Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RRN3P2 Gene 0 32.99 10.49 14.99 13.52 9.42 6.12 9.35 10.81 16.66 16.21 39.07 27.58 33.70 25.75 35.01 41.21 49.49 5.59 3.39 5.88 4.15 12.55 24.54 2 415221 Transcript 0 45.79 17.37 10.14 18.41 11.63 0.00 8.44 12.98 5.30 9.67 48.12 18.46 12.66 22.13 14.34 35.63 54.23 8.54 0.00 5.24 5.87 11.51 20.49 3 427965 Transcript 0 7.29 0.33 0.95 0.55 1.70 0.00 1.77 0.34 1.47 0.78 4.12 9.01 5.64 2.40 5.38 4.00 1.46 0.56 0.00 0.35 0.72 1.45 1.25 4 219758 Transcript 0 25.91 3.24 6.20 4.60 6.42 5.49 6.60 8.25 6.82 5.31 22.12 20.17 37.60 18.75 30.50 30.32 40.53 1.61 1.72 1.11 1.75 5.76 21.22 5 ER1a ExonRegion 0 15.81 3.80 2.47 1.61 1.55 4.34 5.62 1.97 3.42 1.99 8.33 0.83 1.42 8.38 11.26 11.39 17.25 1.58 0.72 1.74 1.21 4.51 7.45 6 E1a_E2a KnownJunction 0 13.41 8.75 2.96 4.69 0.00 0.00 1.77 5.71 8.91 5.00 19.43 5.85 0.00 6.95 6.30 7.69 24.59 1.74 0.00 0.00 0.00 0.00 7.85 7 E2_Aa NovelBoundary 0 50.97 48.35 33.20 52.41 25.30 13.06 24.73 27.03 23.67 64.76 18.32 6.15 7.63 5.12 0.00 15.30 35.06 28.31 25.32 5.69 2.72 19.35 11.52 8 ER2a ExonRegion 0 27.65 21.97 12.10 14.45 13.91 6.18 19.87 6.26 12.50 3.30 60.52 32.63 32.79 49.38 46.31 82.18 73.93 6.69 8.41 15.90 8.46 21.58 25.79 9 E2a_E3a KnownJunction 1 0.00 3.03 1.36 3.56 8.06 0.00 7.64 3.90 10.71 0.00 24.22 13.95 12.34 26.66 48.58 109.71 17.02 0.00 0.00 0.00 0.00 24.62 50.88 10 ER3a ExonRegion 0 4.83 16.70 17.31 18.63 6.43 12.48 11.78 13.34 33.22 62.62 53.65 34.71 26.74 24.28 21.89 54.07 38.39 23.11 4.08 24.52 5.57 17.44 35.19 11 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 I3_AR1 ActiveIntronRegion 0 13.02 13.38 6.76 4.18 4.40 3.02 7.08 4.24 6.06 3.51 5.56 2.72 12.71 3.42 8.28 15.89 19.01 1.52 0.00 4.38 1.81 5.14 4.83 14 ER4a ExonRegion 0 48.12 52.40 51.85 55.73 22.54 5.01 18.39 23.20 60.41 46.60 76.82 29.15 35.18 45.11 38.30 36.85 63.49 9.73 9.87 24.82 10.55 20.40 12.76 15 E4a_E5a KnownJunction 0 257.82 211.15 145.83 187.49 108.91 30.44 64.43 52.29 136.23 105.59 243.48 79.98 156.16 99.54 133.01 130.22 171.86 34.36 28.71 75.74 22.80 63.01 38.93 16 ER5a ExonRegion 1 69.94 57.02 44.27 59.03 30.42 19.83 35.14 23.29 61.18 96.83 101.92 29.81 35.36 42.24 25.96 37.56 87.91 17.81 7.25 27.00 12.14 15.53 22.21 17 E5_Da NovelBoundary 1 17.11 9.27 5.09 18.85 23.09 2.21 6.49 14.25 17.88 10.18 47.54 6.30 14.12 7.42 10.75 27.34 75.18 8.08 4.33 18.34 0.00 6.12 12.21 18 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 E6_Aa NovelBoundary 0 26.89 15.46 0.00 9.42 42.11 