Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GGA2 Gene 0 174.86 70.15 68.24 48.04 95.43 57.40 67.83 54.96 64.17 89.08 197.31 105.29 65.82 172.10 114.43 228.29 152.50 89.11 66.77 61.98 65.69 58.60 74.47 2 309859 Transcript 0 246.11 94.00 115.59 82.00 148.64 108.87 107.84 97.46 118.82 191.68 494.22 226.42 149.75 430.65 232.82 545.78 369.27 179.68 140.01 113.63 140.98 115.93 157.27 3 IG50 Intergenic 0 6.81 10.37 13.23 10.40 11.84 6.47 7.28 5.01 5.35 8.90 2.03 8.64 9.62 7.03 9.54 8.24 5.83 11.16 17.51 10.09 7.29 4.47 11.55 4 IG50_AR3 ActiveIntergenicRegion 0 8.68 17.73 18.47 11.34 8.38 11.19 6.80 6.38 7.92 3.81 6.37 35.78 27.45 15.45 17.07 14.51 8.35 7.39 18.74 19.96 3.53 8.15 23.36 5 IG50_SR2 SilentIntergenicRegion 0 7.78 14.16 19.63 14.10 13.34 12.22 10.99 7.30 7.69 14.33 4.06 13.60 10.83 8.10 12.66 10.10 4.87 23.32 28.28 12.93 9.74 6.99 18.99 6 IG50_AR2 ActiveIntergenicRegion 0 10.10 14.50 18.10 14.01 20.24 7.47 5.52 10.50 5.43 12.57 4.60 15.77 13.10 6.37 9.09 21.87 0.00 27.54 35.40 15.42 4.37 5.70 22.27 7 IG50_SR1 SilentIntergenicRegion 0 6.41 8.89 11.02 9.23 11.39 4.55 6.30 4.13 4.59 7.42 1.16 5.85 8.51 6.45 8.39 7.07 6.29 7.16 13.75 8.75 6.87 3.55 8.56 8 ER1a ExonRegion 1 30.85 7.00 3.34 1.43 9.17 11.29 7.11 3.48 4.84 14.32 67.03 6.07 2.88 44.90 48.44 54.90 65.24 7.36 26.14 19.31 38.77 19.11 22.16 9 E1a_E2a KnownJunction 1 11.34 6.05 11.21 6.99 7.64 0.00 3.44 17.46 18.84 58.32 243.01 19.51 6.82 79.58 47.35 27.60 220.48 18.94 16.66 56.69 119.17 13.90 7.68 10 I1 Intron 0 13.39 8.31 8.94 5.53 8.03 2.61 11.79 5.69 6.33 7.06 4.49 9.14 8.12 3.20 7.92 10.10 10.14 15.92 11.19 19.83 4.60 2.22 7.80 11 I1_AR2 ActiveIntronRegion 0 6.98 4.88 7.28 4.46 4.57 1.37 5.83 2.35 1.42 4.16 2.93 13.76 0.72 2.37 8.21 4.43 8.35 18.11 6.89 13.37 4.34 1.14 6.33 12 I1_SR4 SilentIntronRegion 0 9.48 7.80 8.87 3.94 4.53 2.04 10.00 4.37 5.84 5.73 4.15 4.71 2.38 2.07 6.87 9.33 9.47 12.43 7.81 20.69 5.16 1.44 5.40 13 I1_AR5 ActiveIntronRegion 0 12.84 21.21 14.70 7.96 14.78 0.00 11.46 7.39 7.44 4.27 2.72 13.48 0.00 0.59 8.70 8.17 13.35 15.66 13.75 35.54 5.36 0.09 8.48 14 I1_SR6 SilentIntronRegion 0 17.47 10.21 7.91 7.69 14.19 3.98 19.32 4.79 5.92 7.51 2.74 23.61 20.83 2.39 6.46 9.10 5.84 7.64 8.59 19.57 1.46 3.35 7.51 15 I1_AR8 ActiveIntronRegion 0 14.97 12.43 13.40 9.70 8.79 3.20 13.52 11.97 14.95 16.48 7.43 12.58 10.24 4.46 9.08 20.51 11.01 33.11 35.71 32.47 8.27 3.93 8.50 16 I1_SR7 SilentIntronRegion 0 15.03 11.96 10.30 7.04 11.32 2.78 15.78 6.72 8.07 9.76 5.79 13.77 14.66 4.60 9.72 12.18 15.42 23.12 10.61 27.37 6.60 3.03 9.99 17 I1_AR9 ActiveIntronRegion 0 28.29 11.87 13.13 9.50 9.89 2.45 20.70 7.81 9.06 14.56 8.69 11.48 12.13 5.62 6.98 12.10 10.78 21.80 13.08 32.89 4.83 2.51 11.72 18 I1_AR10 ActiveIntronRegion 0 8.44 7.90 15.65 3.53 1.71 2.89 9.65 5.43 2.32 5.75 6.48 7.41 0.73 3.80 7.30 9.59 9.90 15.81 7.98 17.55 7.07 1.87 11.63 19 I1_SR8 SilentIntronRegion 0 13.85 5.53 9.98 3.95 