Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ERCC4 Gene 0 17.28 28.74 19.32 14.20 34.49 22.50 27.85 18.19 20.77 35.88 24.77 50.63 61.84 38.38 19.79 27.92 28.77 26.55 17.20 33.15 24.80 28.58 25.51 2 439007 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 311895 Transcript 0 13.77 22.41 17.39 9.62 30.88 24.36 23.68 16.13 19.65 38.59 24.64 41.03 51.47 40.72 18.15 31.62 25.97 25.95 10.02 34.28 29.15 29.11 17.89 4 389138 Transcript 0 0.00 0.00 0.00 0.68 1.34 0.00 0.00 0.00 0.00 1.15 1.93 0.00 0.00 0.00 1.45 0.00 1.65 0.92 0.00 0.00 0.00 0.00 0.00 5 462862 Transcript 0 0.80 1.91 0.61 0.11 2.00 3.21 1.82 0.99 1.72 2.95 3.30 4.07 6.41 4.73 1.03 3.04 2.62 3.04 0.27 4.87 4.14 1.74 2.20 6 IG46_AR1 ActiveIntergenicRegion 0 3.15 40.53 0.83 5.36 1.44 3.20 0.00 0.00 6.57 0.00 12.14 0.00 0.00 0.00 0.00 1.12 0.00 22.98 0.00 11.60 0.00 20.76 2.56 7 IG46_AR2 ActiveIntergenicRegion 0 7.36 53.82 3.91 4.38 0.78 2.74 0.00 1.28 8.58 0.00 9.56 0.00 0.00 0.00 0.00 0.55 0.00 17.53 0.00 9.13 0.00 24.17 2.63 8 IG46_SR2 SilentIntergenicRegion 0 9.64 64.42 5.63 3.99 1.23 3.97 0.00 1.41 8.78 0.26 9.98 0.00 0.00 0.00 0.00 0.00 0.00 22.52 0.00 14.77 0.00 22.38 3.29 9 IG46_AR3 ActiveIntergenicRegion 0 11.59 77.17 5.22 4.30 0.14 3.67 0.00 2.64 10.60 0.00 14.24 0.00 0.00 0.00 0.00 0.00 0.00 11.86 0.00 12.54 0.00 33.77 0.46 10 IG46_SR3 SilentIntergenicRegion 0 12.70 79.99 6.13 5.45 0.00 3.36 0.00 1.73 10.70 0.00 16.75 0.00 0.00 0.00 0.00 0.00 0.00 9.55 0.00 13.83 0.00 34.03 0.00 11 IG46_AR4 ActiveIntergenicRegion 0 12.65 71.81 7.71 8.74 2.17 5.93 0.00 1.03 7.58 0.00 8.65 0.00 1.79 0.00 0.00 0.00 0.00 14.13 0.00 14.48 0.00 23.15 2.38 12 IG46_SR4 SilentIntergenicRegion 0 12.05 76.33 6.59 5.37 2.79 3.68 0.00 0.00 7.53 0.96 7.75 0.00 0.00 0.00 0.00 0.00 0.00 19.38 0.00 9.21 0.18 27.07 2.35 13 IG46_AR5 ActiveIntergenicRegion 0 34.80 112.54 9.11 14.24 0.99 4.24 0.00 0.95 8.33 0.32 7.32 0.00 0.36 0.00 0.00 0.00 0.00 12.57 0.00 10.22 0.00 14.24 1.90 14 IG46_AR11 ActiveIntergenicRegion 0 0.63 18.53 1.27 3.02 0.00 0.00 0.00 0.00 0.73 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.83 0.00 15 ER1a ExonRegion 0 6.73 1.82 0.00 0.00 3.63 7.07 5.48 1.11 0.35 2.29 14.63 0.00 2.35 8.24 0.00 12.21 10.14 7.85 4.55 4.48 14.56 3.20 5.03 16 ER1b ExonRegion 0 4.17 9.58 2.40 1.35 4.54 10.95 11.16 3.19 4.05 11.54 20.18 5.11 12.92 18.90 4.80 13.79 13.01 22.77 7.12 18.89 28.09 5.82 15.89 17 E1_Da NovelBoundary 0 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 1.56 3.57 2.37 0.00 0.00 2.47 0.00 4.19 0.00 3.94 4.80 3.26 6.18 0.00 12.55 18 E1a_E2a KnownJunction 0 0.00 6.71 7.10 2.06 0.00 2.16 3.53 11.75 8.39 22.91 32.11 0.00 12.99 37.85 9.64 26.57 8.13 12.10 7.53 36.18 41.08 20.27 