Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NDE1 Gene 0 48.19 20.54 26.89 14.51 33.26 21.57 43.52 28.34 17.08 47.60 211.19 83.45 94.08 200.97 143.87 208.72 203.98 93.72 25.33 36.77 65.62 92.21 62.99 2 396353 Transcript 0 15.31 19.04 23.08 11.02 20.25 5.81 16.49 31.82 4.43 47.38 166.32 35.63 47.22 238.63 184.84 171.68 173.70 84.38 19.92 20.29 40.94 50.29 62.00 3 396355 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 396354 Transcript 1 80.85 37.62 12.18 5.40 36.14 21.53 65.23 16.86 6.62 22.22 162.11 12.65 13.20 133.86 94.84 218.19 167.77 70.31 17.78 32.95 44.28 53.83 83.10 5 342673 Transcript 0 7.86 3.49 1.05 0.97 3.44 2.23 7.47 1.98 0.88 3.77 19.19 3.40 4.02 15.20 9.53 22.50 18.15 8.45 2.28 3.50 4.88 5.51 7.97 6 ER1a ExonRegion 0 0.33 0.00 0.42 0.00 0.00 0.00 0.31 0.00 0.28 0.79 0.60 12.07 0.00 0.43 0.86 0.23 0.51 0.29 0.00 0.98 0.68 0.00 0.00 7 E1_Da NovelBoundary 1 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.95 36.46 0.00 0.00 5.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER2a ExonRegion 0 1.79 0.88 0.29 0.00 4.67 2.95 2.03 0.61 0.03 0.51 6.29 11.32 12.42 11.71 12.60 3.00 3.76 2.26 0.00 3.05 2.75 0.77 7.99 10 E2_Da NovelBoundary 1 463.27 386.25 626.06 617.30 372.16 262.92 415.13 716.95 585.64 595.88 135.51 53.42 105.35 45.15 105.94 374.09 336.32 604.85 281.33 451.26 252.48 126.45 415.38 11 E2a_E4b KnownJunction 0 5.41 0.00 4.20 1.96 11.04 4.71 1.90 2.55 2.26 7.01 43.22 18.76 33.28 18.66 34.49 30.42 29.45 13.02 0.00 5.75 5.07 5.08 10.50 12 E2a_E9a NovelJunction 0 6.08 2.89 0.00 0.00 0.00 0.00 0.00 5.22 1.22 0.00 0.00 5.70 0.00 0.00 0.00 0.00 0.00 1.82 15.72 0.00 0.00 0.00 0.00 13 E3_Aa NovelBoundary 0 3.04 2.57 1.21 1.47 7.47 2.44 0.00 0.00 0.00 0.00 8.42 0.00 6.82 4.94 4.45 19.31 12.62 1.78 14.21 3.20 2.35 0.00 3.33 14 ER3a ExonRegion 1 39.09 19.98 5.59 1.98 11.33 8.25 33.29 8.13 2.69 10.95 78.25 2.80 6.76 61.05 48.25 83.83 76.16 36.25 12.98 13.55 19.67 24.02 33.38 15 E3a_E4b KnownJunction 1 122.61 55.25 18.78 8.82 60.95 34.81 97.16 25.59 10.56 33.50 245.96 22.51 19.64 206.66 141.42 352.56 259.37 104.38 22.59 52.35 68.88 83.64 132.82 16 ER4a ExonRegion 0 7.86 3.49 1.05 0.97 3.44 2.23 7.47 1.98 0.88 3.77 19.19 3.40 4.02 15.20 9.53 22.50 18.15 8.45 2.28 3.50 4.88 5.51 7.97 17 ER4b ExonRegion 0 58.25 32.28 33.92 9.25 38.98 17.05 55.55 35.44 14.95 63.75 260.51 105.33 104.49 166.47 119.81 244.69 302.31 123.44 38.50 47.83 63.15 78.14 85.35 18 E4a_E5a KnownJunction 0 10.96 21.05 44.26 4.73 7.64 0.00 11.92 41.32 15.89 78.17 453.80 181.71 112.49 176.41 154.52 222.51 384.57 108.77 60.61 68.20 128.87 89.40 45.67 19 E5_Aa NovelBoundary 0 21.04 0.00 1.57 0.00 3.99 0.00 0.00 1.89 1.79 0.00 0.00 0.00 0.00 0.00 0.00 11.79 4.77 2.07 0.00 0.00 2.97 0.00 4.01 20 ER5a ExonRegion 0 39.49 25.60 70.88 24.11 34.47 16.78 44.72 60.99 27.67 105.21 455.81 190.10 142.47 373.86 260.66 346.75 480.58 143.09 51.07 76.78 101.08 146.24 110.93 21 E5a_E6a KnownJunction 0 57.05 24.73 51.95 23.41 54.07 26.41 88.68 63.58 23.38 103.26 507.92 235.28 