Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MVP Gene 0 162.17 8.45 61.68 53.71 59.17 30.26 21.03 94.45 81.51 67.52 210.65 42.12 54.19 283.95 464.04 360.87 268.67 11.26 14.25 6.75 991.25 370.16 449.48 2 357402 Transcript 1 25.77 5.20 9.22 4.29 17.06 15.66 8.64 10.63 8.49 8.77 16.41 7.79 15.24 20.67 33.56 91.02 30.29 7.24 14.49 9.95 54.10 29.31 105.35 3 395353 Transcript 1 85.33 0.02 17.26 5.14 25.29 8.74 7.77 6.46 16.96 7.73 44.91 0.21 21.10 62.72 65.45 209.71 54.10 0.57 3.72 1.06 240.48 134.58 416.64 4 424666 Transcript 0 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.69 0.00 5 452209 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 ER1a ExonRegion 1 47.30 10.41 18.44 7.90 34.12 31.33 17.28 21.26 16.98 17.55 32.83 15.59 30.49 38.90 67.12 180.56 60.57 14.47 28.99 19.89 106.00 57.57 210.70 7 E1_Ab KnownBoundary 1 164.10 32.23 63.30 43.22 100.59 57.18 48.71 105.23 63.14 90.93 106.66 55.52 193.49 102.60 211.51 626.25 175.32 77.35 66.73 59.76 322.42 208.44 780.56 8 ER1b ExonRegion 1 246.52 22.48 42.69 24.10 113.79 87.73 48.64 55.31 49.14 37.43 175.79 45.12 141.69 323.63 773.26 1128.63 326.61 22.66 55.83 39.42 575.28 784.28 1826.90 9 E1_Da NovelBoundary 0 90.31 42.82 93.43 46.48 33.53 68.43 43.59 131.07 56.45 122.57 42.64 5.85 0.00 62.22 48.95 79.89 40.39 127.72 138.26 55.16 59.92 57.80 84.34 10 E1a_E2a KnownJunction 1 122.98 0.00 22.68 1.96 35.99 11.41 10.25 2.26 14.90 4.19 62.81 0.00 17.86 78.11 66.38 274.63 73.77 0.00 0.00 0.00 302.83 149.16 544.79 11 E1a_E2b KnownJunction 1 317.54 0.00 27.05 23.87 119.52 108.23 35.86 63.99 51.56 31.08 246.17 11.55 0.00 513.16 1317.27 1261.63 528.75 0.00 12.99 0.00 940.19 2056.28 2728.89 12 ER1c ExonRegion 1 312.98 11.86 42.89 26.97 131.78 105.75 45.13 60.14 64.53 41.62 267.46 24.53 78.56 592.19 1348.72 1461.05 490.32 14.01 30.13 14.01 995.16 1650.32 2822.60 13 Ix Intron 0 20.00 27.41 75.11 27.94 51.31 25.99 26.31 98.06 42.20 93.81 19.88 16.00 8.28 33.20 27.25 56.17 30.28 67.42 46.48 47.31 63.68 20.85 35.10 14 Ix_AR1 ActiveIntronRegion 0 20.10 27.56 75.52 28.09 51.59 26.14 26.45 98.59 42.42 94.32 19.99 16.08 8.33 33.39 27.40 56.48 30.43 67.78 46.73 47.57 64.02 20.96 35.27 15 I1 Intron 0 18.93 7.88 17.43 11.50 16.83 4.99 6.60 17.44 12.81 13.71 5.32 4.83 9.00 8.09 15.07 19.57 11.27 12.51 13.74 8.34 31.12 7.89 15.02 16 I1_AR1 ActiveIntronRegion 0 28.72 21.83 58.00 27.43 43.16 17.25 19.44 57.79 31.40 49.79 12.95 6.38 9.00 20.21 22.81 29.57 20.05 32.01 39.98 29.76 44.39 