Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CIITA Gene 0 127.27 4.01 3.72 10.37 56.48 14.54 24.30 20.14 29.19 6.63 143.79 42.46 101.90 186.77 100.06 261.94 258.05 4.61 4.61 5.37 3.24 4.34 5.26 2 324288 Transcript 0 124.71 1.10 3.27 5.51 49.44 11.43 18.19 18.53 35.45 2.78 172.28 52.95 141.34 208.86 116.25 321.93 293.84 1.17 1.10 1.38 1.46 3.12 1.16 3 388910 Transcript 0 198.38 0.23 2.63 5.56 40.12 15.15 7.92 11.83 21.11 4.85 141.55 54.17 122.55 213.63 110.08 300.30 288.87 0.56 2.09 0.07 0.18 3.20 0.73 4 381835 Transcript 0 15.18 0.00 0.57 0.12 2.56 0.20 0.65 1.40 2.17 0.38 8.90 11.88 5.89 26.69 13.89 31.40 20.93 0.00 1.46 0.36 0.00 0.04 0.00 5 IG20_SR4 SilentIntergenicRegion 0 10.52 0.21 0.00 0.63 2.70 0.34 0.82 2.01 3.42 0.41 1.07 0.92 0.96 0.37 1.45 1.24 2.82 0.08 0.00 0.00 0.36 0.10 0.18 6 IG20_AR5 ActiveIntergenicRegion 0 11.52 0.08 0.00 0.44 1.62 0.10 0.57 1.23 1.97 1.12 1.65 0.00 1.24 0.46 1.10 1.91 1.77 0.36 0.00 0.00 0.08 0.28 0.00 7 IG20_AR7 ActiveIntergenicRegion 0 11.99 0.00 0.00 1.86 4.55 0.00 1.57 2.74 2.49 0.88 0.00 0.00 0.00 0.00 0.00 1.98 1.71 0.00 0.00 0.00 0.00 0.00 0.00 8 ER1a ExonRegion 0 2.49 0.00 0.00 0.08 2.20 1.94 1.01 0.00 0.00 0.00 2.50 0.00 0.00 1.24 0.17 5.42 0.97 0.00 0.00 0.00 0.00 0.00 0.00 9 ER1b ExonRegion 1 154.54 0.00 0.51 1.32 26.87 5.41 8.84 3.97 7.79 0.47 121.05 8.80 29.59 104.65 57.41 207.71 251.19 0.00 0.00 0.00 0.00 0.54 0.81 10 E1a_E2a KnownJunction 1 19.56 0.00 0.00 2.96 4.33 0.00 2.12 8.30 10.42 0.00 255.01 18.61 25.65 119.49 34.37 112.45 507.62 0.00 0.00 0.00 0.00 0.00 0.00 11 I1_AR1 ActiveIntronRegion 0 35.29 0.00 0.60 1.12 7.23 5.06 1.15 1.17 1.25 0.00 18.81 4.21 6.21 34.81 36.15 37.95 26.09 0.00 0.00 0.00 0.77 0.42 0.00 12 I1_AR3 ActiveIntronRegion 0 33.13 0.71 0.00 2.11 9.94 1.25 5.67 3.90 2.31 2.20 1.36 3.81 16.25 7.56 6.27 32.07 25.96 0.00 0.00 0.00 0.00 0.00 0.00 13 ER2a ExonRegion 0 67.71 0.00 1.05 3.27 35.68 7.86 10.58 17.85 28.96 2.85 211.84 31.60 95.97 318.52 144.35 498.93 399.14 0.00 0.00 0.00 1.53 2.93 2.50 14 E2a_E3a KnownJunction 0 125.13 0.00 2.60 0.00 92.11 11.81 27.56 15.90 35.65 1.24 227.37 61.67 231.80 282.07 156.13 345.72 419.45 0.00 0.00 0.00 0.00 0.00 7.60 15 E2a_E4a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.42 0.00 0.00 6.00 0.00 0.00 0.00 12.65 4.02 0.00 0.00 0.00 0.00 0.00 0.00 16 