137.82 412.03 245.01 265.31 466.76 169.63 54.31 92.36 102.74 151.61 83.14 22 E5a_E7a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.93 1.99 0.00 0.00 9.33 3.12 0.00 23 ER6a ExonRegion 0 57.30 50.99 68.28 32.43 70.61 41.73 99.98 58.61 31.60 109.41 538.27 242.51 249.80 517.43 302.28 384.26 552.34 207.06 58.15 78.47 146.72 189.31 118.08 24 E6a_E7a KnownJunction 0 67.72 66.11 78.59 39.99 59.76 33.96 67.04 65.43 25.72 121.55 374.78 285.54 167.36 495.03 323.14 482.86 558.95 264.02 58.83 75.81 126.09 273.65 91.51 25 ER7a ExonRegion 0 60.31 43.55 63.14 24.24 71.72 42.04 60.61 55.45 32.91 126.05 561.94 265.61 242.14 559.03 329.49 480.68 606.28 276.52 76.03 76.15 163.22 203.91 148.29 26 E7a_E8a KnownJunction 0 60.01 67.88 68.09 22.94 34.72 17.72 39.04 59.02 34.23 137.08 464.80 214.12 185.22 477.90 326.72 417.33 552.31 325.20 39.91 39.76 136.22 175.50 128.90 27 ER8a ExonRegion 0 64.78 36.49 47.78 18.54 52.58 34.70 53.69 43.77 26.89 99.79 411.64 157.16 184.11 410.89 300.23 381.13 467.98 227.91 53.66 54.93 112.95 161.40 125.46 28 E8a_E9a KnownJunction 0 68.23 43.28 41.66 18.18 45.25 36.29 51.54 43.25 24.94 77.74 435.22 105.63 85.71 371.12 262.56 416.22 404.77 261.07 61.55 54.65 94.64 142.00 107.13 29 E8a_E10a NovelJunction 0 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 1.79 0.00 7.32 0.00 0.00 10.48 9.64 7.26 17.95 5.97 0.00 0.00 0.00 0.00 0.00 30 ER9a ExonRegion 0 64.81 28.03 42.91 11.76 47.15 30.06 68.85 31.71 19.29 65.54 362.23 80.47 102.26 383.31 216.71 356.04 357.68 200.36 32.03 49.47 99.21 107.66 125.06 31 E9a_E10a KnownJunction 1 80.98 39.99 32.26 19.64 51.19 31.23 96.01 28.18 22.34 67.80 403.42 74.87 13.64 326.98 201.13 304.79 337.26 194.13 33.04 52.67 111.51 122.59 112.34 32 E9a_E11a NovelJunction 0 3.26 0.00 1.42 0.00 3.14 0.00 0.00 2.01 0.00 1.56 12.53 0.00 0.00 19.25 0.00 14.95 22.35 6.92 0.00 0.00 0.00 0.00 0.00 33 E9a_E12a NovelJunction 0 7.19 0.00 2.90 3.43 4.24 5.11 8.92 5.87 0.00 0.00 18.32 0.00 0.00 14.19 0.00 19.65 9.54 8.12 0.00 2.75 11.18 3.12 12.46 34 I9 Intron 0 11.82 3.03 1.95 1.23 7.10 1.71 9.18 2.76 1.46 2.70 1.89 4.23 3.24 1.73 6.11 5.81 5.99 3.67 1.93 1.78 3.28 1.84 6.15 35 I9_SR1 SilentIntronRegion 0 13.22 3.74 2.11 1.12 6.22 2.42 10.34 2.72 1.27 3.21 1.82 4.15 2.60 1.51 5.73 5.12 4.77 2.91 1.87 1.74 3.19 1.37 5.63 36 I9_AR1 ActiveIntronRegion 0 11.25 2.11 1.67 2.82 12.86 0.02 9.46 2.92 4.03 0.53 0.86 2.92 8.48 5.07 6.36 12.46 7.87 5.01 3.68 2.79 5.47 2.41 8.03 37 E10_Aa NovelBoundary 0 51.19 0.00 9.96 4.03 4.33 0.00 2.25 4.56 3.15 4.00 0.00 0.00 0.00 2.47 8.90 12.82 18.42 5.89 0.00 0.00 0.00 0.00 8.02 38 ER10a ExonRegion 1 44.29 34.85 34.79 19.06 30.51 27.35 55.65 33.75 20.99 69.67 331.34 69.16 54.55 359.35 235.52 252.26 332.96 136.42 39.65 50.36 108.91 102.34 89.88 39 E10a_E11a KnownJunction 0 9.26 14.73 29.15 12.65 19.95 4.37 14.97 38.36 5.87 58.42 171.04 30.31 44.80 275.83 207.31 158.16 143.52 106.54 22.49 21.73 42.56 43.41 72.39 40 E10a_E12a KnownJunction 1 39.27 3.09 14.13 5.36 31.32 2.73 18.95 20.00 13.34 