Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SHISA9 Gene 0 13.32 37.66 5.94 4.44 4.31 4.40 2.44 0.54 4.75 0.69 50.09 2.53 4.15 1.72 2.94 2.42 1.58 28.91 1.68 19.13 1.14 15.89 4.37 2 423335 Transcript 0 0.22 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 5.80 0.00 0.00 0.00 0.00 0.00 0.00 11.09 0.00 4.37 0.55 0.99 0.46 3 415703 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 444763 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 424107 Transcript 0 5.75 31.90 2.05 1.66 0.71 3.64 0.00 0.00 2.31 0.00 5.54 0.00 0.00 0.00 0.00 0.00 0.00 17.36 0.00 12.30 0.37 14.63 0.00 6 482916 Transcript 0 0.00 0.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 1.73 0.00 0.43 0.00 7 ER1a ExonRegion 0 0.22 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 5.80 0.00 0.00 0.00 0.00 0.00 0.00 11.09 0.00 4.37 0.55 0.99 0.46 8 E1_Ab KnownBoundary 0 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.53 0.00 0.00 0.00 0.00 0.00 0.00 14.26 0.00 0.00 3.15 0.00 0.00 9 ER1b ExonRegion 0 0.43 1.76 1.26 0.00 0.00 1.11 0.00 0.00 1.34 0.20 14.56 0.00 0.00 0.00 0.00 0.00 0.00 15.00 0.00 6.57 0.14 6.13 0.00 10 E1_Ac KnownBoundary 0 0.00 3.35 1.83 0.00 0.00 0.00 0.00 0.00 6.74 1.32 4.53 0.00 0.00 0.00 0.00 0.00 0.00 42.86 0.00 6.20 0.00 0.00 0.00 11 E1_Ad KnownBoundary 0 0.00 2.57 1.51 0.00 0.00 0.00 0.00 0.00 3.88 0.00 37.80 0.00 0.00 0.00 0.00 0.00 0.00 22.05 0.00 11.95 0.00 11.08 0.00 12 ER1c ExonRegion 0 0.00 6.10 1.23 0.00 0.00 0.00 0.00 0.00 8.65 1.15 44.84 0.00 0.00 0.00 0.00 0.00 0.00 54.32 0.00 15.74 0.00 14.58 0.00 13 ER1d ExonRegion 0 2.35 12.47 3.16 1.19 0.00 2.18 0.00 0.38 10.26 0.29 51.58 0.00 0.00 0.00 0.00 0.00 0.00 59.45 0.00 21.10 0.00 18.93 1.50 14 E1a_E3a KnownJunction 0 6.59 9.21 2.84 0.00 0.00 0.00 0.00 0.00 3.18 0.00 28.43 0.00 0.00 0.00 0.00 0.00 0.00 33.54 0.00 3.07 0.00 8.70 4.35 15 E1a_E4a KnownJunction 0 3.63 15.85 1.42 1.40 0.00 0.00 0.00 0.00 16.44 0.00 12.27 0.00 0.00 0.00 0.00 0.00 0.00 27.57 0.00 7.86 0.00 29.45 0.00 16 ER2a ExonRegion 0 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 3.47 0.00 0.86 0.00 17 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 E3_Aa NovelBoundary 0 6.82 11.91 1.83 2.83 3.65 0.00 0.00 0.00 1.59 0.00 21.32 0.00 0.00 0.00 0.00 0.00 0.00 15.59 0.00 15.08 0.00 0.00 0.00 19 ER3a ExonRegion 0 7.00 24.54 3.40 2.84 0.63 2.94 0.00 0.00 2.60 0.40 78.24 0.00 0.46 0.00 0.00 0.00 0.00 41.05 0.00 13.52 0.00 10.04 1.93 20 E3_Da KnownBoundary 0 21.34 61.24 2.99 3.73 0.00 13.34 0.00 0.00 5.18 0.00 78.34 0.00 0.00 0.00 0.00 0.00 0.00 55.42 0.00 12.08 0.00 18.98 0.00 21 ER3b ExonRegion 0 23.11 59.69 9.52 7.46 8.07 6.57 4.73 0.91 4.96 1.08 72.67 4.91 7.69 3.34 5.70 4.70 3.07 26.65 3.26 25.70 2.05 18.35 7.49 22 ER4a ExonRegion 0 2.74 14.73 4.47 3.36 0.88 1.46 0.00 1.70 13.85 0.32 17.53 0.00 4.62 0.00 0.00 0.00 0.00 51.16 0.00 25.35 0.00 38.41 2.34 