35.60 19 I1 Intron 0 1.33 1.05 1.83 1.88 2.08 1.36 3.97 2.01 2.79 4.49 0.79 2.83 3.05 3.33 1.62 3.30 6.11 10.76 4.72 6.31 7.51 3.01 4.57 20 I1_AR1 ActiveIntronRegion 0 1.39 0.93 1.84 1.79 1.27 1.09 3.18 1.38 1.69 4.72 0.80 1.79 1.39 3.81 1.14 2.47 7.06 15.15 5.11 5.51 9.45 1.61 4.75 21 ER2a ExonRegion 1 3.37 10.71 6.99 6.77 16.85 18.63 17.20 10.35 15.58 27.48 36.11 30.50 34.64 43.78 8.45 33.51 26.81 22.72 12.71 35.34 24.28 23.59 34.06 22 E2a_E3a KnownJunction 0 14.60 36.38 1.69 9.42 4.16 57.30 31.13 12.65 22.08 28.23 60.33 43.66 100.48 50.27 9.64 45.54 42.54 20.56 9.60 30.49 21.00 28.23 33.46 23 E3_Aa NovelBoundary 0 7.56 3.35 6.03 2.06 12.99 0.00 14.09 1.97 4.14 3.20 2.37 0.00 0.00 9.42 4.45 4.36 0.00 9.87 9.41 23.78 5.68 18.25 4.35 24 ER3a ExonRegion 1 14.57 38.55 13.69 13.21 16.31 13.91 33.11 16.99 24.58 37.01 54.56 79.30 102.53 55.92 12.74 50.28 69.57 27.81 9.93 50.14 41.42 33.71 31.42 25 E3a_E4a KnownJunction 1 13.56 34.14 12.89 12.45 40.49 14.14 27.65 15.36 25.64 47.52 58.12 68.12 81.81 58.57 8.90 75.62 79.76 37.47 3.67 22.31 38.92 36.74 40.12 26 I3_AR1 ActiveIntronRegion 0 1.54 6.52 2.31 3.53 7.84 2.00 4.93 2.83 3.48 1.04 2.37 0.00 24.84 5.72 9.89 3.31 1.43 3.23 2.97 10.54 0.05 6.30 8.88 27 E4_Aa NovelBoundary 0 7.26 18.48 24.13 4.13 4.33 0.00 7.77 6.90 17.51 6.88 9.84 0.00 33.93 0.00 4.45 6.84 0.00 1.82 0.00 19.94 0.00 5.33 0.00 28 ER4a ExonRegion 0 19.01 36.32 17.09 12.36 29.79 24.55 33.67 20.33 27.20 49.49 41.47 106.49 125.41 51.27 19.50 48.94 54.40 30.90 14.67 50.40 34.19 42.28 42.48 29 E4_Da NovelBoundary 0 0.00 18.42 1.80 2.06 4.33 0.00 7.33 6.00 9.55 7.31 5.37 6.00 0.00 0.00 0.00 0.00 4.11 2.20 0.00 3.26 0.00 0.00 4.35 30 E4a_E5a KnownJunction 1 10.59 41.18 8.22 9.79 32.00 19.25 81.52 21.24 19.62 40.02 22.74 72.92 148.53 49.03 19.16 44.43 53.30 26.70 25.60 26.46 38.98 56.70 45.33 31 E5_Aa NovelBoundary 0 13.26 3.35 5.56 3.63 0.00 5.68 8.52 3.98 1.79 2.93 0.00 7.65 0.00 0.00 0.00 0.00 0.00 4.27 4.33 15.21 0.00 7.16 4.10 32 ER5a ExonRegion 0 10.96 42.42 12.27 10.67 22.77 20.18 30.55 22.73 18.38 26.82 38.64 103.36 106.11 51.48 12.74 28.23 44.50 30.01 17.02 49.17 46.00 29.49 34.14 33 E5a_E6a KnownJunction 0 19.86 75.12 17.18 13.38 14.52 22.88 20.76 28.38 13.37 20.42 32.69 125.89 158.76 32.43 18.54 48.79 29.17 44.36 21.08 34.71 37.81 39.92 65.39 34 ER6a ExonRegion 0 19.18 38.30 12.53 8.80 23.81 17.38 41.52 13.92 11.57 25.40 31.32 77.53 111.14 53.85 18.29 41.50 36.37 34.63 13.27 33.59 28.87 30.35 25.84 35 E6_Da NovelBoundary 0 20.30 54.66 3.70 2.06 11.63 30.21 50.30 6.61 1.48 5.91 17.48 83.58 98.69 50.80 14.96 38.54 8.13 6.92 13.46 17.51 11.86 26.76 25.35 36 E6b_E8a KnownJunction 1 20.60 45.45 14.81 3.33 72.84 66.89 72.56 21.32 