E3_Aa NovelBoundary 0 42.75 0.00 0.00 4.86 22.33 0.00 5.65 4.44 9.37 1.26 4.95 0.00 32.30 29.14 8.90 24.35 55.45 0.00 0.00 0.00 0.00 0.00 0.00 17 ER3a ExonRegion 0 124.68 0.38 0.46 7.61 65.33 8.94 22.05 21.84 32.14 5.83 240.14 60.79 198.06 266.68 136.36 293.34 449.92 0.00 1.69 0.00 1.17 4.17 2.42 18 E3a_E4a KnownJunction 1 221.82 3.22 1.15 12.05 67.91 10.33 15.68 18.20 43.08 4.92 296.13 24.91 215.73 313.26 184.93 369.22 539.69 0.00 0.00 0.00 0.00 11.70 0.00 19 E3a_E6a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.48 0.00 0.00 0.00 0.00 7.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 I3 Intron 0 18.60 0.00 0.22 1.60 6.96 0.43 3.29 2.33 2.83 0.20 4.95 9.36 23.23 7.69 8.67 28.35 37.73 0.00 0.38 0.08 0.00 0.08 0.58 21 I3_AR2 ActiveIntronRegion 0 21.14 0.00 0.64 2.26 4.97 0.64 3.12 2.97 4.71 0.56 5.44 9.41 20.86 8.62 6.28 32.04 46.61 0.00 0.56 0.00 0.00 0.00 1.55 22 I3_SR2 SilentIntronRegion 1 14.08 0.00 0.25 1.13 4.45 0.51 2.75 3.21 1.79 0.00 2.68 10.91 36.28 7.26 6.65 18.12 29.73 0.00 0.00 0.29 0.00 0.00 0.00 23 ER4a ExonRegion 0 373.85 2.71 3.85 11.36 69.95 19.91 24.50 26.37 43.99 6.90 326.75 104.32 271.28 382.11 195.72 457.42 552.09 0.00 0.00 0.00 1.40 7.31 3.54 24 E4a_E5a KnownJunction 0 287.09 0.00 2.54 7.49 53.82 23.34 7.51 11.83 25.72 6.29 184.42 67.97 156.00 278.89 152.05 391.01 363.07 0.00 0.00 0.00 0.00 5.08 0.00 25 E4a_E5b KnownJunction 0 225.60 0.00 1.18 5.89 28.52 10.79 24.33 18.81 29.02 6.90 167.83 82.38 207.78 247.81 117.19 220.03 283.50 0.00 0.00 0.00 2.59 0.00 7.68 26 ER5a ExonRegion 0 276.21 0.00 3.98 9.20 62.21 20.17 11.25 15.12 31.19 6.88 214.07 88.75 195.81 315.89 154.49 404.95 439.02 0.00 0.00 0.00 0.55 4.17 2.20 27 ER5b ExonRegion 0 358.05 0.00 1.78 15.72 85.87 21.27 21.06 38.81 50.90 9.34 376.24 151.31 334.03 488.82 220.95 687.02 640.16 0.00 0.00 0.00 0.29 5.87 2.90 28 E5_Da NovelBoundary 0 89.20 0.00 0.00 3.20 33.36 2.84 8.92 1.73 5.32 3.01 4.84 0.00 40.09 18.48 38.32 124.92 116.04 0.00 0.00 0.00 0.00 0.00 3.24 29 E5a_E6a KnownJunction 0 376.07 0.00 1.51 10.39 41.17 9.82 14.62 51.88 53.88 8.68 337.77 111.04 386.50 457.53 237.96 641.03 637.59 0.00 0.00 0.00 0.00 5.63 0.00 30 E5a_E8a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.21 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 13.33 0.00 0.00 0.00 0.00 0.00 0.00 4.35 31 