Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FBXL19 Gene 0 17.07 29.92 121.94 45.43 28.62 50.35 28.14 67.62 61.04 149.60 115.49 15.87 15.32 109.43 119.19 55.73 61.18 108.32 92.09 81.50 86.57 32.78 42.68 2 471231 Transcript 0 1.24 0.31 0.01 0.32 1.68 1.13 1.44 1.16 0.42 1.33 1.24 0.00 0.00 2.22 2.38 1.87 3.15 1.43 2.28 4.96 3.08 1.62 1.83 3 338343 Transcript 0 3.99 5.40 29.28 11.27 13.57 31.62 13.04 19.94 23.48 54.92 49.13 5.09 11.73 48.82 50.06 26.59 32.03 73.75 58.03 37.46 62.02 7.60 17.25 4 380310 Transcript 0 0.00 0.00 0.24 0.00 0.00 0.24 0.17 0.34 0.24 4.17 0.53 0.00 0.48 0.00 0.27 0.39 0.00 1.08 0.42 0.28 0.30 2.00 0.77 5 427128 Transcript 1 28.00 37.23 84.36 37.76 8.15 46.17 25.26 52.33 46.09 125.39 124.03 12.30 0.00 133.62 95.06 79.47 78.26 97.50 90.17 61.17 72.28 52.05 27.66 6 IG41 Intergenic 0 9.15 14.90 14.03 13.14 8.36 9.81 10.28 4.49 4.39 19.51 3.08 2.94 2.21 12.31 13.41 4.45 4.87 20.89 20.17 20.44 7.83 8.47 8.67 7 IG41_AR1 ActiveIntergenicRegion 0 19.75 33.96 37.51 41.88 22.33 26.57 18.79 12.01 11.18 40.03 5.09 1.52 1.50 24.11 25.48 8.73 8.26 39.94 33.18 28.02 11.47 15.03 19.96 8 IG41_SR2 SilentIntergenicRegion 0 26.96 40.42 14.28 18.39 19.36 15.46 22.90 4.03 4.03 18.95 2.35 13.28 11.02 16.11 19.82 4.33 5.45 12.79 33.44 37.83 4.84 15.58 15.93 9 IG41_AR2 ActiveIntergenicRegion 0 25.02 31.29 35.36 36.49 23.25 20.56 30.20 11.57 7.36 49.65 5.51 6.49 6.39 23.36 34.96 11.06 8.97 50.45 67.06 47.43 15.30 23.02 12.64 10 IG41_SR3 SilentIntergenicRegion 0 27.18 18.20 8.13 6.83 16.51 16.26 28.51 4.03 3.75 23.82 2.48 10.19 8.01 14.40 18.36 11.34 16.06 24.88 33.76 26.60 7.71 15.07 11.35 11 IG41_AR3 ActiveIntergenicRegion 0 10.95 20.30 17.05 17.35 8.03 7.30 11.91 7.59 6.08 22.77 2.93 5.54 2.25 17.32 21.43 6.68 9.02 29.54 24.73 27.07 13.30 11.23 12.01 12 IG41_SR4 SilentIntergenicRegion 0 10.66 33.35 24.92 18.66 3.47 13.48 22.09 5.68 14.68 45.49 12.90 8.86 3.04 23.84 26.81 6.58 14.79 62.41 42.24 41.00 21.55 21.84 10.44 13 IG41_AR4 ActiveIntergenicRegion 0 9.36 14.06 16.52 12.72 7.08 15.78 11.15 5.03 6.22 32.99 8.18 3.71 2.53 26.93 20.69 8.26 9.10 39.45 31.55 40.75 14.51 12.41 14.00 14 ER1a ExonRegion 0 1.32 1.24 0.03 1.26 6.72 4.52 5.76 4.64 0.05 5.31 2.76 0.00 0.00 8.89 9.52 7.47 4.19 5.72 5.94 19.85 12.34 6.48 7.31 15 E1_Da NovelBoundary 0 3.78 9.60 22.12 23.17 20.37 119.87 23.98 20.78 11.20 11.50 10.37 12.30 0.00 15.30 16.69 7.86 0.00 55.75 14.31 11.82 14.21 3.12 15.88 16 E1a_E4b KnownJunction 0 3.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 I1_AR1 ActiveIntronRegion 0 25.87 44.70 13.04 11.61 9.41 44.19 32.53 5.87 6.39 16.17 13.86 0.00 0.00 32.87 36.47 15.65 11.87 41.21 51.82 39.67 19.87 20.84 33.57 18 ER2a ExonRegion 0 0.42 1.52 14.68 3.00 3.55 12.36 2.98 11.88 11.10 30.73 39.41 4.77 3.33 41.37 35.23 13.02 30.02 36.69 37.56 23.79 32.62 6.87 22.04 19 E2a_E4a KnownJunction 0 7.56 9.27 43.88 19.54 23.60 50.88 23.10 28.01 35.85 79.11 58.86 5.40 20.13 56.27 64.90 40.16 34.03 110.80 78.50 51.13 91.43 8.33 12.46 20 ER3a ExonRegion 0 0.00 0.00 0.49 0.00 0.00 0.48 0.35 0.68 0.48 