0.00 14.57 1.93 5.96 5.96 9.79 6.30 33.60 12.54 4.45 3.85 17.58 0.00 0.00 3.26 0.00 9.37 4.35 20 ER6a ExonRegion 0 20.18 10.00 32.94 56.01 2.32 0.00 1.06 10.31 33.49 47.10 65.72 22.73 12.43 51.94 34.19 22.14 56.50 9.70 1.54 29.18 8.70 27.36 12.19 21 E6a_E7a KnownJunction 1 15.11 0.00 0.00 1.80 7.64 0.00 3.97 4.97 6.08 0.00 15.27 43.21 0.00 9.59 23.86 12.05 43.85 0.00 0.00 0.00 0.00 6.12 25.69 22 ER7a ExonRegion 1 26.93 3.74 3.08 8.02 7.25 1.89 2.18 6.22 7.55 3.74 25.91 43.09 41.68 41.99 31.77 25.93 44.78 4.17 0.21 1.96 1.14 6.05 26.34 23 E7_Da NovelBoundary 1 0.00 0.00 0.00 0.00 3.90 7.50 0.00 2.26 0.00 0.00 0.00 6.30 26.62 17.31 0.00 0.00 4.49 0.00 0.00 0.00 0.00 3.12 0.00 24 E7a_E8a KnownJunction 0 10.67 3.35 0.00 0.00 8.32 0.00 0.00 1.93 0.00 1.56 4.74 5.70 6.33 8.95 4.45 6.84 26.18 0.00 0.00 0.00 3.15 0.00 3.59 25 E7a_E9a KnownJunction 0 26.97 0.00 0.00 1.50 4.33 0.00 0.00 0.00 2.84 0.00 12.32 6.30 26.78 22.31 8.90 19.74 21.60 0.00 0.00 0.00 0.00 0.00 8.71 26 I7 Intron 0 22.33 28.20 20.63 32.01 19.90 5.09 8.86 24.22 32.48 29.35 26.41 23.32 35.80 50.13 22.31 39.80 24.11 6.16 12.71 13.09 1.79 26.91 16.68 27 I7_SR1 SilentIntronRegion 0 22.39 28.27 20.68 32.09 19.96 5.10 8.89 24.28 32.57 29.43 26.48 23.39 35.90 50.26 22.37 39.90 24.18 6.17 12.75 13.13 1.79 26.98 16.73 28 ER8a ExonRegion 1 7.74 11.16 5.22 10.24 7.11 6.34 8.25 4.94 6.26 1.82 3.76 25.17 5.70 9.28 9.70 9.00 8.54 1.35 1.37 3.40 1.48 4.23 2.06 29 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 E9_Aa NovelBoundary 1 153.81 169.05 21.38 44.45 31.75 5.28 12.32 36.35 34.17 3.09 21.85 25.66 121.91 35.96 48.95 25.04 8.60 0.00 9.51 28.51 3.15 14.27 25.44 31 ER9a ExonRegion 1 25.51 16.58 12.46 18.45 2.08 0.00 4.28 12.05 16.14 9.35 19.02 48.67 40.88 26.07 21.10 30.71 24.07 3.06 2.19 3.03 4.87 10.14 11.95 32 E9a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 ER10a ExonRegion 1 41.90 13.56 14.94 26.72 15.31 2.72 5.81 12.90 18.89 13.91 30.99 49.25 39.64 25.86 33.97 47.39 40.46 1.15 3.49 3.43 3.46 17.43 26.49 34 E10_Da KnownBoundary 0 20.15 0.00 6.62 0.00 3.31 0.00 4.02 1.89 3.10 0.00 7.11 6.15 20.13 7.24 0.00 8.46 4.77 0.00 0.00 0.00 0.00 2.69 3.76 35 E10a_E11a KnownJunction 0 38.01 0.00 0.00 1.70 14.77 0.00 1.81 9.08 17.19 6.72 54.91 39.01 80.35 36.55 62.30 49.39 58.81 0.00 0.00 0.00 5.99 26.82 29.88 36 ER10b ExonRegion 1 22.28 1.33 3.80 2.18 6.79 0.00 4.82 1.35 2.98 3.12 10.36 16.43 22.55 7.12 17.07 7.28 5.84 2.25 0.00 1.39 2.88 5.80 5.01 37 E10_Db NovelBoundary 0 6.59 9.87 1.57 9.52 4.24 5.11 6.49 9.32 15.54 4.59 16.79 6.00 0.00 2.94 0.00 23.75 9.44 2.24 4.61 2.88 0.00 3.06 4.27 38 E10b_E11a KnownJunction 0 6.89 0.00 0.00 0.00 0.00 0.00 2.25 0.00 2.92 0.00 5.26 18.16 0.00 2.47 4.45 8.