17.11 20.67 17 I1_SR3 SilentIntronRegion 0 36.75 6.51 10.68 10.95 21.77 1.68 6.17 10.36 13.96 4.84 6.18 10.89 33.21 8.50 24.30 22.27 17.80 10.16 8.44 3.69 38.66 7.81 23.08 18 ER2a ExonRegion 1 47.67 0.05 11.85 8.31 14.59 6.07 5.30 10.66 19.03 11.28 27.01 0.41 24.34 47.33 64.52 144.78 34.42 1.14 7.43 2.13 178.13 120.00 288.49 19 E2_Ab KnownBoundary 0 27.19 0.00 7.10 16.55 3.90 0.00 0.00 21.11 26.53 22.83 10.21 0.00 33.28 17.36 63.66 65.97 8.70 5.51 17.41 5.88 76.79 57.99 70.68 20 ER2b ExonRegion 0 74.69 6.97 39.07 45.98 22.03 23.14 7.29 56.92 81.30 45.44 221.12 39.81 42.56 182.78 313.44 417.76 342.05 13.03 30.55 10.10 981.27 504.87 713.51 21 E2a_E3a KnownJunction 1 72.46 12.43 48.46 69.72 20.63 15.28 7.95 123.10 140.51 68.28 235.95 42.16 63.63 444.23 887.33 1944.11 417.67 29.10 91.30 20.71 1116.26 2332.45 3884.36 22 E2a_E7c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 ER3a ExonRegion 0 32.74 8.76 40.01 40.89 72.87 38.95 20.61 68.68 72.18 36.66 195.56 60.16 58.91 296.39 586.90 580.54 245.87 19.68 21.31 11.88 905.65 557.65 932.19 24 E3_Da NovelBoundary 0 73.35 15.52 48.19 41.59 80.31 87.17 34.80 64.36 67.33 42.07 201.89 42.76 37.98 296.90 284.81 204.31 216.83 5.39 17.13 10.42 938.15 291.84 272.99 25 E3a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 E3b_E4a KnownJunction 0 151.21 18.62 40.03 40.39 55.60 57.69 23.41 76.48 81.83 50.55 275.96 74.27 52.27 303.26 353.92 263.61 276.48 6.51 25.98 11.70 1113.10 374.57 263.09 27 ER3b ExonRegion 0 81.70 15.21 39.11 38.27 55.98 63.52 22.56 63.61 72.13 44.78 237.98 60.96 41.27 300.53 306.49 222.79 250.87 6.58 15.29 9.87 1072.85 316.03 258.89 28 ER4a ExonRegion 0 137.97 6.81 56.74 43.85 34.94 22.63 9.29 73.19 79.04 42.47 235.53 57.78 48.72 278.22 374.89 300.86 291.78 12.11 8.68 5.39 1071.39 289.11 299.94 29 E4a_E5a KnownJunction 0 212.26 6.58 79.62 43.72 35.48 18.34 8.79 94.14 98.29 40.53 201.21 31.21 32.63 301.55 353.17 301.89 292.85 8.66 12.89 5.94 1054.05 327.91 361.00 30 ER5a ExonRegion 0 121.20 6.16 61.22 32.83 39.65 14.45 17.65 74.32 75.40 38.99 179.98 46.77 48.36 279.88 331.36 268.91 277.28 10.89 8.86 8.25 995.54 258.85 306.79 31 E5a_E7a KnownJunction 0 84.98 3.09 74.33 38.86 48.30 36.17 18.50 66.54 65.80 33.12 183.10 55.97 66.39 269.12 447.62 401.18 324.45 16.87 17.60 2.56 1030.57 253.51 464.03 32 I5 Intron 0 37.84 0.87 4.82 4.50 9.34 3.59 1.69 9.43 8.15 3.06 7.90 4.01 5.68 15.28 22.48 28.59 15.46 1.41 0.81 0.72 27.38 16.50 18.50 33 I5_AR1 ActiveIntronRegion 