2.58 1.07 0.00 0.97 0.00 0.54 0.78 0.00 0.37 0.84 0.56 0.59 0.88 1.54 21 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.78 0.00 0.00 0.00 3.12 0.00 22 ER4a ExonRegion 0 3.31 9.59 34.12 11.81 13.58 28.96 12.66 11.12 26.63 67.29 60.86 8.33 4.57 39.44 43.00 32.08 34.96 69.60 46.88 37.48 72.38 9.03 18.82 23 E4_Ab KnownBoundary 0 7.56 12.50 42.25 14.15 8.40 24.02 8.04 12.03 27.72 67.15 55.17 12.15 5.84 27.67 22.75 34.35 33.85 66.04 49.04 33.68 60.36 5.51 32.44 24 ER4b ExonRegion 0 2.75 17.92 50.34 16.96 6.11 32.86 14.46 23.10 42.20 108.09 92.61 7.22 10.03 108.62 92.58 51.03 48.90 93.12 61.58 76.39 68.92 13.38 26.12 25 E4_Ac KnownBoundary 0 27.86 28.88 109.99 62.56 23.01 85.63 28.75 49.74 83.62 160.18 220.63 36.16 12.99 149.39 129.92 105.44 130.62 191.60 117.46 115.95 155.86 50.76 56.51 26 ER4c ExonRegion 0 4.07 7.98 105.98 45.67 23.81 39.03 17.58 38.34 74.93 157.21 121.03 21.76 13.47 106.98 133.68 85.43 63.39 193.26 100.62 97.22 93.63 46.48 48.79 27 E4a_E5a KnownJunction 0 3.11 8.95 138.05 54.54 25.98 36.51 16.30 46.66 93.84 185.86 134.09 18.61 6.82 108.07 167.25 92.88 65.36 233.13 107.39 126.68 77.78 53.46 43.71 28 ER5a ExonRegion 0 10.91 22.67 170.19 59.55 28.99 40.71 22.23 87.70 107.87 223.09 189.95 22.52 14.30 155.76 165.88 75.09 89.83 220.52 169.91 145.45 124.68 46.45 68.50 29 E5a_E6a KnownJunction 0 3.48 22.50 236.06 105.55 45.84 59.23 42.75 120.06 131.42 297.79 190.36 32.26 20.29 137.85 171.95 90.92 121.93 292.33 175.44 189.90 137.39 62.15 73.50 30 ER6a ExonRegion 0 10.31 28.24 152.20 58.75 28.73 54.57 27.97 86.46 86.44 226.02 205.98 20.15 14.56 137.02 165.64 96.41 84.87 228.78 152.42 126.46 122.80 52.95 58.40 31 E6a_E7a KnownJunction 0 3.33 30.65 95.50 30.07 19.27 33.56 27.56 78.57 53.44 152.12 109.71 12.30 6.82 146.63 133.51 62.63 87.42 84.19 91.86 101.24 72.46 33.62 36.62 32 ER7a ExonRegion 0 11.24 32.76 102.97 39.75 24.45 51.81 37.19 56.46 46.27 141.69 86.20 9.59 4.13 119.30 125.31 53.17 62.70 86.11 102.43 84.27 67.05 32.94 38.87 33 E7a_E8a KnownJunction 0 16.23 81.24 173.15 65.03 75.72 87.00 64.61 128.15 98.41 241.44 191.57 6.15 6.82 194.89 145.25 119.88 100.23 207.97 175.25 124.89 119.54 50.46 64.79 34 ER8a ExonRegion 1 20.40 49.67 168.14 68.23 36.24 92.19 53.12 113.61 99.74 247.28 197.62 16.40 2.70 203.21 144.18 122.04 102.63 214.17 153.86 115.92 138.70 59.22 61.49 35 E8_Da KnownBoundary 0 7.56 12.30 74.89 29.77 7.39 60.36 18.90 39.60 58.04 98.29 76.28 6.30 0.00 53.09 44.50 34.01 16.92 67.07 38.50 69.03 65.98 22.78 20.23 36 E8a_E9a KnownJunction 1 28.00 37.23 84.36 37.76 8.15 46.17 25.26 52.33 46.09 125.39 124.03 12.30 0.00 133.62 95.06 79.47 78.26 97.50 90.17 61.17 72.28 52.05 27.66 37 ER8b ExonRegion 1 7.04 21.42 83.78 26.22 6.02 27.81 9.96 43.63 45.87 88.64 69.76 6.11 0.00 50.15 59.67 35.11 37.69 55.62 40.15 62.76 61.17 19.07 18.08 38 E8b_E9a KnownJunction 0 6.52 29.14 93.23 32.76 3.74 26.69 10.02 51.14 55.76 121.25 91.34 5.55 0.00 51.62 73.31 27.00 34.13 63.34 37.84 79.70 79.57 28.35 20.91 39 E8c_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.46 0.00 0.00 