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 ER11a ExonRegion 0 43.80 9.27 6.00 7.28 7.99 1.64 6.84 9.08 13.51 5.99 46.48 46.47 29.29 28.14 23.83 45.67 49.29 2.16 0.00 0.96 1.75 15.70 23.07 40 E11_Da NovelBoundary 0 18.74 0.00 0.00 2.00 0.00 0.00 6.76 2.30 0.00 3.01 2.68 13.80 6.17 0.00 5.93 0.00 4.58 0.00 0.00 0.00 0.00 9.00 0.00 41 E11a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 E11a_E12b KnownJunction 0 45.79 17.37 10.14 18.41 11.63 0.00 8.44 12.98 5.30 9.67 48.12 18.46 12.66 22.13 14.34 35.63 54.23 8.54 0.00 5.24 5.87 11.51 20.49 43 E12_Aa NovelBoundary 0 52.45 0.00 0.00 1.93 3.82 2.44 6.54 0.00 0.00 3.33 5.32 5.70 14.93 0.00 4.45 4.10 4.68 0.00 0.00 0.00 0.00 5.88 8.19 44 ER12a ExonRegion 0 27.96 1.38 2.33 3.01 0.22 1.30 0.11 5.46 10.26 1.26 21.76 19.20 27.01 15.51 32.33 34.13 18.74 0.18 0.00 0.07 0.07 5.98 15.01 45 E12_Ab KnownBoundary 0 257.16 372.50 241.18 313.21 129.71 164.73 187.29 156.37 243.23 278.42 288.23 147.80 154.54 299.49 217.44 282.58 234.69 252.24 112.94 188.30 73.02 148.61 107.39 46 ER12b ExonRegion 0 40.44 6.04 7.54 8.71 6.55 1.29 4.03 5.75 6.90 2.00 34.18 20.41 12.60 12.33 12.82 29.32 44.77 5.07 0.00 0.83 3.44 6.49 17.23 47 E12_Da NovelBoundary 0 178.62 265.02 124.45 144.84 87.35 111.13 133.81 84.20 143.29 96.51 76.49 42.01 112.82 125.26 158.72 156.71 92.47 113.62 50.17 89.04 21.99 70.42 45.16 48 E12b_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 ER12c ExonRegion 0 20.34 0.00 9.53 10.22 5.50 3.36 7.58 10.56 11.80 0.96 33.50 12.51 15.63 4.60 5.48 33.52 27.51 1.85 0.00 0.00 2.20 8.68 16.64 50 ER13a ExonRegion 0 36.70 0.00 9.12 9.52 5.11 10.18 15.05 7.47 12.77 2.04 45.73 26.41 54.69 24.51 30.34 65.93 70.38 3.29 0.00 1.00 6.63 13.53 35.02 51 E13a_E14a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52 ER14a ExonRegion 1 29.12 2.03 8.63 6.93 7.99 5.94 2.97 9.55 13.93 3.49 44.03 20.20 58.67 30.31 34.83 52.86 64.59 0.00 0.00 0.00 1.64 19.54 34.68 53 E14a_E15a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54 ER15a ExonRegion 0 56.40 0.76 5.51 7.31 9.03 9.67 6.68 10.00 11.86 4.18 67.67 28.73 60.33 38.54 47.90 82.17 81.85 0.00 0.00 0.00 1.38 20.41 45.42 55 E15a_E17a KnownJunction 1 72.09 3.22 4.97 9.39 8.15 11.98 19.70 21.32 13.40 3.33 70.44 24.46 115.74 47.32 64.90 64.51 85.27 0.00 0.00 0.00 0.00 10.96 51.39 56 ER16a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.86 1.