Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DNASE1 Gene 0 26.58 20.05 49.60 34.69 31.74 30.21 18.30 27.42 30.11 62.62 20.40 11.76 11.67 43.18 37.37 41.07 33.14 78.64 54.69 42.18 32.97 11.54 19.89 2 407479 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 414110 Transcript 0 5.01 9.08 7.17 8.47 5.68 9.90 4.61 5.41 11.61 20.30 2.88 0.53 4.92 8.75 13.17 11.89 8.23 27.49 18.51 14.93 13.41 4.04 1.75 4 246949 Transcript 0 17.65 14.03 34.54 23.65 19.98 15.82 9.71 16.06 15.09 36.65 7.92 4.85 6.51 16.31 14.88 18.21 15.74 46.96 30.02 22.34 15.12 4.60 9.14 5 IG5 Intergenic 0 3.48 2.49 6.21 4.42 5.52 5.32 4.17 3.69 5.13 11.43 2.84 1.18 2.23 7.00 6.55 10.05 6.12 17.00 8.88 10.16 8.38 1.27 4.54 6 IG5_AR1 ActiveIntergenicRegion 0 12.54 5.14 16.98 15.25 18.25 18.57 12.80 13.51 19.89 38.62 13.89 4.60 7.45 32.58 26.23 31.00 21.80 60.35 28.75 34.48 32.77 5.82 17.26 7 ER1a ExonRegion 0 7.59 4.23 5.77 5.64 14.51 13.69 7.07 6.18 17.04 21.71 12.46 10.76 1.99 31.38 18.26 19.00 18.97 34.51 17.54 28.20 22.30 4.08 22.45 8 E1_Da NovelBoundary 0 2.96 0.00 1.15 3.50 0.00 2.67 1.85 2.34 6.71 5.56 7.84 0.00 0.00 4.83 10.75 7.60 4.77 15.17 4.61 12.14 8.90 0.00 4.35 9 E1a_E2b KnownJunction 0 14.67 0.00 6.59 1.96 11.29 2.78 6.09 4.85 10.62 24.74 17.74 0.00 0.00 19.25 22.13 21.96 29.73 14.14 17.13 5.69 33.42 14.45 23.73 10 I1 Intron 0 23.08 17.66 30.22 22.90 23.69 13.01 17.13 20.84 18.69 37.86 8.57 9.61 13.88 16.96 13.09 19.49 11.50 35.44 24.91 25.91 11.62 4.39 9.05 11 I1_SR1 SilentIntronRegion 0 10.08 2.11 6.39 5.91 9.72 3.13 8.24 3.94 7.34 12.22 2.42 3.78 3.35 8.81 10.01 9.85 6.82 14.71 8.77 8.33 8.37 1.86 5.67 12 I1_AR1 ActiveIntronRegion 1 9.26 0.00 18.38 9.71 0.00 0.00 11.92 8.64 11.27 21.79 3.87 0.00 0.00 6.29 23.57 11.89 3.30 30.49 25.48 8.51 8.26 2.08 6.97 13 I1_SR2 SilentIntronRegion 0 11.86 6.40 8.10 7.88 12.60 5.58 14.01 6.46 8.83 11.64 3.16 8.55 10.94 7.88 6.79 9.31 6.06 10.64 10.74 12.17 5.52 2.06 6.26 14 I1_AR3 ActiveIntronRegion 0 35.19 30.50 52.06 38.49 36.84 21.17 23.33 36.04 29.38 63.60 14.22 12.92 19.56 25.66 18.59 29.02 16.35 57.44 39.07 41.37 16.55 6.90 12.05 15 E2_Aa NovelBoundary 0 44.53 18.68 119.66 100.89 31.66 21.64 29.68 66.54 51.24 97.64 20.64 6.30 47.40 30.37 27.20 35.80 40.67 91.24 43.67 76.06 72.34 5.51 31.67 16 ER2a ExonRegion 0 33.18 28.06 69.08 47.31 39.96 31.63 19.42 32.12 30.17 73.31 15.85 9.69 13.02 32.62 29.77 36.41 31.47 92.08 60.03 44.68 30.25 9.21 18.28 17 E2_Ab KnownBoundary 0 23.34 17.96 72.32 42.35 108.23 