Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GDPD3 Gene 0 47.03 25.15 82.01 43.70 33.17 50.60 17.79 48.76 28.37 62.14 12.19 0.99 1.83 8.39 7.40 2.33 3.83 41.55 19.29 25.58 33.61 12.75 22.77 2 406256 Transcript 0 13.75 12.38 28.14 12.65 13.01 25.72 6.75 18.70 11.54 28.11 4.89 0.64 0.38 1.81 3.53 1.68 3.09 16.94 6.75 9.70 13.54 5.17 9.88 3 360688 Transcript 0 23.85 10.46 52.23 22.85 8.49 23.79 7.09 23.52 21.27 47.96 9.55 0.00 3.05 5.13 5.80 0.87 0.33 38.46 16.64 11.55 32.15 11.13 22.20 4 IG6 Intergenic 0 20.02 14.22 35.30 11.69 18.71 36.20 11.98 18.54 13.25 32.69 7.15 1.62 0.00 7.56 4.70 1.22 4.74 24.36 11.14 18.38 26.74 11.14 8.45 5 IG6_AR1 ActiveIntergenicRegion 0 20.18 14.33 35.58 11.78 18.86 36.50 12.08 18.69 13.36 32.95 7.21 1.64 0.00 7.63 4.74 1.23 4.78 24.55 11.23 18.53 26.96 11.22 8.52 6 ER1a ExonRegion 0 23.21 21.04 61.97 24.05 16.25 45.13 13.23 31.71 21.88 58.26 9.83 1.93 1.14 5.43 10.58 0.95 5.26 41.51 17.07 22.59 29.40 10.87 17.60 7 E1_Ab KnownBoundary 0 27.49 25.19 72.97 17.08 0.00 13.63 9.98 23.49 32.87 55.98 1.95 6.30 0.00 2.24 15.08 0.00 0.00 42.03 7.81 21.28 30.09 13.53 11.18 8 ER1b ExonRegion 0 43.38 15.64 78.93 30.10 32.08 50.83 16.96 43.85 31.82 64.61 9.79 0.77 2.00 9.81 6.38 2.31 3.42 68.09 20.18 27.20 30.57 11.38 19.96 9 E1_Da NovelBoundary 0 25.26 5.92 30.28 14.38 0.00 9.88 1.68 14.62 12.53 33.63 0.00 0.00 0.00 2.35 0.00 0.00 0.00 6.55 0.00 7.93 20.08 2.63 0.00 10 E1a_E2a KnownJunction 0 26.45 12.23 52.75 32.43 19.61 30.38 8.26 41.32 30.73 42.01 2.68 6.30 0.00 6.95 4.45 0.00 0.00 46.05 24.47 39.18 14.33 11.08 34.74 11 I1 Intron 0 13.35 2.64 16.59 9.42 3.47 15.64 2.95 9.55 5.12 24.41 2.51 0.00 0.72 1.24 2.72 1.65 1.22 6.13 5.91 1.58 18.79 3.48 10.35 12 I1_SR1 SilentIntronRegion 0 13.44 2.66 16.70 9.49 3.50 15.75 2.96 9.62 5.16 24.58 2.53 0.00 0.72 1.25 2.74 1.67 1.23 6.18 5.95 1.58 18.93 3.50 10.41 13 E2_Aa NovelBoundary 0 38.82 0.00 24.33 26.57 15.37 17.60 8.30 26.90 7.38 45.05 0.00 0.00 0.00 2.12 0.00 3.59 4.77 21.93 9.51 3.26 44.91 11.14 7.94 14 ER2a ExonRegion 0 30.91 11.21 68.31 38.79 20.60 34.88 14.13 51.61 33.52 65.03 9.04 1.71 0.00 7.52 2.77 3.66 5.22 56.08 35.41 31.72 29.67 17.15 32.58 15 E2_Da KnownBoundary 0 31.04 3.35 81.72 37.76 16.81 20.39 10.25 47.44 28.99 84.16 9.90 0.00 0.00 4.53 4.45 3.93 4.77 62.55 53.18 15.98 39.78 14.08 28.00 16 E2a_E2b KnownJunction 0 15.93 14.08 22.44 13.88 20.12 24.70 5.70 22.67 12.73 26.08 4.84 0.00 0.00 0.00 0.00 4.10 4.02 9.33 0.00 6.52 9.02 2.57 12.04 17 ER2b ExonRegion 0 23.85 10.46 52.23 22.85 8.49 23.79 7.09 23.52 21.27 47.96 9.55 0.00 3.05 5.13 5.80 0.87 0.33 38.46 16.64 11.55 32.15 11.13 22.20 18 E2_Ab KnownBoundary 0 40.90 19.47 43.23 17.88 23.68 15.84 7.82 17.05 9.29 39.84 4.74 0.00 6.82 7.89 6.30 0.00 0.00 26.28 3.95 12.40 20.08 5.45 25.44 19 ER2c ExonRegion 0 57.69 29.46 75.23 39.26 29.00 41.51 17.00 45.93 29.81 59.93 10.62 0.00 2.12 10.71 2.54 1.85 1.52 22.27 7.36 20.57 26.28 7.84 14.05 20 E2_Db NovelBoundary 0 3.78 0.00 0.00 1.76 4.33 2.90 0.00 4.19 2.66 2.12 0.00 0.00 0.00 0.00 9.89 0.00 0.00 14.05 4.24 0.00 0.00 0.00 11.52 21 E2b_E3a KnownJunction 0 88.24 67.62 80.28 49.78 40.32 66.44 45.84 46.17 39.50 51.09 17.00 0.00 0.00 2.47 9.39 0.00 0.00 37.35 20.05 41.42 38.24 17.39 