Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 Z84723.1 Gene 0 4.30 0.49 2.51 0.24 1.68 0.27 0.55 0.31 1.26 0.56 3.41 0.73 0.58 3.96 1.92 10.03 4.83 2.80 0.76 0.32 0.39 0.06 0.79 2 442856 Transcript 0 4.16 0.54 2.42 0.45 2.04 0.16 0.42 0.29 0.87 0.23 4.59 1.14 1.25 5.33 1.27 10.92 5.44 3.38 0.52 0.37 0.19 0.00 1.31 3 455739 Transcript 0 4.71 0.36 1.60 0.42 0.12 0.00 0.44 0.03 0.98 0.25 2.30 0.00 0.00 1.41 0.46 8.62 0.86 2.54 0.00 0.00 0.44 0.00 0.80 4 IG4 Intergenic 0 6.39 0.93 1.99 0.86 4.14 0.19 1.35 0.90 1.42 0.42 3.80 1.01 3.54 5.09 4.12 13.05 7.88 4.87 2.24 3.36 1.16 0.59 1.65 5 IG4_SR1 SilentIntergenicRegion 0 6.40 0.93 1.99 0.86 4.14 0.19 1.35 0.91 1.42 0.42 3.81 1.01 3.54 5.10 4.13 13.07 7.89 4.88 2.24 3.37 1.16 0.59 1.65 6 ER1a ExonRegion 0 5.78 0.93 2.51 0.00 3.66 0.05 0.00 0.00 3.34 0.00 7.09 1.62 3.52 6.15 1.87 16.21 9.08 2.51 1.45 0.97 1.00 0.00 1.34 7 E1_Da NovelBoundary 0 0.00 0.00 5.50 0.00 0.00 2.73 3.67 0.00 0.00 2.87 15.58 0.00 0.00 4.24 9.02 15.12 0.00 6.38 0.00 0.00 0.00 0.00 4.18 8 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 I1 Intron 0 9.13 2.23 4.70 1.31 2.76 0.83 0.77 1.33 2.73 0.33 4.73 4.43 1.92 7.29 6.23 15.12 8.29 6.09 1.64 2.19 1.56 0.00 1.32 10 I1_AR1 ActiveIntronRegion 0 5.64 10.17 6.54 0.00 5.35 1.83 1.32 3.46 4.94 0.00 3.87 0.00 0.00 5.68 18.37 26.75 22.56 14.78 0.00 4.26 0.00 0.00 5.87 11 I1_AR2 ActiveIntronRegion 0 4.23 10.17 6.13 0.78 2.68 1.83 1.32 3.95 4.94 0.00 3.87 0.00 0.00 4.64 13.68 25.05 20.75 18.48 0.00 3.65 0.00 0.00 5.87 12 I1_AR3 ActiveIntronRegion 0 6.17 5.59 7.45 1.36 0.22 1.83 1.54 6.91 5.35 0.00 4.19 1.44 2.35 8.93 12.09 29.47 14.85 21.71 0.00 2.13 1.29 0.00 4.89 13 I1_AR4 ActiveIntronRegion 0 6.93 1.48 10.36 1.36 0.00 1.83 1.32 6.91 6.18 0.00 4.57 4.33 4.69 9.60 8.44 25.67 8.40 18.48 0.00 0.19 4.81 0.00 2.14 14 I1_AR5 ActiveIntronRegion 0 9.37 1.45 9.28 1.36 0.00 0.79 1.32 5.19 6.18 0.00 5.80 4.33 4.69 12.53 4.14 21.65 7.54 17.42 0.00 1.52 8.81 0.00 0.00 15 I1_AR6 ActiveIntronRegion 0 9.31 2.03 7.35 1.36 0.00 0.00 1.32 5.01 6.55 0.00 6.96 4.33 4.69 12.18 5.80 23.18 6.60 14.97 2.55 2.13 8.81 0.00 0.00 16 I1_AR7 ActiveIntronRegion 0 15.37 2.81 9.41 2.21 2.03 0.84 0.45 1.90 4.62 0.00 11.95 9.52 0.38 9.32 8.24 15.57 7.13 8.94 2.68 3.49 6.17 0.00 0.00 17 I1_AR8 ActiveIntronRegion 0 15.56 1.08 8.29 2.73 0.94 1.83 0.93 1.73 2.98 0.00 5.00 10.19 1.38 11.75 10.07 12.59 20.78 7.28 0.00 0.00 2.20 0.00 0.00 18 I1_AR9 ActiveIntronRegion 0 8.69 1.02 6.25 1.31 4.03 0.49 1.58 2.38 2.71 0.00 5.21 2.96 3.60 8.10 5.97 20.00 9.41 6.03 3.20 1.07 0.29 0.00 0.74 19 