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57 I16_AR1 ActiveIntronRegion 0 6.12 0.00 2.11 0.64 4.55 0.96 2.30 1.90 0.19 1.80 8.15 3.83 7.14 1.89 7.91 6.28 11.24 0.00 0.00 0.00 1.29 3.81 6.64 58 I16_SR2 SilentIntronRegion 1 22.81 11.95 38.84 20.82 29.27 4.46 20.30 26.09 25.05 34.21 5.39 8.38 16.64 3.94 20.97 14.42 14.10 14.78 20.18 26.31 7.60 4.17 16.75 59 I16_AR2 ActiveIntronRegion 0 5.72 1.94 3.43 3.96 0.24 0.00 2.50 4.09 3.68 6.31 0.00 0.39 0.75 1.51 6.33 3.99 4.88 0.00 1.74 10.11 1.95 0.05 14.48 60 I16_AR4 ActiveIntronRegion 0 3.67 2.34 16.18 8.12 9.91 1.02 5.04 12.77 10.87 17.64 5.29 1.32 3.67 3.40 7.44 6.18 5.55 4.74 8.22 11.13 2.99 1.72 3.56 61 I16_SR4 SilentIntronRegion 0 1.54 0.76 15.93 8.76 3.37 0.05 4.16 10.47 7.73 12.45 2.10 3.18 2.58 1.82 8.70 4.92 5.71 8.21 9.80 11.27 2.12 1.87 8.42 62 I16_AR8 ActiveIntronRegion 1 0.00 0.00 0.00 0.00 1.62 0.00 2.73 3.09 0.00 4.52 0.00 5.51 20.47 1.53 12.66 2.30 2.55 0.00 0.00 0.00 1.70 2.18 2.27 63 E17_Aa NovelBoundary 0 35.49 0.00 0.00 3.30 3.65 0.00 1.85 2.14 7.12 21.49 2.53 0.00 6.82 2.47 4.45 3.16 0.00 0.00 0.00 0.00 0.00 5.27 0.00 64 ER17a ExonRegion 1 59.42 0.40 11.57 7.10 10.12 12.86 8.66 13.87 14.18 13.48 40.46 57.74 99.82 43.71 78.21 88.78 112.91 0.60 3.53 0.83 3.38 13.81 59.12 65 E17a_E18a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66 ER18a ExonRegion 0 31.46 4.57 21.63 5.49 11.22 7.24 9.60 15.68 13.93 16.97 35.47 28.09 35.64 21.99 56.26 43.13 50.77 9.29 7.16 3.54 4.22 11.30 32.38 67 IG19_SR5 SilentIntergenicRegion 0 5.01 0.21 0.70 0.98 1.87 0.40 2.29 1.32 1.73 2.45 2.33 2.98 3.56 1.14 6.07 7.04 12.19 0.23 0.09 0.21 0.86 0.87 6.91 68 IG19_SR7 SilentIntergenicRegion 0 6.44 0.57 1.36 1.10 3.79 0.84 4.80 2.19 2.41 2.67 2.09 5.45 7.72 1.46 5.45 7.99 12.22 0.13 0.00 0.24 0.63 1.07 6.78 69 IG19_SR12 SilentIntergenicRegion 0 0.98 0.00 0.83 0.19 0.96 0.92 0.53 2.85 0.26 5.08 0.35 0.00 0.69 0.24 0.73 3.19 3.61 0.19 0.00 0.00 2.64 10.44 10.59 70 IG19_AR26 ActiveIntergenicRegion 0 1.44 1.22 1.81 0.60 0.27 0.98 1.79 2.47 1.73 3.37 0.58 0.36 0.39 0.13 1.11 3.86 3.87 0.61 0.00 0.00 0.78 8.93 8.68 71 IG19_SR13 SilentIntergenicRegion 0 4.54 0.56 0.75 0.56 1.81 1.63 1.74 3.39 0.38 5.64 1.33 0.00 1.59 0.37 0.59 1.23 9.49 0.00 0.00 0.00 1.46 14.42 15.61 72 IG19_AR28 ActiveIntergenicRegion 0 1.13 0.19 0.67 0.74 1.48 1.59 0.92 1.51 0.44 1.09 0.88 0.65 0.70 0.51 2.26 2.29 2.01 0.00 0.00 0.00 0.84 8.09 15.53