I5 Intron 0 21.97 0.17 0.15 1.49 21.00 2.55 9.74 2.32 2.41 0.70 8.84 10.51 22.89 13.77 17.28 52.96 43.71 0.15 0.52 0.35 0.18 0.00 0.24 32 I5_SR1 SilentIntronRegion 0 19.26 0.24 0.22 0.49 27.24 2.63 11.57 2.47 2.42 0.20 8.32 12.23 25.76 13.78 18.06 48.39 37.15 0.22 0.76 0.51 0.26 0.00 0.35 33 I5_AR1 ActiveIntronRegion 0 28.09 0.00 0.00 3.70 7.66 2.39 5.86 2.01 2.39 1.78 10.06 6.89 16.87 13.86 15.76 63.42 58.41 0.00 0.00 0.00 0.00 0.00 0.00 34 ER6a ExonRegion 0 260.00 0.00 5.04 11.78 42.34 19.97 18.83 30.92 45.48 6.40 326.36 124.98 317.15 409.78 197.54 588.35 535.26 0.00 0.00 0.00 3.48 6.76 2.94 35 E6a_E7a KnownJunction 0 242.64 0.00 5.12 7.89 35.74 13.29 20.89 8.87 33.22 3.20 234.69 78.63 195.77 240.10 163.17 423.39 358.11 0.00 0.00 0.00 3.03 5.45 0.00 36 E6a_E8a KnownJunction 0 13.48 0.00 1.18 2.06 7.64 8.29 6.09 5.91 5.99 1.13 52.22 5.85 55.03 81.76 48.21 105.61 122.30 0.00 0.00 0.00 2.72 0.00 0.00 37 I6 Intron 0 27.49 0.00 0.97 2.38 6.55 0.59 2.82 6.31 10.19 0.36 20.58 6.84 24.73 27.02 28.67 91.14 89.27 0.00 1.02 0.00 0.00 0.67 1.25 38 I6_AR1 ActiveIntronRegion 0 27.60 0.00 0.98 2.39 6.58 0.59 2.83 6.33 10.23 0.37 20.67 6.87 24.84 27.13 28.79 91.51 89.64 0.00 1.02 0.00 0.00 0.67 1.26 39 E7_Aa NovelBoundary 0 39.12 0.00 1.39 0.00 14.69 2.21 6.76 2.46 19.65 2.31 54.28 12.45 72.88 67.75 37.95 137.91 140.91 0.00 0.00 0.00 0.00 0.00 0.00 40 ER7a ExonRegion 0 119.07 0.71 2.98 5.95 50.46 15.28 16.27 23.01 49.42 2.47 214.71 78.70 238.20 308.67 162.04 439.51 415.87 0.00 0.00 0.00 1.02 3.49 0.00 41 E7a_E8a KnownJunction 0 118.02 0.00 6.65 4.13 117.23 14.93 32.77 43.83 75.78 0.00 355.35 83.28 321.57 417.63 162.56 630.86 621.97 0.00 0.00 0.00 0.00 2.51 0.00 42 ER8a ExonRegion 1 137.16 0.72 4.82 7.08 69.05 13.97 14.52 44.83 68.81 5.81 373.40 154.18 508.84 506.70 252.87 853.85 699.74 0.00 2.26 0.00 1.71 4.28 2.16 43 E8a_E9a KnownJunction 0 311.24 3.29 0.00 6.86 51.53 32.14 23.23 66.66 75.66 8.30 656.22 198.66 589.57 584.91 275.30 941.89 1114.54 0.00 0.00 0.00 2.47 0.00 0.00 44 ER9a ExonRegion 0 251.83 0.00 2.28 7.50 44.42 20.06 20.33 31.59 48.17 7.58 371.12 119.55 424.72 401.39 185.82 583.37 631.33 0.00 0.00 0.00 4.83 4.26 2.21 45 E9a_E10a KnownJunction 0 670.56 0.00 0.00 14.75 120.12 23.57 23.41 42.22 57.84 7.01 504.34 141.65 637.78 560.37 463.32 1248.39 815.61 0.00 0.00 0.00 