23 E4a_E5a KnownJunction 0 6.89 28.28 2.90 5.33 3.06 0.00 0.00 2.34 12.38 1.67 16.32 0.00 0.00 0.00 0.00 0.00 0.00 35.24 0.00 27.36 0.00 22.66 0.00 24 I4_AR11 ActiveIntronRegion 0 3.39 18.65 0.91 1.70 0.00 0.24 0.00 0.00 0.46 0.00 2.73 0.00 0.00 0.00 0.00 0.00 0.00 2.64 0.00 2.97 0.00 0.00 0.00 25 I4_AR13 ActiveIntronRegion 0 1.09 17.64 0.14 1.70 0.00 0.29 0.00 0.41 0.40 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.68 0.00 0.33 0.00 26 ER5a ExonRegion 0 3.98 22.42 2.99 2.59 0.15 7.19 0.00 0.29 10.06 1.11 10.82 0.00 1.20 0.00 0.00 0.00 0.00 58.09 0.00 14.35 0.00 26.39 0.00 27 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.95 0.00 0.00 0.00 2.27 0.00 28 E5a_E7a NovelJunction 0 6.67 9.21 0.00 0.00 0.00 0.00 0.00 0.00 5.03 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 37.89 0.00 20.58 0.00 35.88 8.71 29 ER6a ExonRegion 0 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.20 0.00 0.00 0.00 0.00 1.69 0.00 0.22 0.00 3.52 0.00 30 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.76 0.00 31 ER7a ExonRegion 0 1.99 14.94 2.30 0.60 0.51 1.55 0.00 0.00 6.33 0.23 7.82 0.00 0.00 0.00 0.00 0.00 0.00 33.22 0.00 12.84 0.30 19.00 2.36 32 E7_Da KnownBoundary 0 0.00 18.62 2.72 1.53 7.13 2.67 0.00 0.00 5.67 0.00 9.37 0.00 0.00 0.00 0.00 0.00 0.00 18.82 0.00 6.52 0.00 13.96 0.00 33 ER7b ExonRegion 0 5.75 31.90 2.05 1.66 0.71 3.64 0.00 0.00 2.31 0.00 5.54 0.00 0.00 0.00 0.00 0.00 0.00 17.36 0.00 12.30 0.37 14.63 0.00 34 IG46_AR1 ActiveIntergenicRegion 0 3.15 40.53 0.83 5.36 1.44 3.20 0.00 0.00 6.57 0.00 12.14 0.00 0.00 0.00 0.00 1.12 0.00 22.98 0.00 11.60 0.00 20.76 2.56 35 IG46_AR2 ActiveIntergenicRegion 0 7.36 53.82 3.91 4.38 0.78 2.74 0.00 1.28 8.58 0.00 9.56 0.00 0.00 0.00 0.00 0.55 0.00 17.53 0.00 9.13 0.00 24.17 2.63 36 IG46_SR2 SilentIntergenicRegion 0 9.64 64.42 5.63 3.99 1.23 3.97 0.00 1.41 8.78 0.26 9.98 0.00 0.00 0.00 0.00 0.00 0.00 22.52 0.00 14.77 0.00 22.38 3.29 37 IG46_AR3 ActiveIntergenicRegion 0 11.59 77.17 5.22 4.30 0.14 3.67 0.00 2.64 10.60 0.00 14.24 0.00 0.00 0.00 0.00 0.00 0.00 11.86 0.00 12.54 0.00 33.77 0.46 38 IG46_SR3 SilentIntergenicRegion 0 12.70 79.99 6.13 5.45 0.00 3.36 0.00 1.73 10.70 0.00 16.75 0.00 0.00 0.00 0.00 0.00 0.00 9.55 0.00 13.83 0.00 34.03 0.00 39 IG46_AR4 ActiveIntergenicRegion 0 12.65 71.81 7.71 8.74 2.17 5.93 0.00 1.03 7.58 0.00 8.65 0.00 1.79 0.00 0.00 0.00 0.00 14.13 0.00 14.48 0.00 23.15 2.38 40 IG46_SR4 SilentIntergenicRegion 0 12.05 76.33 6.59 5.37 2.79 3.68 0.00 0.00 7.53 0.96 7.75 0.00 0.00 0.00 0.00 0.00 0.00 19.38 0.00 9.21 0.18 27.07 2.35 41 IG46_AR5 ActiveIntergenicRegion 0 34.80 112.54 9.11 14.24 0.99 4.24 0.00 0.95 8.33 0.32 7.32 0.00 0.36 0.00 0.00 0.00 0.00 12.57 0.00 10.22 0.00 14.24 1.90 42 IG46_AR11 ActiveIntergenicRegion 0 0.63 18.53 1.27 3.02 0.00 0.00 0.00 0.00 0.73 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.83 0.00