Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC004381.2 Gene 0 17.95 90.21 33.70 21.04 41.41 33.85 46.84 35.34 25.18 60.56 28.02 39.63 22.07 46.71 33.90 53.03 35.69 57.59 25.39 60.66 10.91 5.76 3.24 2 348433 Transcript 0 9.71 78.21 30.19 9.19 29.20 13.40 13.47 23.21 28.79 21.70 2.11 11.85 0.00 9.24 8.90 12.39 3.65 11.65 22.49 9.52 8.46 0.00 0.00 3 319757 Transcript 0 0.09 0.24 0.05 0.00 1.84 0.14 2.80 0.17 0.15 0.87 0.00 2.76 2.12 0.04 0.00 1.25 0.00 0.07 0.80 1.06 0.00 0.00 0.00 4 261377 Transcript 0 20.28 91.52 13.06 16.53 39.78 28.52 36.42 22.76 9.51 42.44 14.41 19.39 19.52 31.36 28.06 39.16 23.05 40.87 17.50 42.04 10.36 1.90 1.30 5 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 ER1b ExonRegion 0 2.23 17.43 4.33 3.04 4.51 13.87 10.13 3.17 5.52 16.51 9.50 1.22 0.81 13.22 5.57 21.36 19.22 11.25 9.08 16.42 2.85 2.09 2.08 7 E1_Da NovelBoundary 0 10.96 15.13 4.17 5.53 14.43 18.17 9.63 8.34 2.69 17.19 5.11 0.00 0.00 2.35 19.78 14.87 4.30 23.34 7.72 52.28 11.18 0.00 10.59 8 E1a_E2a KnownJunction 0 0.00 85.97 15.85 1.37 0.00 5.22 13.34 14.91 18.34 29.76 33.17 7.20 0.00 38.79 4.45 33.41 65.08 35.86 33.98 48.39 10.93 2.39 4.18 9 E2_Aa NovelBoundary 0 10.52 0.00 4.94 3.76 0.00 2.38 4.20 18.15 3.59 3.41 4.90 0.00 0.00 2.30 5.44 11.88 4.02 14.84 0.00 3.13 0.00 2.94 11.95 10 ER2a ExonRegion 0 3.79 54.05 13.44 4.88 9.23 19.50 9.87 12.31 14.47 33.08 19.88 9.40 12.03 27.39 15.98 41.76 32.70 64.84 16.59 56.60 12.06 5.46 3.86 11 E2a_E3a KnownJunction 0 6.52 95.25 20.64 3.70 10.87 59.23 20.54 19.96 24.54 34.60 19.74 44.11 19.32 33.32 19.28 20.68 45.35 41.83 23.72 57.27 16.37 8.14 7.00 12 ER3a ExonRegion 0 5.81 117.77 21.22 12.53 22.52 35.28 33.92 19.04 16.83 46.83 25.74 22.26 11.46 37.05 18.77 41.87 23.92 43.40 20.32 76.03 16.07 5.92 4.63 13 E3a_E4a KnownJunction 0 0.00 88.27 38.23 14.02 28.69 53.55 28.40 25.51 9.14 41.45 16.16 29.41 12.50 33.67 17.80 39.31 12.16 22.26 0.00 51.90 10.56 2.39 4.35 14 ER4a ExonRegion 0 13.57 106.53 27.77 10.42 28.72 27.06 38.59 27.60 19.53 56.12 29.94 37.77 32.39 46.54 27.87 39.32 26.95 52.04 16.03 66.61 10.41 6.91 3.01 15 E4a_E5a KnownJunction 0 7.33 137.41 46.72 11.25 33.87 31.52 39.04 19.72 21.90 71.26 33.53 12.60 46.75 73.17 46.23 60.92 24.96 71.71 38.40 78.68 11.68 5.39 0.00 16 ER5a ExonRegion 0 4.69 125.73 33.21 12.81 27.25 24.27 38.85 30.52 21.56 58.61 28.77 45.70 16.87 50.15 27.55 51.81 33.93 59.55 24.24 53.67 12.29 4.98 1.88 17 E5a_E6a KnownJunction 0 18.30 163.39 32.70 13.52 36.33 35.09 41.42 34.30 30.84 71.88 47.91 42.46 26.95 67.16 44.01 70.07 38.71 