0.00 13.84 4.35 46 ER10a ExonRegion 1 137.76 0.00 0.00 6.85 45.37 10.76 15.24 22.34 35.96 5.47 235.53 71.09 432.30 340.05 167.85 490.44 413.38 0.00 0.00 0.00 0.57 3.44 1.23 47 E10a_E11a KnownJunction 1 47.56 0.00 0.00 5.79 54.33 4.88 14.57 10.06 24.88 4.06 174.52 67.37 276.44 274.71 101.98 341.88 307.06 0.00 0.00 0.00 3.03 5.51 0.00 48 E10a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 ER11a ExonRegion 0 71.97 0.13 1.63 7.19 29.97 9.82 11.97 15.50 25.67 4.03 165.18 30.08 80.59 255.25 120.78 332.68 320.44 0.53 0.73 0.18 1.34 4.46 1.09 50 E11_Da KnownBoundary 0 30.67 0.00 6.09 0.00 28.35 0.00 4.24 6.41 11.00 4.35 17.32 24.76 19.97 36.38 23.86 64.17 77.98 2.11 4.80 2.94 0.00 3.12 0.00 51 E11a_E12a NovelJunction 0 13.56 0.00 0.00 0.00 4.07 0.00 2.21 0.00 1.79 0.00 17.90 0.00 0.00 22.01 22.25 26.83 42.45 0.00 0.00 0.00 0.00 0.00 0.00 52 E11a_E12b KnownJunction 1 130.84 0.00 0.00 3.20 23.77 7.50 7.82 16.63 26.94 3.33 139.82 38.71 12.01 188.59 151.68 311.29 222.16 0.00 0.00 0.00 0.00 3.00 0.00 53 ER11b ExonRegion 0 31.84 0.69 1.37 0.00 4.34 1.93 4.99 8.52 6.43 1.38 26.15 5.79 15.85 46.10 23.69 104.93 64.52 1.68 6.28 0.22 0.00 0.36 0.00 54 E11_Db NovelBoundary 0 41.79 0.00 7.86 0.00 17.32 0.00 2.25 13.18 8.22 2.28 60.23 11.85 18.83 44.09 19.78 113.22 169.80 0.00 0.00 0.00 0.00 0.00 0.00 55 I11 Intron 0 27.46 1.08 0.97 1.44 16.17 0.98 5.88 4.58 3.27 1.21 25.76 8.69 49.51 35.74 21.20 86.62 81.53 0.00 2.83 0.38 0.00 0.37 0.52 56 I11_AR1 ActiveIntronRegion 0 27.55 1.09 0.98 1.45 16.22 0.98 5.90 4.59 3.28 1.22 25.85 8.72 49.69 35.87 21.27 86.92 81.82 0.00 2.84 0.38 0.00 0.37 0.52 57 E12_Aa NovelBoundary 0 66.31 0.00 0.00 3.36 8.66 0.00 4.90 6.82 8.48 1.56 23.85 19.36 19.64 51.62 30.04 137.40 116.97 0.00 0.00 0.00 0.00 0.00 0.00 58 ER12a ExonRegion 0 30.35 0.00 1.15 0.23 5.12 0.39 1.30 2.79 4.34 0.76 17.81 23.77 11.77 53.39 27.78 62.79 41.86 0.00 2.91 0.72 0.00 0.09 0.00 59 E12_Ab KnownBoundary 1 71.64 0.00 1.83 0.00 10.78 0.00 1.90 7.02 8.19 1.56 28.80 63.17 26.46 77.58 27.32 113.99 93.13 0.00 3.76 2.94 0.00 0.00 0.00 60 ER12b ExonRegion 1 163.68 0.00 0.84 10.96 54.46 9.32 23.70 27.39 34.69 4.06 232.89 52.17 57.97 299.85 133.57 450.78 442.59 0.00 1.19 0.47 0.75 3.03 1.15 61 E12a_E13a KnownJunction 0 234.26 0.00 0.00 11.15 110.61 17.04 34.89 35.69 40.34 3.22 263.91 62.42 86.84 