5.08 2.70 7.89 5.70 6.27 6.07 5.13 6.10 4.23 2.82 7.95 7.34 8.88 18.57 11.75 18.85 4.23 2.57 9.61 20 I1_AR13 ActiveIntronRegion 0 24.16 10.39 11.65 9.94 16.46 7.04 17.53 11.45 11.80 8.57 8.30 13.00 14.53 4.54 14.84 26.66 17.31 25.09 14.39 20.47 9.00 4.55 14.29 21 E2_Aa NovelBoundary 0 31.78 21.71 27.23 18.55 67.32 5.17 55.16 12.86 7.64 15.85 15.27 29.41 7.30 5.47 37.46 27.26 8.79 26.16 12.52 26.27 3.15 5.88 23.65 22 ER2a ExonRegion 1 67.65 21.39 35.84 24.68 41.33 33.66 37.02 51.98 56.57 119.14 375.03 65.71 29.19 311.12 172.16 534.14 257.66 137.97 159.12 87.88 138.96 86.40 169.74 23 E2_Da NovelBoundary 0 48.45 11.31 21.79 17.15 26.66 5.45 20.80 10.93 18.00 14.42 6.21 18.01 6.33 19.07 23.12 67.33 30.11 38.22 44.05 39.31 5.99 0.00 39.52 24 E2a_E3a KnownJunction 1 33.49 14.67 32.64 33.40 71.56 36.97 30.91 49.78 64.24 123.51 284.44 30.61 58.76 272.47 194.45 755.19 163.25 171.04 182.03 61.17 58.94 52.91 185.32 25 I2 Intron 0 19.28 10.23 10.26 7.81 16.77 6.62 15.27 10.36 12.52 13.15 10.18 19.92 11.21 18.80 18.92 24.27 17.58 20.11 11.31 25.05 7.56 7.89 11.12 26 I2_AR1 ActiveIntronRegion 0 18.93 5.20 8.27 6.84 20.83 9.59 16.15 9.87 10.05 13.90 10.78 31.21 16.31 17.10 21.59 13.81 12.65 9.83 10.73 23.98 2.56 7.50 7.85 27 I2_AR2 ActiveIntronRegion 0 26.69 27.42 15.15 5.91 19.99 4.19 16.82 13.10 14.22 12.71 11.45 11.13 7.08 18.45 21.08 26.73 26.90 19.01 9.79 32.84 12.40 9.03 13.36 28 I2_SR1 SilentIntronRegion 0 17.24 9.53 11.58 11.18 8.93 3.07 13.47 10.43 16.93 13.08 9.09 7.30 5.62 22.71 14.66 42.14 21.75 39.89 13.38 23.98 14.10 8.50 15.68 29 E3_Aa NovelBoundary 0 86.76 33.02 34.48 24.21 19.95 23.23 31.97 29.53 36.02 24.12 17.64 25.66 6.66 15.19 34.98 78.18 33.47 70.89 25.98 49.34 11.06 17.15 28.00 30 ER3a ExonRegion 0 42.86 27.19 25.15 23.67 89.36 65.41 43.48 47.46 57.90 100.32 335.79 88.53 78.87 264.90 132.01 356.85 222.51 132.79 85.33 78.19 97.63 52.03 83.00 31 E3_Da NovelBoundary 0 60.97 30.72 26.46 23.81 18.25 36.57 46.55 20.87 36.23 35.78 53.91 22.36 6.49 37.97 51.55 93.22 71.25 68.23 49.98 71.91 28.29 50.46 37.73 32 E3a_E4a KnownJunction 0 53.42 44.07 39.32 28.07 71.22 96.65 59.18 48.39 63.28 93.37 433.64 204.22 128.89 327.80 162.80 234.21 266.76 81.25 78.59 55.48 116.33 44.82 56.34 33 I3 Intron 1 112.94 40.31 30.89 29.46 55.46 46.88 54.80 34.24 42.04 63.92 82.81 32.99 22.11 95.26 39.92 109.19 75.20 54.46 45.61 57.47 30.62 31.22 49.86 34 I3_AR1 ActiveIntronRegion 1 113.21 40.39 30.97 29.53 55.57 46.99 54.93 34.32 42.14 64.08 83.00 33.07 22.16 95.49 40.01 109.45 75.38 54.59 45.72 57.60 30.69 31.30 49.98 35 E4_Aa NovelBoundary 0 156.92 62.69 65.40 42.49 133.28 66.78 93.49 81.00 69.65 78.17 78.49 50.27 21.91 111.31 67.87 170.72 106.87 94.14 66.45 66.22 33.48 36.07 58.13 36 ER4a ExonRegion 0 123.48 57.13 108.02 97.48 174.17 112.47 112.04 126.14 133.42 195.41 591.53 247.57 210.67 561.78 264.57 739.97 387.87 205.19 255.96 126.07 164.99 165.19 254.78 37 E4a_E5a KnownJunction 