48.71 32.10 55.22 8.90 0.00 11.10 18 ER6a ExonRegion 0 5.37 83.64 37.25 14.08 30.21 38.22 42.95 23.78 23.97 57.43 33.26 56.13 16.43 58.38 23.46 55.63 42.77 56.53 26.75 60.21 12.97 3.72 1.90 19 E6_Da NovelBoundary 0 0.00 6.31 0.00 4.99 0.00 0.00 13.38 3.94 5.76 11.04 0.00 6.30 0.00 0.00 0.00 0.00 17.20 5.93 0.00 12.34 0.00 3.12 0.00 20 E6a_E7a KnownJunction 1 3.04 33.94 39.03 12.85 36.33 26.80 40.72 20.41 20.66 30.35 24.11 81.48 6.17 35.14 29.30 53.23 29.45 31.92 45.27 55.93 0.00 0.00 0.00 21 E6a_E8a NovelJunction 0 7.19 12.63 9.02 2.56 4.07 0.00 5.87 5.13 1.68 18.00 12.85 6.30 0.00 26.37 14.09 24.27 4.49 21.06 4.24 8.88 2.84 2.33 0.00 22 ER7a ExonRegion 0 13.75 60.94 28.95 13.89 46.57 36.06 52.74 23.38 24.80 40.33 36.40 57.79 27.14 40.02 25.79 43.15 44.21 20.72 24.87 55.22 7.13 1.57 0.00 23 E7_Da KnownBoundary 0 0.00 2.83 1.09 0.00 0.00 0.00 20.80 1.64 2.58 4.51 0.00 0.00 6.82 0.00 0.00 6.32 0.00 0.00 4.52 8.95 0.00 0.00 0.00 24 E7a_E8a KnownJunction 0 20.45 68.08 34.56 11.32 31.58 42.65 51.10 23.70 22.48 39.57 21.53 25.36 13.64 43.09 9.52 35.12 24.03 25.78 16.19 35.35 5.81 2.88 0.00 25 ER7b ExonRegion 0 0.28 0.72 0.16 0.00 5.53 0.41 8.41 0.50 0.44 2.60 0.00 8.27 6.36 0.11 0.00 3.76 0.00 0.21 2.41 3.17 0.00 0.00 0.00 26 E7b_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 E8_Aa NovelBoundary 1 3.04 5.99 6.18 0.00 6.71 4.32 18.90 5.59 7.49 12.68 0.00 31.06 0.00 2.47 15.20 3.76 3.83 6.92 14.40 17.26 0.00 0.00 0.00 28 ER8a ExonRegion 0 18.65 83.57 35.80 18.41 41.98 40.91 53.68 24.73 35.74 67.48 43.72 54.27 21.55 55.47 32.54 68.59 48.35 82.10 33.31 73.57 12.84 3.54 7.75 29 E8a_E9a KnownJunction 0 29.71 84.59 37.11 18.05 77.93 56.90 72.47 26.82 45.17 94.07 60.07 68.72 50.81 79.35 47.72 78.01 57.04 78.51 39.15 83.73 25.27 2.45 0.00 30 ER9a ExonRegion 0 16.28 71.64 35.42 27.03 48.30 46.89 66.96 38.95 41.19 76.86 43.34 70.77 47.98 54.75 29.76 57.71 43.39 58.86 31.01 81.11 11.24 8.15 5.30 31 E9a_E10a KnownJunction 0 22.23 84.13 28.68 40.99 67.23 57.58 76.27 30.76 43.60 63.37 57.75 57.32 22.08 32.14 30.41 80.32 43.29 52.60 28.42 77.28 11.18 8.33 11.69 32 ER10a ExonRegion 0 25.62 125.16 36.92 35.89 62.73 51.89 75.65 36.93 40.26 79.81 39.80 62.21 31.10 55.32 35.52 58.94 53.93 60.39 39.80 99.53 7.21 9.50 1.70 33 E10a_E11a KnownJunction 0 46.23 177.40 59.43 63.00 61.97 23.79 124.58 55.49 39.21 77.71 37.90 74.27 57.95 47.32 39.06 66.31 55.26 70.76 33.98 114.73 5.93 14.45 0.00 34 ER11a ExonRegion 1 26.14 121.52 39.49 41.91 52.35 37.48 81.98 45.02 38.40 78.68 27.00 88.31 52.73 48.50 30.48 59.38 