I1_SR2 SilentIntronRegion 0 10.70 1.79 2.41 1.34 2.94 1.61 0.29 0.00 1.62 0.00 2.55 3.47 0.85 4.68 4.16 11.09 5.08 2.43 1.40 2.81 0.48 0.00 0.00 20 E2_Aa NovelBoundary 0 34.15 9.41 28.41 1.63 0.00 8.01 1.85 5.34 2.98 0.00 2.68 12.90 0.00 11.65 17.18 18.63 18.05 10.45 0.00 0.00 0.00 0.00 4.10 21 ER2a ExonRegion 0 2.67 1.91 9.12 0.00 0.25 1.35 0.86 1.78 0.86 0.00 7.14 0.00 3.03 7.85 1.87 16.10 11.02 8.78 0.00 2.32 0.00 0.00 7.54 22 E2_Ab KnownBoundary 0 6.74 9.80 16.62 0.00 0.00 2.90 4.24 12.03 1.77 3.25 24.85 0.00 0.00 2.12 8.90 38.37 13.00 16.58 0.00 5.62 0.00 0.00 17.24 23 ER2b ExonRegion 0 7.29 2.60 8.36 0.00 3.57 0.00 2.04 2.04 1.85 1.13 3.06 0.00 2.74 4.26 5.56 21.34 15.68 8.44 0.00 0.92 0.00 0.00 3.59 24 E2_Da NovelBoundary 0 10.59 2.70 6.36 1.90 4.33 0.00 0.00 1.77 1.62 1.67 2.68 11.85 0.00 16.25 0.00 18.54 8.98 1.78 3.48 0.00 3.03 0.00 0.00 25 E2a_E3a KnownJunction 0 3.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 I2 Intron 0 12.05 2.17 6.71 1.93 2.86 2.39 1.88 2.75 1.31 2.23 6.19 4.83 3.66 13.28 5.26 33.48 19.97 10.56 1.89 2.52 1.57 0.00 3.83 27 I2_SR1 SilentIntronRegion 0 12.11 2.18 6.75 1.94 2.87 2.40 1.89 2.76 1.32 2.24 6.22 4.86 3.68 13.34 5.29 33.63 20.06 10.61 1.90 2.54 1.58 0.00 3.85 28 E3_Aa NovelBoundary 0 7.04 0.00 1.12 1.76 0.00 0.00 2.25 0.00 2.95 4.30 4.90 0.00 0.00 15.95 0.00 20.25 4.77 2.20 8.94 0.00 0.00 0.00 0.00 29 ER3a ExonRegion 0 8.94 0.00 2.63 0.00 0.00 0.00 2.41 0.00 0.02 1.61 0.00 3.25 0.00 7.13 1.92 9.53 4.51 3.28 0.00 0.00 1.00 0.00 1.34 30 E3a_E4a KnownJunction 0 3.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 I3 Intron 0 2.79 0.00 4.01 0.00 1.18 0.00 0.00 0.00 0.81 0.75 2.55 0.00 1.70 3.32 0.00 15.68 5.81 1.21 1.40 4.68 0.00 0.00 1.29 32 I3_SR1 SilentIntronRegion 0 2.84 0.00 4.08 0.00 1.20 0.00 0.00 0.00 0.82 0.76 2.59 0.00 1.73 3.38 0.00 15.96 5.91 1.23 1.43 4.76 0.00 0.00 1.31 33 E4_Aa NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 1.50 6.95 0.00 0.00 11.48 0.00 19.05 12.62 9.45 0.00 3.26 0.00 0.00 4.35 34 ER4a ExonRegion 0 6.07 0.93 4.19 1.36 1.65 0.00 0.35 0.00 1.44 0.00 6.26 3.02 0.00 10.50 4.04 19.29 6.25 3.46 0.00 1.94 0.00 0.00 0.89 35 E4_Da KnownBoundary 0 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.10 36 E4a_E4b KnownJunction 0 6.67 0.00 3.49 2.06 0.00 0.00 2.21 0.00 3.33 0.00 5.16 0.00 0.00 2.88 0.00 29.74 0.00 4.93 0.00 0.00 0.00 0.00 4.01 37 E4_Ab KnownBoundary 0 9.41 0.00 2.42 0.00 6.96 0.00 0.00 0.00 1.56 0.00 7.21 0.00 0.00 2.94 0.00 19.99 4.11 2.40 0.00 0.00 0.00 0.00 0.00 38 ER4b ExonRegion 0 10.58 0.00 6.13 2.73 5.35 0.00 1.32 0.00 