0 181.07 73.93 150.73 111.07 206.37 78.25 98.97 167.42 178.41 294.49 813.68 239.48 140.09 589.44 220.90 506.36 465.73 192.63 237.75 179.74 168.28 125.83 202.82 38 ER5a ExonRegion 0 246.01 74.75 141.84 107.48 157.55 87.08 107.86 165.23 192.12 292.80 860.25 360.81 277.88 604.63 273.79 826.11 616.23 223.09 230.25 159.14 176.24 213.06 231.43 39 E5a_E6a KnownJunction 0 453.27 118.07 193.16 140.44 242.87 141.91 175.81 204.43 247.25 397.34 752.14 493.96 433.90 755.26 310.77 661.54 625.90 196.07 234.83 141.38 181.87 167.41 212.64 40 ER6a ExonRegion 0 402.44 101.54 142.53 112.32 247.74 171.69 149.99 149.18 173.49 275.67 709.15 611.50 418.50 592.57 263.43 876.89 561.95 207.37 242.73 159.80 172.93 213.72 286.61 41 E6a_E7a KnownJunction 0 835.78 127.08 173.97 143.70 389.30 323.28 215.47 158.92 219.59 334.65 839.37 650.31 350.63 641.65 319.67 1581.81 748.95 320.81 301.00 213.04 214.37 434.94 434.41 42 ER7a ExonRegion 0 264.49 91.76 117.26 91.35 192.89 137.53 124.55 107.12 145.27 224.04 579.30 586.78 365.36 554.29 276.80 750.11 494.81 199.06 160.76 140.85 170.83 174.78 231.27 43 E7a_E8a KnownJunction 0 188.85 100.38 110.52 82.64 181.92 84.38 123.13 102.73 103.70 173.77 460.64 430.64 436.98 520.93 254.90 486.45 379.80 168.18 144.10 122.02 155.49 87.87 129.67 44 ER8a ExonRegion 0 173.09 84.47 119.95 70.48 110.33 104.50 99.33 95.99 112.37 186.82 467.47 446.84 244.63 441.14 217.83 509.33 380.58 221.50 108.93 110.53 143.56 101.88 134.89 45 E8a_E9a KnownJunction 0 277.83 106.03 94.38 55.94 133.19 141.23 120.34 71.92 101.24 160.58 395.57 349.46 210.70 473.19 192.47 486.11 350.91 160.84 164.99 112.11 121.27 109.61 159.12 46 ER9a ExonRegion 0 215.50 98.33 111.61 74.74 125.14 93.90 121.06 90.74 114.41 173.49 446.81 235.69 89.91 432.67 229.77 481.05 334.12 222.32 124.07 110.90 121.88 108.11 141.17 47 E9a_E10a KnownJunction 0 277.83 153.92 146.06 86.54 205.77 104.66 136.51 102.03 131.62 193.62 524.40 167.30 81.49 516.87 333.52 672.90 337.26 256.10 168.57 132.24 140.36 141.76 115.75 48 E10_Aa NovelBoundary 0 20.89 25.32 12.36 11.05 14.77 4.60 21.15 3.82 14.00 10.13 5.16 12.60 0.00 4.77 0.00 3.93 29.36 25.33 0.00 19.88 8.53 5.51 14.85 49 ER10a ExonRegion 0 237.60 137.38 102.80 80.76 144.51 97.95 115.22 88.18 110.01 163.24 515.01 150.74 94.92 438.71 227.79 544.32 355.11 218.65 127.87 101.27 143.40 109.88 147.55 50 E10a_E11a KnownJunction 1 279.01 125.83 135.98 93.59 168.93 131.40 155.67 86.54 124.33 181.69 526.76 169.86 61.68 365.94 245.75 538.41 334.17 201.38 124.80 101.24 132.51 87.69 150.92 51 ER11a ExonRegion 0 230.08 119.44 131.58 88.38 139.94 117.68 112.60 105.32 130.15 178.55 536.51 138.51 88.84 411.13 261.56 568.14 366.94 227.08 119.90 113.58 129.66 113.90 159.99 52 E11a_E12a KnownJunction 0 254.34 81.04 114.10 100.42 176.15 129.07 115.26 112.05 113.51 154.99 568.25 138.35 85.06 482.84 263.55 557.63 398.32 178.33 132.71 108.79 139.80 117.20 180.97 53 E12a_E13a KnownJunction 0 