0 67.13 0.63 7.09 6.63 13.73 5.99 2.26 16.82 13.45 4.78 14.13 6.22 8.67 27.07 36.40 47.60 24.12 2.14 1.49 1.32 44.18 28.83 30.14 34 E6a_E7b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 ER6a ExonRegion 0 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 2.08 0.00 36 E7_Aa NovelBoundary 0 10.30 6.25 0.00 2.06 34.55 5.45 0.00 0.00 8.74 4.78 0.00 0.00 21.26 5.30 0.00 8.54 4.68 0.00 0.00 0.00 11.68 8.14 7.77 37 E7_Ab NovelBoundary 0 96.91 5.66 46.51 35.99 38.03 10.05 23.19 60.63 66.64 23.02 152.04 71.87 67.04 276.06 356.39 361.44 266.67 14.88 8.75 3.00 966.07 338.80 347.26 38 ER7a ExonRegion 0 74.61 2.25 66.30 40.45 35.55 25.87 22.32 60.13 67.67 28.75 169.20 60.77 58.79 263.98 453.11 377.25 315.00 10.43 12.63 3.88 1020.71 300.55 374.84 39 E7_Ac KnownBoundary 0 115.35 3.35 64.63 52.81 43.63 2.38 34.31 93.36 77.75 26.35 135.56 37.21 64.61 306.55 502.26 460.39 306.22 4.81 0.00 11.63 814.60 404.63 402.49 40 ER7b ExonRegion 0 96.34 4.14 68.16 44.60 34.78 10.18 28.99 76.35 83.14 29.62 158.50 52.40 52.24 312.61 424.78 410.77 329.41 5.86 6.15 10.49 1002.76 411.32 367.28 41 ER7c ExonRegion 0 83.94 9.47 65.43 52.97 46.68 17.04 23.59 87.38 87.79 31.45 178.79 56.51 36.78 324.91 479.09 409.45 296.47 9.24 12.74 7.45 993.81 403.93 424.19 42 E7a_E8a KnownJunction 0 102.68 18.02 52.78 58.60 42.78 25.10 23.94 76.40 90.94 34.25 198.05 39.46 33.76 310.44 429.82 377.17 273.21 14.01 14.31 2.56 987.63 445.35 479.14 43 ER8a ExonRegion 0 157.81 8.32 56.34 56.51 62.45 24.93 23.26 76.99 69.35 36.21 215.28 30.69 52.90 295.01 443.19 324.90 288.11 15.27 15.77 9.15 1084.33 332.78 414.75 44 E8a_E9a KnownJunction 0 332.65 15.59 56.06 59.50 81.75 29.81 34.31 107.57 91.09 45.42 266.33 25.36 86.68 353.94 512.27 439.29 347.73 1.99 12.05 8.50 1169.07 435.37 555.97 45 I8_AR1 ActiveIntronRegion 0 41.03 3.43 1.74 3.05 20.18 4.20 2.78 4.52 2.89 7.20 0.95 2.56 8.81 8.10 0.87 18.33 12.13 2.78 0.00 1.36 39.83 4.79 10.40 46 E9_Aa NovelBoundary 0 28.38 3.09 5.80 3.43 18.68 0.00 4.50 5.63 2.49 24.50 2.16 0.00 0.00 7.42 14.09 23.75 3.46 4.60 0.00 2.68 34.60 8.14 24.84 47 ER9a ExonRegion 0 167.78 10.43 71.53 57.33 63.26 27.99 23.37 110.63 109.23 74.38 262.79 50.10 65.68 349.15 522.94 372.82 320.46 5.12 17.81 7.64 1136.40 430.24 459.63 48 E9a_E10a KnownJunction 0 248.41 5.85 80.69 80.21 164.69 40.72 42.75 117.23 112.79 100.92 304.08 62.72 80.68 330.10 634.78 522.68 339.88 3.69 23.53 0.00 1216.15 484.42 557.68 49 ER10a ExonRegion 0 197.34 12.09 86.86 63.97 