15.66 149.04 41.71 6.82 108.95 104.70 98.26 124.36 67.28 13.18 29.27 61.22 54.80 42.77 41 I10_AR1 ActiveIntronRegion 0 5.16 2.50 2.45 1.82 8.96 2.06 1.85 0.76 0.56 1.86 5.51 7.15 0.92 9.67 17.72 32.78 14.45 8.51 7.38 3.00 4.98 5.27 17.49 42 I10_AR2 ActiveIntronRegion 0 9.99 4.80 7.75 1.92 2.53 4.33 18.12 1.22 1.74 4.84 20.99 5.05 10.94 36.27 29.33 30.88 54.53 16.48 6.02 4.02 14.55 13.76 6.93 43 E11_Aa NovelBoundary 0 32.97 11.91 12.86 16.75 36.93 31.29 31.31 18.44 4.80 22.16 56.80 5.40 26.78 97.18 119.04 90.66 51.71 32.38 24.75 21.16 30.52 34.84 41.40 44 ER11a ExonRegion 0 21.37 23.34 17.00 9.38 20.55 7.24 18.00 25.28 2.98 36.33 161.60 40.95 49.64 201.44 162.38 185.19 203.88 62.23 17.35 18.85 39.32 57.16 51.61 45 E11_Da NovelBoundary 0 106.46 41.31 75.31 16.85 58.57 8.06 29.28 38.08 24.68 111.88 274.81 109.69 148.85 371.07 239.08 455.09 427.96 153.25 89.32 33.43 77.41 118.18 129.41 46 I11 Intron 1 47.56 36.90 29.08 14.47 39.75 17.72 40.75 27.49 8.07 33.87 132.87 56.53 48.12 144.38 133.72 126.46 156.63 46.56 24.16 20.38 29.54 58.36 49.47 47 I11_AR1 ActiveIntronRegion 1 45.17 37.51 47.89 19.09 41.60 31.84 55.79 38.66 9.99 61.21 229.30 79.04 114.46 285.82 199.62 240.78 293.70 89.56 51.27 25.01 65.33 88.16 87.09 48 I11_SR1 SilentIntronRegion 1 13.87 26.24 22.81 5.41 50.42 17.28 45.29 8.97 4.52 15.05 116.00 22.95 20.29 148.05 58.34 130.26 173.74 29.34 30.00 5.67 25.27 37.13 57.74 49 I11_AR2 ActiveIntronRegion 1 74.68 53.57 37.55 21.37 54.05 21.10 49.95 41.28 11.37 46.36 172.36 79.99 52.17 165.57 198.06 143.50 178.36 58.66 24.33 30.22 32.68 83.80 54.79 50 I11_SR2 SilentIntronRegion 0 17.52 11.46 4.87 4.19 5.18 2.32 12.12 5.48 3.03 3.52 4.07 16.98 12.71 9.35 11.88 17.21 15.20 6.00 2.04 8.12 2.81 3.07 10.86 51 I11_SR3 SilentIntronRegion 0 15.93 8.50 0.00 0.00 4.47 1.50 2.21 0.00 0.00 0.00 1.62 14.90 13.61 2.24 10.84 9.94 10.98 0.00 5.33 1.78 0.00 0.00 2.46 52 Ix_SR1 SilentIntronRegion 0 22.64 5.93 7.95 1.97 5.20 0.89 20.57 2.50 0.91 4.15 3.77 3.79 2.28 2.51 2.98 12.99 6.41 0.00 6.19 2.07 2.14 4.05 1.43 53 Ix_AR1 ActiveIntronRegion 0 27.39 8.03 5.71 6.65 13.32 3.44 23.14 2.95 4.43 4.17 4.23 13.67 3.16 5.56 10.58 18.36 13.41 8.03 2.98 3.51 2.73 3.54 8.62 54 Ix_AR2 ActiveIntronRegion 0 30.99 6.88 6.41 5.34 13.01 2.27 13.99 2.26 1.61 3.19 3.12 5.49 18.15 8.21 18.20 28.15 21.07 9.75 2.79 6.13 5.25 7.26 9.57 55 E12_Aa NovelBoundary 0 180.11 6.64 101.21 15.62 18.00 14.71 15.15 11.17 54.11 15.85 43.85 0.00 0.00 18.89 13.35 15.47 0.00 4.93 0.00 0.00 5.19 6.00 4.10 56 ER12a ExonRegion 0 41.98 17.68 20.85 13.86 23.55 20.85 44.37 26.70 19.59 34.04 170.23 32.99 33.36 167.56 104.38 189.07 156.00 83.14 18.47 36.00 65.08 86.90 50.05 57 E12_Da KnownBoundary 0 213.22 77.42 21.64 18.55 64.18 63.26 174.09 20.70 13.63 27.53 220.06 57.47 67.85 161.34 164.78 490.47 258.72 40.17 60.14 55.80 53.68 186.88 106.87 58 ER12b ExonRegion 0 80.93 22.99 30.13 20.67 50.99 30.75 58.23 34.61 21.25 54.47 219.64 112.51 157.59 202.64 177.93 253.22 181.25 91.48 27.69 42.16 72.78 120.46 73.87