384.19 136.60 752.45 398.50 0.00 0.00 0.00 0.00 2.51 3.59 62 ER13a ExonRegion 1 135.75 0.00 2.35 14.40 52.81 13.09 21.50 31.98 47.02 4.30 282.07 52.13 54.07 334.25 175.32 631.70 520.58 0.00 0.00 1.51 1.47 4.51 7.42 63 E13a_E14a KnownJunction 1 165.96 0.00 2.25 13.58 53.23 16.52 30.34 32.65 51.85 5.24 296.65 30.16 24.35 288.78 161.44 464.49 572.42 0.00 0.00 0.00 0.00 5.63 11.35 64 ER14a ExonRegion 1 124.93 1.28 1.71 7.55 54.80 15.64 19.03 24.58 42.51 3.68 285.81 37.84 48.46 376.49 161.86 518.65 538.37 0.00 0.00 0.00 0.00 2.29 4.10 65 E14a_E15a KnownJunction 1 168.03 0.00 4.02 10.95 66.89 10.05 27.51 15.85 37.62 7.25 253.96 42.16 57.79 408.85 175.91 512.00 442.54 0.00 0.00 0.00 0.00 0.00 0.00 66 E14a_E16a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.55 0.00 0.00 9.48 0.00 0.00 2.24 4.45 6.49 26.83 0.00 0.00 0.00 0.00 0.00 0.00 67 ER15a ExonRegion 1 203.19 0.09 1.79 15.45 67.58 22.74 27.60 26.74 44.17 5.56 273.83 29.24 78.32 343.28 167.93 719.16 478.03 0.00 5.17 0.00 0.00 4.39 4.61 68 E15a_E16a KnownJunction 1 281.24 0.00 0.00 17.61 119.10 47.02 37.01 26.41 36.72 1.13 200.63 18.61 101.94 361.24 153.41 583.35 438.71 0.00 0.00 0.00 0.00 0.00 0.00 69 ER16a ExonRegion 1 224.67 2.29 1.97 11.67 67.05 29.57 30.51 31.03 29.74 5.02 235.81 19.96 86.58 386.52 158.03 547.83 468.58 0.00 0.07 0.00 0.00 1.41 3.85 70 E16a_E17a KnownJunction 1 282.49 0.00 0.00 4.93 75.81 14.82 16.03 31.96 40.88 5.43 198.10 18.01 65.58 382.72 172.32 508.58 471.06 0.00 0.00 0.00 0.00 0.00 0.00 71 I16_SR1 SilentIntronRegion 0 18.09 1.00 0.38 2.00 11.55 1.28 6.42 3.93 3.71 2.32 6.99 5.94 21.27 11.32 13.57 47.14 35.56 0.23 2.23 0.70 0.19 0.17 0.36 72 ER17a ExonRegion 1 212.74 0.00 0.79 10.69 84.41 16.72 20.96 28.79 35.11 8.33 194.79 23.66 64.93 321.67 169.17 434.21 383.89 0.00 0.00 0.00 1.34 1.66 5.17 73 E17a_E18a KnownJunction 1 212.41 0.00 3.28 6.53 107.89 2.16 12.98 27.81 21.47 7.87 228.64 19.51 80.35 335.34 149.70 425.36 369.80 0.00 0.00 0.00 0.00 2.88 0.00 74 ER18a ExonRegion 0 194.44 0.00 2.32 7.41 61.83 8.86 16.71 26.42 22.60 5.09 187.45 29.89 88.83 298.28 149.31 393.74 404.63 0.00 0.00 0.00 1.34 5.51 0.00 75 E18_Da NovelBoundary 0 37.78 0.00 1.83 3.80 12.48 0.00 9.58 11.21 16.17 0.00 16.58 0.00 21.75 31.73 53.65 69.64 94.44 0.00 0.00 0.00 0.00 0.00 4.10 76 E18a_E19a KnownJunction 0 323.24 0.00 