59.77 37.99 27.91 113.68 115.20 95.89 231.55 61.55 89.82 350.03 581.07 436.48 291.07 16.94 13.20 5.38 1178.66 407.06 437.74 50 E10a_E11a KnownJunction 0 196.48 9.27 104.67 79.01 63.41 29.59 21.51 134.44 142.13 97.00 187.78 100.08 89.28 397.32 729.10 638.81 290.79 22.68 31.06 2.62 1095.75 424.65 656.27 51 ER11a ExonRegion 0 180.11 8.05 100.47 71.97 55.15 46.46 24.65 129.49 106.40 94.79 260.87 46.51 79.68 366.94 558.46 436.11 291.80 17.29 13.11 6.06 1155.10 414.64 426.76 52 E11a_E12a KnownJunction 0 505.79 12.56 165.64 108.44 92.36 86.43 47.25 212.52 139.87 123.14 362.67 87.33 102.75 500.33 586.07 676.83 394.11 21.89 40.19 7.67 1707.16 677.43 764.26 53 ER12a ExonRegion 0 200.83 9.01 66.53 70.05 58.79 34.33 21.37 112.48 80.99 89.74 222.72 45.24 60.74 318.56 463.04 324.88 253.44 7.45 13.33 7.87 1067.03 324.66 366.18 54 E12a_E13a KnownJunction 0 265.68 9.01 53.43 33.90 46.69 12.95 35.29 111.23 65.42 89.05 173.25 48.32 98.69 189.77 359.73 209.60 253.20 0.00 20.89 3.00 776.42 190.07 299.80 55 ER13a ExonRegion 0 218.91 9.44 53.07 47.48 81.90 26.93 27.01 91.49 68.07 80.21 171.09 37.74 51.27 268.10 434.07 252.17 237.35 5.51 7.46 3.42 919.02 262.01 318.71 56 E13a_E14a KnownJunction 0 221.22 3.35 64.49 69.36 61.38 29.19 20.76 124.13 111.98 83.03 183.26 68.12 65.74 189.71 451.08 207.98 269.19 3.90 9.41 2.62 878.47 264.41 300.14 57 ER14a ExonRegion 0 254.92 6.23 63.95 68.38 62.09 26.50 19.08 134.49 101.83 94.24 211.52 27.44 32.68 278.56 476.45 285.89 260.98 7.89 9.10 0.85 999.60 296.06 390.74 58 E14a_E15a KnownJunction 1 427.26 11.91 89.09 93.96 62.73 22.60 22.08 188.57 100.32 114.14 233.90 21.16 6.66 318.74 530.69 444.41 338.38 10.07 8.85 0.00 1197.80 472.66 476.24 59 ER15a ExonRegion 0 189.34 11.35 76.43 77.66 107.48 33.75 28.57 156.96 93.36 114.19 261.92 29.85 34.84 274.67 574.29 340.21 283.21 15.34 10.82 2.33 1096.98 384.50 394.15 60 E15a_E16a KnownJunction 0 275.31 6.05 102.54 92.06 112.73 20.22 27.43 148.48 96.03 123.43 327.03 59.42 66.55 211.31 483.22 393.74 325.29 21.22 9.13 0.00 1158.26 489.56 495.70 61 ER16a ExonRegion 0 206.33 4.00 43.35 35.68 56.45 18.69 14.39 69.30 45.59 60.81 153.97 25.12 23.88 172.55 384.58 241.26 203.78 6.34 6.24 0.39 719.45 291.11 242.38 62 ER16b ExonRegion 0 17.11 1.69 0.00 3.75 2.68 2.75 0.22 8.07 1.85 0.38 9.50 0.00 2.35 10.69 21.76 10.65 6.33 0.00 0.80 0.00 39.48 15.97 3.18 63 ER16c ExonRegion 0 4.23 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 1.49 0.00 0.00 0.00 0.00 2.20 1.04 0.00