Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 BTBD12 Gene 0 15.18 22.43 27.26 16.23 13.83 14.55 17.48 25.69 28.40 40.92 36.02 25.18 27.87 76.57 56.65 79.98 52.68 61.77 25.36 39.26 21.04 9.24 15.95 2 294008 Transcript 0 12.20 16.58 26.75 14.92 9.74 15.42 14.81 27.62 28.87 44.64 35.99 15.88 18.54 80.12 61.78 79.75 56.89 62.57 26.26 35.95 17.08 7.43 13.62 3 486524 Transcript 1 19.86 26.56 14.06 8.09 13.36 11.13 17.04 12.15 13.32 16.37 7.43 21.94 21.66 19.57 25.69 22.91 19.60 26.63 34.10 30.30 9.63 7.00 16.04 4 466154 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 IG4_AR2 ActiveIntergenicRegion 0 5.86 1.17 7.32 3.75 12.38 10.65 23.32 4.94 4.74 6.09 3.58 2.82 7.63 5.33 11.92 14.10 2.74 6.30 5.04 6.55 4.27 1.20 4.64 6 IG4_AR1 ActiveIntergenicRegion 0 18.19 4.28 7.23 6.61 23.67 22.11 21.53 7.83 7.16 15.04 6.69 0.00 2.32 29.99 15.08 25.57 19.05 14.99 29.94 13.67 14.15 2.30 9.40 7 ER1a ExonRegion 0 6.65 4.79 0.00 0.00 3.06 5.11 5.77 0.99 0.71 1.15 4.42 0.00 0.00 8.35 5.39 13.37 5.89 1.45 9.10 0.91 1.57 0.30 0.00 8 E1a_E2a KnownJunction 0 78.53 44.20 7.13 0.00 11.54 18.46 71.85 8.50 9.09 23.48 25.01 0.00 0.00 77.58 54.14 118.17 58.81 24.13 45.84 28.95 17.92 13.96 23.39 9 ER1b ExonRegion 0 29.63 22.13 2.60 0.00 6.42 11.00 35.16 5.39 6.03 13.76 16.16 0.00 0.00 43.66 40.04 59.20 36.44 15.67 24.97 13.79 11.46 5.58 8.57 10 ER2a ExonRegion 1 13.81 16.82 12.10 4.08 16.75 12.95 25.58 16.55 14.51 26.74 22.69 37.28 33.24 53.45 41.80 86.91 43.23 34.61 28.93 35.95 8.64 8.73 14.51 11 E2_Ab KnownBoundary 1 7.41 17.83 17.50 5.06 35.65 32.59 74.68 15.03 21.35 32.05 28.69 35.41 51.94 72.28 17.80 38.88 46.47 25.49 13.46 42.12 8.40 3.06 4.27 12 ER2b ExonRegion 1 23.20 34.68 25.59 15.52 21.98 15.67 34.30 25.55 27.47 42.54 42.46 64.26 52.42 91.73 53.55 94.43 63.26 65.39 30.91 57.49 21.13 9.07 22.33 13 E2a_E3a KnownJunction 1 12.82 21.25 26.02 16.45 26.66 16.24 23.98 25.67 24.51 47.38 52.01 42.76 38.63 115.31 36.34 95.36 68.44 38.18 43.39 55.86 16.56 19.35 10.67 14 E3_Aa NovelBoundary 0 13.41 5.85 0.00 0.00 4.24 0.00 5.87 13.23 7.29 6.98 0.00 6.30 0.00 0.00 0.00 12.56 3.93 7.50 8.47 3.26 0.00 0.00 0.00 15 ER3a ExonRegion 0 15.53 27.36 14.19 12.01 14.63 20.01 24.00 18.61 24.86 35.01 48.17 34.52 41.00 83.87 48.41 97.72 62.31 51.76 41.65 45.33 15.16 9.01 17.53 16 E3_Da NovelBoundary 0 0.00 3.35 1.36 8.66 8.57 0.00 0.00 5.09 8.77 