2.47 0.00 9.66 0.00 0.00 10.56 2.90 26.75 6.60 5.54 0.00 0.00 0.00 0.00 2.94 39 ER4c ExonRegion 0 10.58 0.74 2.70 0.78 3.40 0.00 1.47 0.00 1.78 0.00 7.82 0.07 0.00 6.86 1.20 26.61 7.28 4.11 0.00 0.00 0.00 0.00 0.70 40 E4_Db NovelBoundary 0 0.00 0.00 1.83 0.00 0.00 2.67 3.80 2.26 0.00 0.00 2.16 0.00 0.00 8.48 4.33 24.69 4.49 7.34 0.00 0.00 0.00 0.00 0.00 41 E4b_E5a KnownJunction 0 3.70 3.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 12.01 0.00 3.50 9.54 2.28 0.00 0.00 0.00 0.00 0.00 42 I4_AR1 ActiveIntronRegion 0 29.93 0.00 0.53 0.00 4.87 0.00 1.09 0.00 1.85 1.35 1.73 0.00 0.00 4.41 0.00 11.57 6.60 5.87 2.62 0.00 2.20 0.00 0.00 43 I4_AR2 ActiveIntronRegion 0 38.37 0.00 6.87 1.36 14.39 0.00 1.48 0.00 4.39 1.80 2.69 0.00 3.13 6.33 1.51 13.18 6.17 8.52 3.60 0.00 2.33 0.00 0.04 44 I4_AR3 ActiveIntronRegion 0 0.19 0.00 6.91 0.62 5.35 0.00 0.00 0.00 0.22 0.63 5.27 0.00 22.17 3.25 0.00 1.62 0.00 5.38 0.00 0.00 0.00 0.00 2.94 45 E5_Aa NovelBoundary 0 14.15 2.70 5.06 0.00 8.66 0.00 0.00 0.00 2.89 0.00 4.63 0.00 15.58 4.94 11.13 8.46 8.23 7.09 4.61 0.00 2.59 0.00 0.00 46 E5a_E5b KnownJunction 0 16.89 0.00 2.72 0.00 0.00 0.00 0.00 0.00 0.00 1.24 5.05 0.00 0.00 0.00 0.00 7.69 4.30 0.00 0.00 0.00 0.00 0.00 0.00 47 E5_Ab NovelBoundary 0 13.85 0.00 2.34 0.00 3.23 0.00 0.00 0.00 3.59 0.00 11.06 12.60 0.00 2.47 4.45 22.22 4.39 3.81 8.56 0.00 3.09 0.00 0.00 48 ER5a ExonRegion 0 8.31 2.03 1.40 0.00 1.15 0.00 0.00 0.00 0.00 0.00 7.87 8.04 0.00 9.51 0.00 11.89 9.90 3.96 1.82 0.00 0.00 0.00 0.00 49 ER5b ExonRegion 0 8.47 2.03 3.68 0.00 2.68 0.00 0.00 0.00 0.00 0.00 9.66 8.66 0.00 9.74 0.00 11.89 9.90 5.54 3.19 0.00 0.00 0.00 0.00 50 ER5c ExonRegion 0 8.33 0.27 3.76 0.00 3.96 1.02 0.46 0.00 0.00 1.63 12.42 2.49 1.58 7.36 6.78 27.49 7.82 7.63 1.42 0.00 0.00 0.00 0.00 51 E5_Db KnownBoundary 0 0.00 0.00 0.00 0.00 3.74 0.00 2.21 0.00 0.00 1.26 6.90 0.00 6.82 9.01 0.00 16.32 0.00 4.15 0.00 0.00 0.00 0.00 0.00 52 E5b_E5c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.93 0.00 0.00 0.00 0.00 0.00 53 E5_Ac KnownBoundary 0 3.11 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 2.41 0.00 3.76 4.77 4.68 0.00 0.00 0.00 0.00 0.00 54 ER5d ExonRegion 0 8.82 0.00 0.00 0.00 5.35 0.00 1.32 0.00 0.00 2.10 7.73 0.00 4.69 11.10 2.90 23.28 12.10 3.70 0.00 0.00 0.00 0.00 0.00 55 ER5e ExonRegion 0 4.23 0.00 0.31 0.00 5.44 0.00 0.54 0.00 0.00 0.50 4.05 0.00 0.73 4.77 1.45 11.33 7.32 1.56 0.00 0.00 0.00 0.00 0.00 56 E5c_E6a KnownJunction 0 3.48 0.00 0.00 0.00 3.