54.00 57.73 37.95 95.12 7.15 11.55 3.51 35 E11a_E12a KnownJunction 1 13.56 148.79 50.09 45.72 26.06 49.80 98.57 53.81 40.77 69.49 24.22 19.06 55.03 100.01 43.27 63.32 42.26 66.37 32.47 92.87 2.78 20.76 4.35 36 ER12a ExonRegion 1 33.42 136.80 48.06 44.37 67.85 45.26 77.02 62.34 36.08 91.34 32.73 88.30 40.86 69.82 40.78 69.22 52.05 75.78 35.59 99.34 9.07 8.43 5.00 37 E12a_E13a KnownJunction 1 38.15 120.50 46.39 38.29 71.31 68.94 61.92 63.58 37.47 82.41 19.74 96.33 39.28 59.98 32.88 52.38 56.38 73.91 24.57 77.34 5.50 8.02 3.24 38 ER13a ExonRegion 0 32.20 168.59 43.35 23.32 78.15 47.03 82.37 52.47 30.99 69.73 29.94 70.67 33.68 58.08 33.78 58.36 53.20 68.06 36.72 68.35 9.14 5.34 4.25 39 E13_Da NovelBoundary 0 0.00 0.00 1.83 4.49 0.00 0.00 15.15 4.11 2.43 6.02 4.00 0.00 0.00 12.89 0.00 7.69 0.00 20.23 0.00 0.00 0.00 0.00 0.00 40 E13a_E14a KnownJunction 0 46.16 217.46 43.29 30.00 70.37 80.24 74.06 62.80 30.76 83.11 35.32 98.73 40.26 65.69 31.52 71.01 49.56 62.97 34.73 86.29 20.02 2.27 4.01 41 E13a_E17a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 I13_AR1 ActiveIntronRegion 0 0.53 3.04 0.46 2.79 0.67 1.37 4.95 2.89 1.61 2.34 0.96 4.45 1.44 3.29 1.92 3.34 5.75 14.19 2.77 6.63 2.20 1.30 1.10 43 E14_Aa NovelBoundary 0 0.00 2.96 7.95 5.76 8.23 2.90 9.27 6.74 2.55 8.65 2.16 0.00 6.33 7.24 0.00 12.39 12.90 17.91 9.51 14.38 0.00 0.00 0.00 44 ER14a ExonRegion 0 23.58 204.89 44.21 28.80 69.82 50.02 74.18 50.92 29.97 67.68 34.76 58.80 29.21 60.42 37.38 60.74 56.87 59.52 33.34 71.93 8.35 5.69 5.99 45 E14_Da NovelBoundary 0 0.00 2.50 1.71 0.00 0.00 0.00 15.99 1.97 4.75 6.96 2.53 6.30 13.15 2.47 4.45 0.00 4.77 18.70 4.33 9.08 0.00 0.00 0.00 46 E14a_E15a KnownJunction 1 20.45 197.27 47.19 27.60 91.51 31.74 65.54 48.80 29.69 61.08 23.85 88.38 25.65 52.56 33.62 51.01 73.59 39.30 63.91 66.35 3.15 3.12 4.35 47 E15_Aa NovelBoundary 0 0.00 12.04 0.00 14.95 0.00 5.56 24.86 2.18 13.98 10.21 0.00 11.85 0.00 2.12 4.45 0.00 0.00 1.91 9.32 5.18 0.00 0.00 0.00 48 ER15a ExonRegion 0 33.36 149.51 53.89 36.22 65.36 53.11 72.40 68.50 38.12 80.47 28.20 57.88 37.08 61.35 39.57 70.19 57.17 58.19 38.85 72.60 7.84 7.79 6.55 49 E15_Da NovelBoundary 0 0.00 6.31 1.27 5.49 26.83 0.00 13.51 0.00 7.84 5.29 2.05 6.30 0.00 2.47 4.45 7.01 3.65 7.38 0.00 3.07 0.00 0.00 0.00 50 E15a_E16a KnownJunction 0 31.04 82.35 24.87 25.37 58.57 65.53 53.13 33.48 11.78 44.97 21.90 31.21 12.99 49.91 44.50 43.49 35.62 49.04 22.49 61.36 10.87 4.90 4.35 51 E15a_E17a KnownJunction 0 9.71 78.21 30.19 9.19 29.20 13.40 13.47 23.21 28.79 21.70 2.11 11.85 