KnownJunction 0 59.05 48.81 185.03 110.48 30.90 41.68 28.22 68.72 63.60 72.10 104.29 20.11 26.30 98.59 137.46 91.43 108.74 95.55 98.45 57.53 156.23 70.54 121.73 65 I16_AR1 ActiveIntronRegion 1 19.99 12.48 9.49 3.84 16.43 10.39 7.51 7.30 4.35 6.46 20.08 1.68 8.99 6.72 8.86 11.23 14.03 6.09 9.03 7.03 4.16 5.90 18.03 66 I16_SR3 SilentIntronRegion 0 14.98 8.26 14.41 9.19 9.94 8.30 5.61 7.47 5.55 7.73 10.88 3.19 3.86 7.57 11.88 11.90 5.75 9.11 7.76 3.95 7.67 8.58 10.73 67 E17_Aa NovelBoundary 1 41.79 21.84 33.62 31.33 24.62 7.50 4.42 19.26 9.17 18.29 21.95 6.15 0.00 2.47 51.80 8.29 4.02 38.39 4.71 3.07 11.92 17.33 27.32 68 ER17a ExonRegion 0 71.72 60.77 78.04 40.09 41.88 50.88 25.78 41.01 34.80 45.41 58.55 25.95 37.14 72.46 98.84 60.86 47.52 35.95 48.51 35.14 68.86 69.28 59.26 69 ER17b ExonRegion 0 5.29 4.07 0.00 0.00 5.35 1.83 2.65 0.00 0.62 0.00 0.00 0.00 4.69 0.00 0.00 0.00 1.65 0.00 0.00 0.00 0.00 2.08 2.94