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57 E5c_E8a NovelJunction 0 3.78 0.00 3.67 0.00 3.90 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 9.54 0.00 8.72 0.00 4.81 0.00 0.00 0.00 0.00 0.00 58 E6_Aa NovelBoundary 0 0.00 6.31 5.32 0.00 0.00 0.00 0.00 2.55 0.00 0.00 2.47 6.15 6.33 9.24 13.35 14.36 14.12 2.49 0.00 0.00 6.30 0.00 0.00 59 ER6a ExonRegion 0 3.42 0.60 3.66 0.93 3.63 0.54 1.16 0.62 0.54 1.48 1.70 0.00 0.00 4.29 4.15 8.25 3.87 3.68 5.60 0.00 1.84 0.00 0.86 60 E6_Da NovelBoundary 0 10.96 10.00 28.47 13.88 3.99 19.48 3.80 22.43 9.95 24.10 5.00 0.00 0.00 13.13 4.45 27.94 4.77 28.40 4.80 12.59 20.45 2.82 8.71 61 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 62 E6_Db NovelBoundary 0 0.00 0.00 3.16 1.76 0.00 0.00 0.00 1.73 0.00 1.67 0.00 0.00 0.00 2.47 4.45 0.00 12.34 1.99 0.00 0.00 0.00 0.00 0.00 63 E6b_E7b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 64 ER6b ExonRegion 0 0.00 0.00 0.18 1.36 0.19 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.00 2.61 1.87 2.97 0.00 3.89 0.00 0.00 0.71 0.00 0.00 65 E7_Aa NovelBoundary 0 3.04 0.00 11.68 0.00 0.00 0.00 0.00 2.26 1.42 1.67 10.11 0.00 0.00 0.00 0.00 16.24 4.77 9.16 0.00 0.00 0.00 0.00 0.00 66 ER7a ExonRegion 0 0.00 1.80 1.79 0.04 0.61 0.00 0.00 0.15 0.00 0.00 1.27 0.00 0.00 4.18 2.32 5.69 0.00 2.85 0.00 0.00 2.20 0.00 0.00 67 E7_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 7.24 4.45 11.96 3.83 4.48 0.00 0.00 2.90 0.00 0.00 68 ER7b ExonRegion 0 0.12 0.39 1.18 0.05 1.10 0.00 0.00 1.20 0.00 0.02 0.52 0.00 0.00 0.56 0.22 0.99 0.00 1.72 0.00 0.00 0.31 0.00 0.00 69 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70 ER8a ExonRegion 0 1.57 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.67 1.00 0.09 0.00 0.00 3.13 0.00 6.64 1.01 0.00 0.00 0.00 0.00 0.00 0.00 71 E8_Da NovelBoundary 0 14.00 0.00 0.00 0.00 3.82 0.00 0.00 0.00 1.62 0.00 0.00 0.00 0.00 2.47 0.00 12.73 0.00 2.24 0.00 0.00 3.15 0.00 0.00 72 E8a_E9a KnownJunction 0 3.26 0.00 1.83 0.00 0.00 0.00 0.00 0.00 3.12 1.56 0.00 0.00 0.00 0.00 0.00 4.36 8.32 0.00 0.00 0.00 0.00 0.00 0.00 73 E9_Aa NovelBoundary 0 20.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.72 1.07 2.05 0.00 0.00 5.24 0.00 7.09 9.54 1.87 0.00 0.00 0.00 0.00 0.00 74 ER9a ExonRegion 0 4.75 0.00 1.74 0.00 0.46 0.61 0.00 0.00 2.67 0.56 4.12 0.00 0.00 1.57 0.73 6.02 5.45 0.91 0.00 0.00 0.00 0.34 0.00 75 E9_Da KnownBoundary 0 14.22 0.00 1.74 0.00 0.00 2.38 0.00 0.00 3.12 0.00 2.68 0.00 0.00 7.18 5.19 8.20 4.77 7.67 0.00 0.00 0.00 0.00 0.00 76 ER9b ExonRegion 0 1.14 0.00 0.20 0.00 0.93 0.00 0.23 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.29 0.49 0.00 0.00 0.00 0.00 0.00