7.39 8.48 0.00 6.82 9.12 13.35 17.17 4.58 6.14 12.80 15.72 17.61 3.00 0.00 17 E3a_E4a KnownJunction 0 20.74 18.22 11.03 3.53 0.00 9.88 17.49 13.72 14.99 21.92 47.64 25.21 45.61 65.98 18.42 88.69 52.45 30.55 0.00 16.87 5.50 5.08 3.24 18 I3 Intron 0 3.95 10.17 5.66 6.45 3.40 2.46 4.55 7.21 4.54 4.66 3.18 2.91 6.42 3.72 6.47 12.65 9.74 19.99 9.16 15.89 7.90 1.17 5.81 19 I3_SR1 SilentIntronRegion 0 3.96 10.19 5.67 6.45 3.40 2.47 4.55 7.22 4.54 4.66 3.18 2.91 6.43 3.72 6.48 12.67 9.75 20.02 9.17 15.91 7.91 1.17 5.82 20 E4_Aa NovelBoundary 0 23.71 15.33 8.66 13.85 12.22 0.00 7.77 5.09 5.09 11.87 5.00 0.00 0.00 9.54 0.00 0.00 3.93 30.80 7.91 20.20 12.36 0.00 10.93 21 ER4a ExonRegion 0 17.19 25.63 18.01 10.86 20.58 16.73 23.94 28.61 34.00 43.65 40.39 20.53 18.46 93.72 44.27 94.12 80.00 95.54 24.69 47.55 19.23 10.18 22.09 22 E4_Da KnownBoundary 0 5.78 9.01 15.35 8.06 19.61 39.98 12.59 16.10 17.30 12.79 14.11 6.30 6.33 14.60 4.45 28.03 11.97 57.45 13.37 20.71 11.12 8.57 6.91 23 E4a_E4b KnownJunction 0 17.04 5.66 8.25 5.06 8.40 8.23 5.26 14.99 19.27 28.18 49.85 17.86 13.64 52.15 22.62 60.33 60.21 42.90 13.65 13.04 14.39 6.00 15.96 24 ER4b ExonRegion 0 12.11 26.21 20.11 14.00 11.66 6.88 16.79 20.94 20.71 19.82 13.56 21.43 24.66 28.25 19.32 50.08 25.79 45.09 19.70 29.36 10.99 7.44 14.00 25 E4_Ab KnownBoundary 0 21.49 6.71 10.26 16.61 12.73 4.94 10.38 24.93 17.82 8.81 18.48 37.96 0.00 41.79 8.90 46.48 40.95 50.32 17.13 27.48 14.52 2.63 8.19 26 ER4c ExonRegion 0 10.20 30.01 17.02 13.79 12.56 17.95 18.24 19.18 29.95 47.73 48.82 36.58 25.49 81.40 50.87 87.13 69.33 76.65 35.40 46.64 27.88 6.45 20.58 27 E4_Db KnownBoundary 1 10.00 15.26 11.44 7.09 8.66 5.22 5.92 8.95 7.09 21.89 0.00 35.71 0.00 6.89 0.00 22.99 13.93 17.16 8.66 11.82 8.96 3.12 4.27 28 E4b_E5a KnownJunction 0 13.34 3.35 8.96 7.06 4.16 0.00 3.80 14.29 23.41 38.04 26.69 49.52 40.26 55.09 38.32 124.67 47.97 84.19 52.24 46.72 19.27 3.00 24.84 29 ER4d ExonRegion 1 19.86 26.56 14.06 8.09 13.36 11.13 17.04 12.15 13.32 16.37 7.43 21.94 21.66 19.57 25.69 22.91 19.60 26.63 34.10 30.30 9.63 7.00 16.04 30 E4_Dc NovelBoundary 0 136.54 55.45 24.19 26.67 65.87 29.93 79.18 19.30 23.06 21.41 38.69 23.41 32.47 9.24 5.81 26.32 12.53 17.91 34.82 38.93 10.26 30.98 24.33 31 I4 Intron 0 4.04 5.59 6.31 5.05 4.55 2.83 3.85 5.39 8.62 9.84 4.65 4.55 4.32 14.59 12.94 18.59 10.80 18.05 7.00 10.13 