0.00 0.00 0.00 0.00 40 ER8c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.95 0.00 3.19 0.00 0.00 0.00 0.00 41 ER9a ExonRegion 0 16.21 37.98 155.67 47.76 24.20 46.87 34.70 80.38 76.94 195.21 145.87 12.56 12.02 156.04 136.71 73.56 72.66 143.14 107.87 104.76 112.60 35.81 51.44 42 E9_Da NovelBoundary 0 9.48 3.09 9.46 13.95 0.00 0.00 11.08 15.61 13.98 25.06 2.00 0.00 0.00 0.00 4.45 8.29 8.79 46.64 32.28 39.50 17.54 0.00 8.62 43 E9a_E10a KnownJunction 0 30.23 46.90 243.49 82.74 56.62 63.77 24.42 145.81 85.07 268.78 206.10 24.76 33.44 139.74 124.36 68.96 93.31 209.92 98.07 122.15 182.24 45.62 58.56 44 I9 Intron 0 5.09 8.74 11.17 8.90 7.13 5.31 8.21 10.25 8.96 13.34 1.94 2.99 2.74 1.43 9.90 5.32 4.21 16.72 13.50 20.63 6.85 2.12 7.91 45 I9_SR1 SilentIntronRegion 0 4.28 5.09 5.66 3.87 6.70 2.62 7.89 8.28 5.48 11.81 2.76 3.07 3.79 1.58 11.86 3.89 4.33 11.38 12.88 20.02 4.21 1.49 4.20 46 I9_AR1 ActiveIntronRegion 0 11.43 22.61 14.65 11.12 11.91 11.04 14.08 16.03 11.83 18.72 2.03 9.77 1.02 1.95 14.63 5.85 4.81 18.50 24.79 34.31 6.58 1.32 7.59 47 I9_SR2 SilentIntronRegion 0 4.86 8.01 7.17 8.08 6.13 4.60 7.45 9.38 7.30 10.24 1.32 4.40 3.12 0.29 11.76 6.04 2.42 16.48 13.93 20.10 6.81 1.80 11.16 48 I9_AR2 ActiveIntronRegion 0 7.37 9.06 20.22 14.13 7.84 8.09 7.31 22.45 17.19 29.39 2.85 2.08 7.07 1.31 11.10 10.32 7.14 34.36 18.48 31.61 13.07 2.58 10.30 49 E10_Aa NovelBoundary 0 0.00 8.22 22.71 13.78 3.48 0.00 2.03 14.99 11.26 19.15 2.68 5.85 6.82 0.00 10.51 7.86 8.88 54.76 4.61 20.71 2.66 0.00 4.01 50 ER10a ExonRegion 0 29.40 49.33 265.81 97.08 38.88 66.02 37.93 151.47 115.79 298.45 221.03 35.96 27.40 201.52 208.57 96.38 121.97 212.12 136.68 145.73 153.22 63.32 76.96 51 E10a_E11a KnownJunction 0 48.30 80.31 326.63 116.90 82.00 88.81 58.56 209.60 142.62 354.77 210.84 36.61 25.49 185.06 208.05 99.20 112.67 268.83 192.76 134.29 163.83 74.64 102.61 52 ER11a ExonRegion 0 36.20 54.92 312.07 114.35 57.74 96.63 52.75 177.26 137.94 337.30 215.06 40.35 50.58 197.04 251.12 99.86 113.58 195.25 163.81 150.84 176.32 82.86 81.10 53 E11_Da NovelBoundary 0 12.37 18.15 5.53 6.03 3.90 12.95 4.15 19.06 12.88 23.45 13.11 0.00 0.00 2.47 6.30 11.28 0.00 20.98 8.56 15.08 2.90 0.00 3.16 54 E11a_E12a KnownJunction 1 82.68 26.71 354.01 138.81 56.03 109.65 42.00 211.82 171.38 359.01 220.90 69.32 69.15 235.33 259.84 113.05 108.09 285.07 201.32 158.64 222.34 49.72 90.40 55 E12_Aa NovelBoundary 0 3.78 5.06 23.45 17.38 4.33 16.75 9.14 16.14 20.11 22.59 7.74 13.20 13.64 7.18 0.00 3.67 0.00 42.74 17.13 16.94 7.48 5.51 11.87 56 ER12a ExonRegion 0 30.05 57.42 282.43 117.03 41.90 73.30 39.57 168.84 141.62 353.70 216.89 53.42 69.73 203.42 267.50 113.74 100.56 324.87 168.94 156.90 164.70 75.60 91.00 57 E12a_E13a KnownJunction 0 42.23 87.35 239.23 99.22 84.47 139.75 84.62 148.11 115.59 348.45 175.94 79.83 94.31 217.85 355.40 84.17 85.83 220.78 184.38 169.25 115.89 71.34 159.29 58 ER13a ExonRegion 0 22.79 32.97 108.53 43.12 38.17 61.70 32.78 59.90 52.87 125.40 106.16 14.18 13.41 96.09 110.93 49.74 56.91 74.16 87.48 70.52 78.62 29.14 38.38