0.00 9.24 8.90 12.39 3.65 11.65 22.49 9.52 8.46 0.00 0.00 52 I15_AR1 ActiveIntronRegion 0 5.69 7.94 5.53 5.22 7.95 3.22 11.46 6.98 5.03 13.54 2.49 8.33 9.17 3.34 2.30 8.84 4.54 18.00 2.79 13.69 1.65 2.34 0.52 53 E16_Aa NovelBoundary 0 10.82 5.99 4.97 3.96 0.00 5.79 10.91 2.34 3.04 9.46 2.42 5.70 0.00 4.94 4.45 12.82 4.77 18.28 0.00 6.52 5.37 3.00 4.18 54 ER16a ExonRegion 0 24.28 101.85 13.28 20.40 50.38 27.88 42.77 27.79 13.57 54.87 26.48 34.50 22.90 47.26 38.43 57.59 26.27 56.68 20.79 51.66 13.72 2.71 0.85 55 E16_Da NovelBoundary 0 9.93 12.76 1.83 4.00 0.00 14.20 15.06 3.86 8.28 21.76 2.68 13.20 13.64 4.94 0.00 11.88 0.00 41.62 4.14 22.37 3.15 0.00 0.00 56 E16a_E17a KnownJunction 1 25.78 181.88 14.07 20.34 50.17 20.67 44.47 29.78 12.67 68.79 9.27 11.85 42.21 28.25 29.30 55.54 30.29 57.74 26.73 55.16 16.87 0.00 0.00 57 I16 Intron 0 6.99 16.54 6.19 4.99 10.20 5.59 16.38 5.89 2.81 15.49 1.64 5.52 4.46 6.61 2.49 7.30 6.71 15.65 4.86 15.14 2.05 2.11 1.74 58 I16_SR1 SilentIntronRegion 0 7.50 17.59 6.41 5.24 10.68 6.06 17.69 6.30 2.81 16.22 1.78 5.71 4.68 6.90 2.41 7.68 7.29 16.42 5.28 15.98 1.99 2.30 1.82 59 E17_Aa NovelBoundary 0 9.11 8.81 7.66 7.13 7.72 2.84 3.40 6.98 4.20 25.17 4.58 6.00 6.82 7.00 8.90 8.20 12.90 35.15 9.60 18.54 3.15 5.33 3.24 60 ER17a ExonRegion 0 30.78 140.65 63.80 35.11 69.88 55.36 73.99 49.17 30.93 99.99 24.85 39.66 21.44 70.53 59.87 78.49 29.63 95.13 32.97 75.05 24.57 9.69 5.47 61 E17_Da NovelBoundary 0 3.63 16.05 5.65 10.89 11.54 8.18 15.90 13.10 11.98 23.34 8.05 0.00 13.15 2.47 6.18 8.46 0.00 35.36 8.38 26.65 8.22 0.00 0.00 62 E17a_E18a KnownJunction 0 25.04 84.33 63.13 31.40 69.35 79.27 74.19 90.03 37.53 87.38 37.90 44.26 33.28 76.93 98.65 90.15 31.32 89.41 34.07 77.92 22.55 2.57 0.00 63 I17 Intron 0 4.15 9.47 5.37 8.96 3.94 2.25 9.74 6.32 4.06 12.15 3.32 2.81 2.84 6.79 5.52 18.22 4.86 27.04 5.47 17.74 3.25 1.02 0.00 64 I17_AR1 ActiveIntronRegion 0 4.19 9.57 5.42 9.05 3.97 2.26 9.83 6.38 4.10 12.27 3.35 2.84 2.87 6.85 5.58 18.40 4.90 27.30 5.52 17.90 3.28 1.03 0.00 65 E18_Aa NovelBoundary 0 0.00 17.10 7.84 7.59 8.40 8.63 14.09 12.16 4.92 26.57 9.79 6.15 6.17 9.89 8.90 11.19 13.09 34.53 17.60 26.01 0.00 0.00 3.59 66 ER18a ExonRegion 0 37.30 72.58 54.81 26.29 55.98 34.71 43.89 69.19 33.52 89.45 42.80 28.19 15.19 58.64 60.74 91.41 38.21 109.71 32.68 67.22 18.34 8.40 2.06 67 E18_Da NovelBoundary 0 3.56 9.01 6.83 7.82 20.29 0.00 5.79 6.04 6.86 24.36 4.58 0.00 0.00 14.54 0.00 10.77 0.00 17.99 13.37 14.32 0.00 0.00 3.41 68 E18a_E19a KnownJunction 0 46.23 93.80 44.50 18.91 