76.15 15.94 57.50 51.21 96.84 26.64 17.26 14.77 53.15 13.35 72.55 40.21 76.94 52.43 61.10 29.53 3.12 20.83 18 ER2b ExonRegion 0 37.03 33.42 70.05 42.28 77.89 69.40 43.02 53.23 52.72 105.74 40.38 19.14 17.01 85.39 47.61 76.17 62.44 104.01 83.66 70.08 51.43 15.89 32.66 19 E2_Da NovelBoundary 0 3.63 3.22 24.75 13.29 4.33 5.11 5.87 26.45 9.23 20.84 7.37 0.00 0.00 15.72 14.09 21.36 8.23 18.36 9.04 21.60 3.15 5.82 4.35 20 E2a_E3a KnownJunction 0 23.78 36.70 64.84 33.00 27.59 31.35 29.46 39.27 51.97 73.74 25.32 37.81 13.64 91.00 37.46 60.75 16.18 92.77 36.14 58.48 52.08 18.68 14.94 21 I2 Intron 0 3.62 2.85 10.51 7.26 7.07 5.13 5.76 21.23 8.87 28.70 4.21 3.05 2.40 9.54 8.23 8.32 10.26 17.71 7.92 14.22 2.74 0.97 3.65 22 I2_AR1 ActiveIntronRegion 0 1.80 3.46 4.04 6.04 1.34 3.61 4.81 8.53 4.88 17.85 0.81 0.00 2.81 7.01 1.06 9.11 6.77 12.63 3.03 6.31 1.21 0.00 5.48 23 I2_SR1 SilentIntronRegion 0 4.06 2.73 12.04 7.59 8.42 5.51 6.02 24.25 9.84 31.37 5.00 3.76 2.33 10.17 9.90 8.20 11.13 18.98 9.09 16.10 3.11 1.20 3.27 24 E3_Aa NovelBoundary 0 7.33 6.58 33.85 10.95 0.00 7.61 5.52 31.01 19.91 30.33 12.16 6.30 6.01 9.36 17.80 12.65 4.11 34.86 27.11 17.39 2.53 3.12 8.71 25 ER3a ExonRegion 0 20.01 18.91 46.70 27.24 33.97 36.06 20.20 39.24 43.10 67.88 36.79 28.40 10.08 69.92 41.83 65.59 43.63 83.94 55.25 45.46 38.92 17.08 28.00 26 E3_Da NovelBoundary 0 3.48 0.00 21.41 10.02 23.51 26.58 1.99 30.31 15.22 14.67 13.16 0.00 0.00 10.42 15.20 12.30 12.34 31.30 3.95 7.93 2.72 0.00 0.00 27 E3a_E4a KnownJunction 0 17.56 3.22 8.72 6.29 3.57 0.00 4.50 6.90 0.00 6.50 9.37 25.21 0.00 26.61 32.88 58.87 17.48 23.92 16.47 0.00 13.28 2.76 12.21 28 E3a_E5a NovelJunction 0 39.78 9.21 84.92 47.98 15.87 42.82 17.22 33.43 65.45 83.76 15.42 36.76 13.31 34.02 17.80 16.49 37.40 73.99 87.44 49.86 52.39 7.59 22.62 29 I3 Intron 0 1.50 2.53 12.66 4.33 2.38 5.54 4.23 13.27 5.89 18.83 3.43 0.63 1.37 6.82 4.79 11.09 3.52 11.59 8.49 15.12 2.74 0.37 5.74 30 I3_SR1 SilentIntronRegion 0 1.51 2.55 12.74 4.36 2.39 5.58 4.26 13.37 5.93 18.96 3.46 0.64 1.38 6.87 4.83 11.17 3.54 11.66 8.55 15.23 2.76 0.37 5.78 31 E4_Aa NovelBoundary 0 6.52 2.89 20.76 14.08 0.00 10.96 0.00 18.94 7.55 26.57 2.63 0.00 6.82 9.36 8.90 24.01 16.46 34.99 17.69 27.48 0.00 0.00 7.68 32 ER4a ExonRegion 0 11.84 0.75 12.28 7.70 5.95 2.23 4.55 7.71 4.23 11.22 13.03 9.63 9.01 28.29 12.55 25.41 16.84 24.15 12.42 11.76 10.30 5.31 12.87 33 E4_Da NovelBoundary 0 6.59 0.00 26.43 7.33 7.81 12.72 5.92 27.31 12.96 34.68 14.42 