23.39 22 ER3a ExonRegion 0 67.18 43.24 86.02 53.15 43.34 76.34 40.67 69.44 39.36 64.20 20.34 0.47 0.00 11.51 5.61 2.13 1.94 30.29 16.48 28.35 33.34 17.71 34.47 23 E3a_E4a KnownJunction 0 58.08 35.59 99.82 56.67 64.09 113.57 54.06 85.52 33.68 83.86 24.37 0.00 0.00 14.89 4.45 8.12 4.77 23.75 25.88 22.88 45.65 14.76 34.06 24 ER4a ExonRegion 0 68.10 37.68 125.19 71.21 63.72 78.16 25.92 75.43 36.61 75.13 12.52 1.49 0.00 9.53 5.36 3.82 4.91 43.55 18.66 28.68 41.11 12.94 29.54 25 E4_Da NovelBoundary 0 6.52 6.45 29.95 15.02 3.99 11.13 0.00 12.12 7.73 12.17 1.95 0.00 0.00 2.47 0.00 0.00 0.00 16.71 0.00 0.00 0.00 2.63 8.54 26 E4a_E5a KnownJunction 0 87.57 26.90 114.75 103.68 74.53 69.39 28.44 83.63 34.78 63.31 4.90 0.00 0.00 4.59 9.89 4.02 0.00 46.80 54.97 39.37 33.61 19.90 16.39 27 ER5a ExonRegion 0 64.06 35.41 150.87 90.15 53.07 57.11 29.35 77.34 33.21 79.74 13.68 4.28 2.66 10.20 4.19 3.40 6.09 32.77 33.06 34.73 42.41 14.68 27.25 28 E5_Da NovelBoundary 0 7.11 0.00 11.80 7.56 10.70 15.22 6.27 11.62 3.47 10.02 2.42 5.85 0.00 2.41 4.45 0.00 0.00 18.65 4.80 6.46 8.46 16.53 18.52 29 E5a_E6a KnownJunction 0 47.86 35.85 128.26 82.91 34.80 41.06 20.62 87.32 39.12 84.24 6.69 0.00 0.00 4.94 4.45 4.36 13.28 36.19 11.86 47.36 30.89 8.70 23.56 30 I5 Intron 0 13.49 4.46 5.09 3.64 2.13 10.59 2.90 7.18 4.40 6.13 3.08 1.32 0.77 5.10 2.11 2.37 1.32 7.51 5.08 5.93 7.90 5.40 6.44 31 I5_AR1 ActiveIntronRegion 0 22.56 5.63 8.66 5.62 2.12 15.22 4.19 13.24 5.09 10.14 4.59 2.62 1.53 6.53 3.37 3.53 2.61 14.90 6.30 9.25 8.71 9.06 11.61 32 E6_Aa NovelBoundary 0 67.57 6.25 22.65 14.72 24.11 45.83 5.56 18.77 19.70 15.20 7.84 12.45 5.84 0.00 11.25 3.50 0.00 35.24 19.95 18.60 22.61 13.72 27.15 33 ER6a ExonRegion 0 94.45 59.16 145.86 95.56 84.51 104.83 43.46 97.70 43.00 101.95 22.30 0.36 4.41 14.16 13.25 4.13 9.36 71.23 29.36 42.51 50.64 27.40 41.75 34 E6a_E7a KnownJunction 0 92.09 35.39 150.79 92.16 76.66 42.48 15.77 82.23 35.56 99.09 17.00 6.30 0.00 25.60 5.32 3.93 21.79 43.69 51.20 46.34 60.73 14.70 37.90 35 ER7a ExonRegion 0 58.87 31.05 126.32 71.17 57.26 46.73 20.41 66.17 30.61 81.35 17.75 2.24 0.00 9.66 4.98 3.52 5.89 35.14 25.22 41.31 57.48 14.24 30.79 36 E7a_E8a KnownJunction 0 83.64 35.32 106.35 53.71 46.35 60.53 18.95 77.63 28.96 71.91 16.90 0.00 0.00 14.95 14.09 4.10 3.83 29.43 8.19 35.79 49.98 16.23 31.41 37 ER8a ExonRegion 0 53.08 24.64 81.68 51.82 26.40 40.20 9.47 58.30 25.79 64.71 17.84 0.00 0.00 12.49 15.34 6.57 0.63 28.75 18.07 37.23 43.35 16.23 26.32 38 E8a_E9a KnownJunction 0 68.01 11.58 57.57 49.31 22.92 35.49 10.16 49.86 26.30 61.51 20.37 0.00 0.00 19.13 0.00 0.00 0.00 29.39 29.65 32.15 42.26 11.27 33.29 39 E9_Aa NovelBoundary 0 7.56 12.50 6.39 2.00 13.33 31.46 3.97 9.32 4.25 9.46 0.00 0.00 0.00 2.47 0.00 0.00 0.00 4.15 4.61 2.75 5.99 3.06 8.19 40 ER9a ExonRegion 0 50.03 17.39 45.34 32.04 25.88 41.75 8.34 37.28 22.12 33.98 10.50 0.00 1.98 6.57 7.25 2.31 2.54 19.73 16.31 21.30 21.41 8.10 13.50 41 ER9b ExonRegion 0 2.12 2.03 0.00 0.00 2.68 7.34 1.32 1.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.19 0.00 2.20 2.08 0.00 42 IG5_AR3 ActiveIntergenicRegion 0 1.43 1.89 0.77 1.55 5.88 19.55 4.37 3.70 3.89 6.65 0.16 0.00 0.00 0.50 0.17 0.25 0.00 5.13 2.96 4.32 1.30 0.00 1.24