82.51 56.33 37.14 42.76 30.90 48.03 29.43 31.36 21.91 77.82 108.41 98.86 30.76 70.72 28.42 36.82 11.00 7.90 4.35 69 I18 Intron 0 6.47 11.28 7.84 6.32 7.67 7.32 10.48 7.86 3.20 12.95 4.10 5.94 1.44 6.30 7.87 10.19 5.97 16.21 3.38 11.67 1.51 2.34 1.65 70 I18_AR2 ActiveIntronRegion 0 1.56 12.20 5.29 8.46 10.70 8.30 17.70 6.46 2.86 11.77 3.87 7.75 4.69 4.36 11.76 13.30 5.21 5.15 3.02 15.12 0.00 0.00 2.94 71 I18_AR3 ActiveIntronRegion 0 4.23 18.64 15.32 13.40 8.92 12.84 12.80 12.10 3.09 26.38 8.70 4.33 0.00 11.37 8.22 22.29 13.20 39.42 6.90 42.91 6.61 8.33 1.47 72 I18_SR2 SilentIntronRegion 0 11.39 15.49 11.78 9.07 3.22 6.75 4.51 9.80 1.58 17.18 8.60 2.80 0.00 7.16 11.43 20.17 4.41 36.99 6.06 17.93 2.98 3.47 0.00 73 E19_Aa NovelBoundary 0 14.00 37.82 25.87 8.59 10.19 17.21 19.74 12.16 4.37 29.66 2.63 6.30 0.00 7.18 16.69 39.14 9.26 56.92 13.74 26.14 8.65 5.76 0.00 74 ER19a ExonRegion 0 20.74 34.95 37.84 19.85 42.27 30.99 37.78 41.29 23.62 54.35 35.72 21.68 13.48 51.93 72.80 50.20 18.72 75.51 26.96 57.00 15.50 6.57 0.52 75 E19_Da NovelBoundary 0 10.82 12.30 6.65 8.22 0.00 0.00 6.62 0.00 1.33 16.84 2.37 0.00 0.00 4.94 4.45 4.19 0.00 25.95 4.80 11.38 2.84 0.00 0.00 76 E19a_E20a KnownJunction 0 15.78 12.56 30.25 19.44 31.49 39.52 31.18 39.55 28.30 55.28 17.37 13.80 13.64 51.21 38.69 49.73 22.07 35.36 8.75 54.39 15.38 0.00 0.00 77 I19 Intron 0 5.99 21.84 6.99 6.97 10.12 3.90 12.30 6.96 5.02 15.62 3.39 4.32 4.25 5.44 5.05 6.85 3.55 15.50 4.07 14.70 2.70 1.10 1.54 78 I19_SR1 SilentIntronRegion 0 5.61 22.11 6.72 6.48 9.48 3.77 12.60 7.03 5.13 15.81 3.35 4.29 4.38 5.37 5.28 6.27 3.57 15.58 4.13 14.79 2.92 1.01 1.51 79 I19_AR1 ActiveIntronRegion 0 10.88 18.77 10.61 13.22 18.32 5.62 8.60 6.17 3.78 13.45 3.97 4.71 2.64 6.38 2.10 14.24 3.39 14.81 3.27 13.82 0.00 2.14 1.97 80 E20_Aa NovelBoundary 0 17.34 0.00 16.11 29.43 3.48 5.62 25.17 5.26 5.56 19.02 4.79 0.00 0.00 2.12 15.20 0.00 0.00 11.15 0.00 15.15 0.00 5.39 16.13 81 ER20a ExonRegion 0 8.57 28.96 23.42 17.94 21.35 11.75 18.43 29.38 18.43 44.15 15.48 8.51 11.18 28.49 34.65 31.31 21.34 30.65 11.25 28.51 4.60 2.77 1.11 82 ER20b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 5.30 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 83 IG13 Intergenic 0 12.82 17.16 8.10 6.96 13.63 7.83 10.78 10.30 11.57 13.46 4.36 6.96 5.18 3.96 6.28 7.21 5.78 8.85 7.20 10.40 15.67 15.27 18.23 84 IG13_AR3 ActiveIntergenicRegion 0 28.41 35.61 17.23 14.64 26.98 16.80 21.50 19.49 22.90 27.15 9.89 14.84 10.53 8.65 14.07 15.26 11.70 17.65 14.56 17.92 34.74 32.95 39.01