12.90 6.66 9.71 0.00 8.03 21.69 39.67 16.19 26.33 5.75 2.33 14.94 34 E4a_E5a KnownJunction 0 19.04 0.00 4.76 3.03 11.88 0.00 1.85 1.93 3.53 5.88 11.74 0.00 0.00 9.59 0.00 4.27 3.55 22.72 13.27 5.62 8.90 2.57 7.77 35 I4_AR1 ActiveIntronRegion 0 0.91 0.14 6.19 4.26 1.79 4.20 4.99 6.66 6.18 11.69 1.38 1.54 1.47 5.99 10.15 12.72 8.48 5.18 8.53 8.11 2.86 3.60 4.75 36 I4_SR1 SilentIntronRegion 0 0.00 2.03 1.13 1.15 5.35 4.66 1.43 0.13 1.71 5.82 1.93 0.00 6.85 9.49 12.94 6.40 6.60 3.41 6.86 1.47 0.00 0.00 2.94 37 E5_Aa NovelBoundary 0 7.48 5.92 31.40 9.02 15.45 16.81 4.06 21.81 8.91 19.56 5.05 0.00 6.82 14.83 0.00 8.72 27.12 23.34 17.51 18.54 3.15 3.12 7.85 38 ER5a ExonRegion 0 26.18 6.88 35.77 24.05 31.82 46.28 19.73 25.62 32.19 56.83 28.37 19.12 7.93 69.24 47.80 57.71 45.51 79.50 59.54 56.00 35.42 20.24 26.74 39 E5_Da NovelBoundary 0 10.52 0.00 14.90 15.45 8.06 0.00 12.63 13.06 24.59 29.79 5.37 0.00 0.00 12.01 6.30 23.33 9.07 30.47 30.49 5.05 0.00 3.12 4.35 40 E5a_E6a KnownJunction 0 34.01 9.21 57.72 43.88 39.90 42.65 12.72 36.88 52.37 79.08 26.32 11.85 20.45 67.40 40.05 40.33 41.89 99.49 22.31 44.68 40.83 21.06 23.82 41 E6_Aa NovelBoundary 0 3.63 6.51 8.19 9.16 0.00 8.12 2.08 11.01 9.75 16.14 9.84 0.00 0.00 2.35 4.45 22.64 3.55 11.57 8.28 9.08 2.47 0.00 0.00 42 ER6a ExonRegion 0 28.23 21.79 51.26 31.58 28.10 19.65 27.19 24.14 47.54 78.87 28.93 13.25 10.43 60.16 36.47 41.33 41.40 89.90 59.84 50.13 50.89 16.18 28.71 43 E6_Da NovelBoundary 0 6.08 0.00 19.75 10.59 12.99 16.18 10.29 14.01 11.37 31.03 17.32 0.00 0.00 21.96 10.75 22.81 8.42 29.85 9.60 18.28 13.65 3.00 0.00 44 E6a_E7a KnownJunction 0 20.08 0.00 11.97 13.98 3.90 2.90 12.45 6.78 11.14 27.51 11.48 0.00 26.30 47.80 34.37 32.13 17.30 39.34 49.22 12.02 17.17 11.45 12.38 45 E6a_E8a KnownJunction 0 0.00 15.52 1.80 4.13 8.66 4.32 2.25 2.55 15.22 13.38 0.00 0.00 7.47 2.47 4.45 0.00 4.02 18.57 4.80 7.93 8.83 0.00 0.00 46 I6 Intron 0 11.01 3.81 12.92 8.46 8.35 8.40 8.54 18.77 11.88 28.82 9.66 7.00 1.95 17.29 11.76 12.99 6.18 28.10 13.26 19.04 12.84 5.20 7.34 47 I6_SR1 SilentIntronRegion 0 12.43 4.38 14.35 9.32 9.14 9.32 9.89 21.27 13.10 31.60 11.32 7.75 2.15 19.10 12.70 14.75 7.06 30.37 15.13 20.08 14.98 5.48 8.46 48 I6_AR1 ActiveIntronRegion 0 2.99 0.54 4.94 3.65 4.01 3.24 0.78 4.47 5.05 13.39 0.00 2.80 0.83 7.17 6.66 2.97 1.17 15.81 2.53 13.83 0.32 3.80 0.86 49 E7_Aa NovelBoundary 0 13.63 6.12 36.28 23.17 12.48 10.68 18.77 35.20 23.76 93.00 11.74 0.00 6.82 14.07 33.50 11.96 27.58 