5.99 1.74 4.38 32 I4_SR1 SilentIntronRegion 0 4.05 5.59 6.31 5.05 4.55 2.83 3.85 5.39 8.63 9.84 4.66 4.55 4.33 14.60 12.95 18.60 10.80 18.06 7.01 10.14 6.00 1.75 4.38 33 E5_Aa NovelBoundary 0 14.15 6.31 5.38 6.96 10.87 8.18 7.95 9.86 11.31 14.29 0.00 6.30 6.82 40.61 4.45 18.54 8.51 8.50 4.14 11.19 5.99 0.00 7.77 34 ER5a ExonRegion 0 8.48 10.06 11.12 13.33 6.09 11.33 11.71 24.45 27.14 43.30 39.50 23.08 23.70 101.69 58.45 84.51 57.77 61.09 29.45 34.21 25.10 14.14 16.72 35 E5a_E6a KnownJunction 0 44.97 36.31 21.26 19.64 50.08 30.78 32.81 39.43 34.95 55.66 78.44 25.06 43.02 145.33 82.33 230.37 122.95 89.91 98.36 56.89 57.27 42.86 38.07 36 E6_Aa NovelBoundary 0 7.48 15.26 1.83 2.03 4.16 2.50 12.90 5.09 3.27 9.75 8.00 0.00 0.00 9.59 16.69 43.24 8.88 24.33 17.88 6.33 5.87 0.00 7.68 37 ER6a ExonRegion 0 5.81 10.71 15.42 7.78 8.91 9.46 10.76 17.11 16.91 35.17 33.21 16.68 29.37 79.91 49.45 80.18 51.01 58.32 20.43 33.12 20.89 9.60 10.24 38 E6a_E7a KnownJunction 0 0.00 6.64 9.40 6.93 0.00 13.51 8.66 8.38 10.76 19.64 12.95 18.31 6.82 44.74 46.11 48.53 15.71 35.57 3.95 23.46 11.80 5.57 4.01 39 ER7a ExonRegion 0 4.10 5.15 10.52 5.00 3.97 7.46 5.08 10.18 9.62 17.36 16.95 4.90 5.82 55.75 38.76 31.11 25.15 32.67 7.94 25.88 18.85 5.25 3.64 40 E7a_E8a KnownJunction 0 3.70 8.95 14.55 2.06 11.71 5.34 4.24 4.11 17.53 31.08 25.48 0.00 13.47 66.98 35.85 46.06 46.56 47.26 35.67 20.71 27.80 10.53 4.35 41 ER8a ExonRegion 1 3.93 7.03 24.86 3.76 1.45 3.20 3.32 11.52 18.29 25.09 29.44 0.94 4.80 63.20 40.27 41.04 26.25 48.35 16.46 28.74 20.44 3.11 11.85 42 E8b_E9a KnownJunction 0 3.04 2.43 28.27 2.03 0.00 18.34 13.87 18.11 20.83 35.43 20.22 29.11 18.51 71.11 70.96 55.37 35.72 61.23 24.85 30.87 0.00 0.00 16.05 43 ER8b ExonRegion 0 4.23 4.41 21.65 2.73 0.00 9.17 10.15 11.52 15.44 29.05 25.45 7.94 4.69 80.94 57.06 54.98 36.31 58.20 27.08 25.89 5.14 0.00 9.79 44 ER9a ExonRegion 0 9.75 5.23 25.80 5.72 8.68 7.77 11.81 20.75 25.32 38.91 40.72 18.61 13.50 67.31 59.39 68.40 51.18 64.34 32.24 35.74 19.85 3.49 10.11 45 E9a_E10a KnownJunction 1 3.70 15.66 19.13 10.39 23.60 16.75 25.13 18.44 20.72 37.74 31.43 27.91 32.14 75.76 66.38 76.39 16.92 36.27 26.54 34.45 8.53 2.45 15.62 46 ER10a ExonRegion 0 10.18 10.02 26.33 11.00 9.02 12.75 13.55 27.17 32.87 29.29 35.68 14.08 11.01 93.95 65.13 69.18 42.65 62.19 24.89 43.57 20.66 3.21 15.54 47 E10a_E11a KnownJunction 