259.01 97.22 139.82 84.74 234.21 120.78 136.11 73.97 117.91 165.87 556.51 141.20 86.20 513.22 238.83 515.08 382.14 176.01 111.34 97.79 157.66 103.79 129.33 54 ER12a ExonRegion 1 224.93 85.97 153.13 106.21 194.78 108.26 116.37 112.89 139.82 195.49 614.33 98.23 54.02 489.92 233.50 586.33 443.23 220.90 121.81 107.56 168.85 118.33 171.14 55 E13_Aa NovelBoundary 0 13.78 9.34 19.16 14.32 3.82 18.11 18.72 8.46 2.78 8.49 2.68 6.30 5.68 10.18 9.64 11.88 24.31 15.50 35.48 11.12 5.25 2.69 11.44 56 ER13a ExonRegion 0 179.90 103.27 168.51 109.22 87.02 96.40 100.16 114.05 134.36 233.01 406.33 101.65 79.38 423.94 256.24 509.45 345.61 138.84 93.64 117.40 135.54 110.44 141.33 57 E13a_E14a KnownJunction 1 320.06 164.58 179.62 143.11 134.13 136.85 137.13 101.70 116.38 232.06 565.20 91.98 112.49 504.21 245.38 578.40 396.35 186.58 94.97 139.47 155.18 106.73 175.25 58 E14_Aa NovelBoundary 0 26.00 35.72 17.62 13.92 28.78 7.61 20.84 10.80 12.44 14.40 0.00 0.00 11.36 2.30 0.00 17.09 26.37 15.84 19.20 9.08 2.97 3.12 10.67 59 ER14a ExonRegion 0 297.69 162.34 142.76 97.35 148.91 122.62 119.88 99.80 116.40 215.63 491.38 132.60 92.76 453.32 242.42 514.72 383.84 203.66 117.64 115.84 152.39 106.19 143.23 60 E14_Da NovelBoundary 0 169.96 41.51 11.32 7.62 46.43 18.74 22.83 9.98 16.15 8.43 7.58 6.30 0.00 4.94 20.15 37.68 34.60 10.74 13.65 12.66 11.80 3.12 21.08 61 E14a_E15a KnownJunction 0 359.17 157.14 160.73 113.41 180.39 137.99 120.65 98.50 114.70 224.83 317.76 173.46 112.33 377.72 258.11 468.85 362.51 235.46 100.05 99.77 146.17 119.53 127.19 62 ER15a ExonRegion 0 258.30 104.72 140.77 82.64 131.05 118.95 114.99 97.86 118.40 206.90 402.87 164.52 110.00 441.83 281.83 511.00 347.14 190.92 116.88 119.41 150.11 92.07 133.77 63 E15_Da NovelBoundary 0 37.19 22.96 27.67 10.16 7.39 8.23 1.77 28.55 20.80 8.41 7.79 0.00 6.82 11.30 0.00 11.45 13.65 9.99 9.60 16.30 8.53 5.45 16.56 64 E15a_E16a KnownJunction 0 347.39 112.55 131.01 70.15 107.73 95.63 117.78 106.22 129.57 225.00 370.30 266.49 164.60 323.33 223.25 337.77 322.02 151.30 60.33 123.17 113.36 99.26 129.50 65 E16_Aa NovelBoundary 0 28.60 0.00 23.24 12.55 8.49 2.33 18.81 6.41 14.03 3.63 17.43 27.01 18.99 19.25 5.19 12.99 9.54 25.33 19.20 11.31 2.29 0.00 21.26 66 ER16a ExonRegion 0 346.14 114.16 169.84 107.47 161.70 133.69 134.58 111.70 158.92 247.89 603.12 217.18 107.36 462.29 360.15 555.95 393.64 226.61 160.88 127.97 179.00 101.94 156.81 67 E16a_E17a KnownJunction 0 488.90 167.01 137.78 101.45 156.96 181.49 141.94 109.87 136.40 242.08 582.09 197.31 93.83 474.19 365.66 589.42 413.56 202.17 178.83 168.87 213.19 90.99 144.95 68 ER17a ExonRegion 0 159.71 61.74 48.63 34.80 81.26 39.12 54.11 37.12 41.69 46.44 73.62 54.97 32.28 63.76 63.33 93.89 61.34 49.15 36.94 40.99 33.66 34.50 39.10 69 IG49_SR2 SilentIntergenicRegion 0 65.12 44.05 23.86 21.05 45.56 17.31 24.89 19.97 22.34 20.31 12.06 36.52 11.12 9.91 14.98 22.06 15.86 7.60 14.50 17.04 2.60 16.16 11.39