1.51 14.48 74.02 26.52 28.62 40.75 32.99 4.16 208.58 42.91 75.32 302.79 185.92 479.96 416.83 0.00 0.00 0.00 0.00 2.82 0.00 77 I18_AR1 ActiveIntronRegion 0 23.19 1.54 0.00 1.53 10.11 2.08 3.00 0.97 4.17 0.00 21.91 13.28 21.47 27.90 14.83 62.92 44.87 1.04 0.00 0.80 0.00 0.79 1.11 78 E19_Aa NovelBoundary 0 78.75 0.00 1.83 0.00 27.76 0.00 8.61 4.19 7.81 2.47 19.22 11.40 6.82 26.31 40.92 173.89 86.30 0.00 4.71 3.00 0.00 0.00 3.76 79 ER19a ExonRegion 0 210.08 1.06 1.51 11.47 84.09 24.83 18.39 23.51 34.17 5.76 264.89 46.61 90.21 323.10 184.76 489.67 477.01 0.00 1.66 1.11 1.12 0.89 3.03 80 E19_Da NovelBoundary 0 137.51 0.00 2.90 5.76 19.86 19.93 6.71 8.42 12.88 0.00 31.11 6.00 45.61 65.98 31.15 79.64 106.31 0.00 0.00 0.00 0.00 0.00 4.35 81 E19a_E20a KnownJunction 0 72.01 0.00 1.66 6.66 29.63 11.36 12.06 20.58 18.89 1.40 239.80 50.27 93.66 308.85 133.26 503.37 417.76 0.00 0.00 0.00 0.00 3.12 0.00 82 I19 Intron 0 72.75 0.75 0.51 3.94 25.71 9.32 13.34 8.81 18.20 1.74 51.43 11.48 45.43 69.33 50.95 138.40 135.71 0.25 3.24 0.59 0.41 1.35 0.81 83 I19_AR1 ActiveIntronRegion 1 65.56 0.95 0.43 4.44 28.99 10.20 13.25 8.70 20.10 2.05 54.15 13.07 45.67 73.70 53.53 145.76 144.32 0.22 2.89 0.75 0.52 1.46 1.03 84 I19_SR1 SilentIntronRegion 1 173.79 0.00 0.00 1.51 26.16 3.46 20.01 14.60 21.00 1.15 45.75 12.03 65.14 63.34 82.52 164.79 128.73 1.85 6.72 0.00 0.00 0.00 0.00 85 I19_AR2 ActiveIntronRegion 1 181.76 0.00 0.00 1.70 28.76 3.67 20.36 14.04 19.14 1.15 52.19 8.12 48.66 50.75 68.54 167.93 123.78 1.85 9.56 0.00 0.00 0.00 0.00 86 I19_SR2 SilentIntronRegion 1 88.22 0.00 0.96 2.18 11.23 6.56 12.84 8.48 9.66 0.46 40.71 4.82 43.18 53.18 35.95 103.23 101.48 0.11 4.01 0.00 0.00 1.10 0.00 87 E20_Aa NovelBoundary 1 45.93 0.00 1.74 6.89 34.80 10.51 9.41 4.03 4.08 1.26 32.80 18.61 54.05 68.34 37.21 34.26 124.73 2.45 3.58 2.56 0.00 2.69 0.00 88 ER20a ExonRegion 0 103.68 8.53 5.52 14.10 59.66 18.83 29.99 25.66 31.43 10.14 187.07 46.18 94.01 248.74 160.14 381.79 324.34 8.77 8.37 10.30 3.65 6.80 9.84 89 E20_Da KnownBoundary 0 146.47 0.00 1.18 0.00 132.68 15.45 41.16 8.63 31.77 3.33 96.23 73.22 72.56 101.24 56.25 149.19 155.12 2.28 0.00 0.00 0.00 2.76 4.01 90 ER20b ExonRegion 0 135.18 5.88 4.85 11.82 67.22 15.63 30.40 18.83 27.36 7.66 86.61 38.39 80.50 96.96 57.87 121.11 143.97 7.03 6.62 8.30 4.72 4.28 6.99