49.95 30.97 32.79 25.21 6.06 0.00 50 ER7a ExonRegion 0 21.39 5.49 19.67 21.52 10.85 19.60 9.10 13.17 12.26 30.83 18.20 12.87 5.64 48.94 51.32 39.51 32.34 49.43 55.73 26.32 28.20 13.50 16.48 51 E7_Da NovelBoundary 0 31.56 8.35 43.38 16.65 4.07 16.58 20.14 37.50 41.81 74.22 7.16 13.50 13.64 67.69 58.10 32.81 51.43 78.97 8.47 26.91 38.05 5.45 24.16 52 E7a_E8a KnownJunction 0 3.11 0.00 12.24 29.27 4.33 9.82 5.87 9.00 7.61 24.47 10.11 0.00 0.00 14.95 28.93 18.46 8.98 28.85 28.89 8.63 19.15 2.57 3.59 53 I7 Intron 0 1.44 1.38 0.00 0.00 3.64 9.98 2.70 0.00 0.00 0.00 6.57 2.42 5.25 24.62 18.45 12.17 15.71 5.03 8.66 14.47 5.99 0.00 2.00 54 I7_AR1 ActiveIntronRegion 0 1.48 1.42 0.00 0.00 3.74 10.25 2.76 0.00 0.00 0.00 6.75 2.49 5.40 25.27 18.92 12.50 16.14 5.16 8.90 14.86 6.16 0.00 2.05 55 E8_Aa NovelBoundary 0 26.75 17.96 54.70 27.17 27.76 40.60 32.72 28.18 44.56 83.30 9.16 11.25 6.17 47.50 54.89 62.12 26.46 96.13 55.53 37.71 25.64 4.84 21.17 56 ER8a ExonRegion 0 30.27 14.81 42.98 38.93 27.50 41.14 21.56 30.99 43.47 74.26 27.56 10.70 11.47 53.85 69.56 54.53 51.11 102.00 76.10 54.40 46.05 18.77 26.30 57 E8_Da NovelBoundary 0 0.00 0.00 7.54 8.56 4.16 0.00 0.00 9.98 4.89 21.81 2.58 0.00 6.82 10.24 4.45 4.36 4.77 28.35 7.62 14.89 0.00 0.00 4.27 58 E8a_E9a KnownJunction 0 20.30 17.96 56.24 46.75 50.34 12.61 23.94 39.68 45.95 78.30 24.43 12.45 0.00 68.69 85.17 72.12 50.96 146.83 70.59 60.15 42.01 14.08 31.41 59 I8 Intron 0 1.14 4.12 14.78 4.93 3.61 5.69 2.86 9.04 7.70 17.98 1.83 2.03 3.25 6.42 5.62 11.63 5.79 18.59 11.17 14.07 2.08 0.84 4.75 60 I8_SR1 SilentIntronRegion 0 1.17 4.24 15.15 5.08 3.72 5.86 2.94 9.31 7.89 18.49 1.88 2.09 3.28 6.61 5.71 11.83 5.96 19.12 11.34 14.45 2.14 0.87 4.85 61 E9_Aa NovelBoundary 0 2.89 3.22 26.17 9.46 8.66 0.00 5.87 9.94 13.34 34.20 2.26 19.96 6.82 0.00 8.90 19.31 4.77 38.55 20.14 24.99 2.78 0.00 0.00 62 ER9a ExonRegion 0 9.10 15.41 32.98 30.24 21.57 21.51 12.56 26.23 33.73 65.52 22.68 11.83 16.68 60.49 64.90 42.93 32.87 72.52 58.62 46.35 30.42 14.80 19.28 63 E9_Da NovelBoundary 1 20.30 27.76 80.36 36.83 37.95 31.00 17.44 38.94 54.02 93.37 16.64 6.90 0.00 61.69 72.07 57.42 11.69 86.35 69.08 74.97 42.07 8.39 20.06 64 E9a_E10a KnownJunction 1 6.67 3.35 9.22 8.62 0.00 0.00 2.25 11.54 7.67 7.66 11.90 0.00 6.82 9.65 42.90 8.54 9.35 6.80 4.71 3.26 8.90 0.00 0.00 65 E9a_E11a KnownJunction 0 0.00 2.50 0.00 3.53 0.00 0.00 2.25 2.55 0.00 2.