0 7.04 8.55 31.70 18.78 14.52 2.56 6.62 23.70 22.95 32.83 31.90 0.00 12.17 115.49 80.10 71.18 59.56 44.23 9.22 47.11 14.15 2.33 0.00 48 ER11a ExonRegion 0 13.45 22.93 31.19 17.07 12.72 17.86 16.59 29.68 34.84 49.22 45.33 22.40 30.08 94.61 65.34 87.40 58.85 70.96 25.43 42.80 27.15 10.26 15.79 49 E11a_E12a KnownJunction 0 37.41 43.22 32.11 35.16 7.64 22.32 29.81 72.00 53.04 90.09 51.01 12.60 26.46 138.91 96.92 187.22 120.62 88.63 70.97 67.24 31.51 14.27 17.07 50 ER12a ExonRegion 0 13.93 29.24 39.05 24.92 15.87 30.85 26.07 51.75 46.02 75.21 40.67 18.07 43.71 118.18 97.01 119.81 98.45 94.45 36.15 50.15 19.98 14.30 12.94 51 E12a_E13a KnownJunction 0 17.56 48.35 36.78 21.54 7.13 23.62 18.55 35.41 50.32 80.05 53.65 25.06 19.48 85.17 55.38 92.71 88.17 115.57 40.75 46.02 22.80 26.76 23.90 52 ER13a ExonRegion 0 13.62 21.12 45.47 31.31 14.82 20.77 16.43 39.17 38.04 71.77 44.14 21.19 33.24 97.05 74.59 116.19 83.74 100.31 27.41 40.05 28.69 7.96 24.42 53 E13_Da NovelBoundary 0 11.26 17.30 26.17 6.66 7.81 9.82 13.69 13.14 20.23 19.80 16.90 0.00 0.00 33.61 14.09 46.14 17.30 20.56 4.42 12.72 11.68 0.00 7.34 54 E13a_E14a KnownJunction 0 3.78 5.66 15.64 13.32 4.33 20.56 10.42 20.66 20.08 25.06 26.80 6.30 0.00 26.55 31.65 37.94 42.73 38.43 4.42 27.29 20.20 8.63 12.46 55 I13 Intron 1 9.91 12.61 22.65 7.45 9.82 5.34 7.20 7.82 13.05 22.28 18.83 3.74 4.92 38.22 25.23 43.63 17.54 59.99 11.69 19.12 9.76 1.59 7.80 56 I13_SR1 SilentIntronRegion 1 9.96 12.67 22.75 7.49 9.87 5.36 7.24 7.86 13.11 22.39 18.93 3.76 4.95 38.41 25.35 43.85 17.63 60.28 11.75 19.21 9.80 1.60 7.84 57 E14_Aa NovelBoundary 1 7.26 5.85 30.01 11.89 28.35 2.44 17.62 7.85 17.42 29.20 20.37 6.30 6.82 46.56 42.77 58.28 8.88 59.40 17.79 9.40 8.59 6.25 3.76 58 ER14a ExonRegion 0 21.59 21.49 39.90 24.73 16.36 14.64 12.08 29.93 32.55 45.64 38.60 17.01 19.49 76.31 78.79 85.77 52.38 59.42 21.12 34.14 21.62 11.48 14.59 59 IG3_AR2 ActiveIntergenicRegion 0 4.51 4.96 10.45 14.79 4.83 13.92 4.30 7.34 1.79 12.96 0.00 0.00 0.76 0.47 2.09 2.75 1.81 21.58 2.23 8.85 2.42 0.63 0.22 60 IG3_SR2 SilentIntergenicRegion 0 2.06 7.47 8.68 7.85 8.83 7.07 3.64 6.78 6.09 20.25 1.25 0.66 0.54 4.58 4.16 3.77 2.32 18.16 7.77 7.86 3.08 2.43 0.51 61 IG3_AR1 ActiveIntergenicRegion 0 7.84 16.16 10.42 10.94 8.23 10.03 3.12 11.57 7.43 21.61 0.40 1.58 0.00 4.36 5.72 7.47 5.36 19.64 9.84 7.43 3.97 1.10 1.97