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.19 4.14 3.26 0.00 0.00 0.00 66 I9 Intron 0 3.64 5.83 3.14 2.33 9.20 12.61 4.55 2.95 7.38 10.77 7.75 4.09 8.85 8.43 14.96 10.22 13.24 7.39 10.95 14.63 12.60 5.97 8.41 67 I9_AR1 ActiveIntronRegion 0 3.72 5.96 3.21 2.38 9.41 12.90 4.66 3.02 7.54 11.01 7.93 4.18 9.06 8.61 15.31 10.42 13.55 7.56 11.20 14.94 12.89 6.11 8.61 68 E10_Aa NovelBoundary 0 41.71 37.16 36.10 16.45 11.63 34.98 20.71 26.86 26.94 44.00 24.69 5.70 13.64 51.33 46.11 23.16 18.42 85.39 53.74 56.82 44.36 11.14 24.24 69 ER10a ExonRegion 0 25.20 17.77 37.90 23.59 25.95 27.19 17.66 21.87 21.45 41.65 22.68 9.83 16.23 40.41 39.01 34.42 18.74 47.93 32.98 27.82 33.07 8.39 15.82 70 E10_Da NovelBoundary 0 19.04 20.52 490.08 180.60 18.76 6.87 9.05 54.30 79.54 130.87 41.33 11.55 6.49 31.49 24.35 18.88 24.31 204.41 26.07 41.48 17.11 8.02 0.00 71 E10_Db NovelBoundary 0 60.16 96.17 134.06 58.40 10.36 39.58 30.83 43.87 35.56 62.56 82.76 42.16 38.80 89.53 157.86 74.85 112.48 52.23 82.07 59.95 48.68 5.08 25.10 72 ER10b ExonRegion 0 2.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 73 Ix Intron 0 56.99 21.78 29.51 26.92 46.80 39.13 39.24 21.38 33.62 61.58 16.53 31.97 34.29 37.58 31.43 37.75 21.84 49.05 39.14 34.97 23.05 18.86 23.73 74 Ix_AR1 ActiveIntronRegion 0 71.80 25.72 36.08 31.01 60.67 44.37 50.32 23.12 41.95 72.62 18.03 43.36 41.56 40.27 32.24 44.00 23.87 42.76 42.15 35.96 19.01 21.38 24.31 75 Ix_AR2 ActiveIntronRegion 0 30.16 15.10 20.82 23.36 25.60 29.30 20.62 16.78 19.68 48.02 14.95 16.19 14.27 32.91 26.25 22.69 17.14 50.31 33.40 28.37 21.98 15.70 25.41 76 Ix_SR2 SilentIntronRegion 0 19.49 10.22 3.99 3.07 31.35 23.74 30.87 2.21 6.04 8.12 4.12 12.88 22.52 13.75 12.91 7.23 7.46 8.03 11.81 9.24 4.60 5.78 4.48 77 Ix_AR3 ActiveIntronRegion 0 71.37 25.50 34.26 29.93 47.98 45.57 41.32 30.22 42.22 71.68 19.31 32.69 49.06 45.82 43.32 54.22 28.47 77.18 49.30 50.86 41.09 21.58 26.48 78 Ix Intron 0 33.88 12.94 33.58 27.86 18.62 35.37 17.11 25.09 28.00 64.74 20.95 8.56 11.05 34.55 46.81 48.46 26.91 112.84 38.95 35.32 39.21 12.43 21.60 79 Ix_AR1 ActiveIntronRegion 0 34.01 12.99 33.72 27.97 18.69 35.51 17.18 25.19 28.11 64.98 21.03 8.59 11.09 34.68 46.99 48.65 27.01 113.27 39.10 35.46 39.36 12.48 21.69 80 E11_Aa NovelBoundary 0 43.93 14.34 64.63 41.82 35.57 26.75 7.60 29.78 44.53 96.78 18.90 6.30 6.82 45.26 34.49 71.26 40.21 73.83 21.18 47.49 33.30 10.72 23.56 81 ER11a ExonRegion 0 15.04 9.20 19.69 17.75 8.38 25.38 9.31 11.14 19.62 44.66 8.65 1.60 7.28 23.76 35.07 35.67 20.67 60.70 46.58 33.59 31.39 12.12 5.26