15.57 29.79 37.59 114.79 155.83 83.58 13.35 45.54 43.76 17.53 13.18 25.12 26.75 54.31 34.15 37 ER6b ExonRegion 1 20.64 48.40 12.01 2.93 48.70 48.05 53.55 15.64 11.49 20.93 34.79 104.34 131.09 79.42 15.81 42.95 32.84 16.26 16.72 20.21 22.70 43.44 30.69 38 ER7a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 ER8a ExonRegion 0 15.75 34.57 25.21 18.87 41.73 33.37 42.39 25.51 26.76 39.65 31.85 108.43 129.46 56.11 16.91 58.51 52.90 50.19 28.15 31.34 40.78 41.91 51.72 40 E8a_E9a KnownJunction 1 21.19 66.57 33.80 23.37 19.52 27.48 32.72 31.91 28.01 53.16 22.22 112.69 67.53 95.94 19.28 105.27 52.73 65.54 79.53 54.33 39.54 90.75 86.99 41 ER9a ExonRegion 0 12.43 38.13 16.68 16.51 31.55 20.02 42.93 23.44 19.23 45.80 38.38 80.42 67.09 58.48 16.66 44.66 47.58 49.37 28.55 55.45 52.02 37.74 44.84 42 E9a_E10b KnownJunction 0 3.26 12.17 10.64 1.50 16.13 22.49 18.90 11.54 16.78 38.44 29.48 37.06 46.43 50.92 10.88 41.01 30.67 35.32 3.86 38.03 45.34 27.62 15.02 43 E9b_E10c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44 ER9b ExonRegion 0 0.00 0.00 0.00 1.36 2.68 0.00 0.00 0.00 0.00 2.29 3.87 0.00 0.00 0.00 2.90 0.00 3.30 1.85 0.00 0.00 0.00 0.00 0.00 45 I9 Intron 0 6.85 9.64 6.52 4.88 9.56 5.39 15.51 7.39 4.61 5.65 7.03 13.06 6.92 6.22 5.70 5.46 6.50 4.85 5.21 6.68 4.04 9.67 6.08 46 I9_AR1 ActiveIntronRegion 0 6.89 11.96 9.58 5.78 11.62 7.74 21.54 8.97 3.78 5.75 9.97 17.54 10.37 10.35 6.95 6.88 8.79 6.85 7.51 10.69 8.75 12.56 11.30 47 I9_SR1 SilentIntronRegion 0 2.12 12.20 8.58 2.73 12.04 13.88 28.65 14.32 3.18 7.70 7.46 25.36 8.04 1.62 3.11 7.22 6.84 0.00 0.00 6.84 0.00 15.33 0.00 48 I9_AR2 ActiveIntronRegion 0 13.10 12.94 7.26 6.40 13.37 5.60 24.18 9.56 8.12 10.18 6.96 23.09 10.99 7.42 6.03 5.72 11.73 3.61 3.12 7.99 4.59 14.91 4.68 49 ER10a ExonRegion 0 1.41 3.39 2.45 0.45 3.57 9.78 6.18 2.88 5.35 11.09 11.60 12.99 15.63 17.87 2.90 10.90 7.70 9.85 1.06 14.18 14.69 6.95 8.81 50 ER10b ExonRegion 1 4.23 12.20 7.35 1.70 11.37 25.67 18.87 8.64 13.59 34.41 33.34 31.39 34.00 48.32 9.43 38.64 23.11 30.95 9.56 39.36 44.07 20.84 29.37 51 ER10c ExonRegion 0 2.45 12.73 6.07 4.06 8.36 17.71 33.55 11.61 13.81 25.78 24.29 35.03 41.62 44.63 14.44 27.76 28.02 32.80 17.41 25.24 45.90 14.89 27.80 52 E10_Da NovelBoundary 0 11.34 5.92 2.45 7.52 8.40 5.79 14.66 0.00 3.12 5.94 2.21 0.00 0.00 2.47 0.00 8.72 3.65 3.86 27.67 12.46 5.50 0.00 7.34 53 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54 E10a_E12a KnownJunction 0 3.78 12.17 5.94 6.09 11.80 5.34 25.66 12.77 17.42 27.18 20.90 30.91 35.55 52.74 9.27 8.63 27.58 50.86 21.74 35.54 28.48 26.27 37.05 55 ER11a ExonRegion 0 1.77 4.25 0.00 0.00 4.43 3.07 1.11 1.08 1.54 0.71 1.62 3.30 10.00 1.04 1.21 1.24 2.76 2.29 0.00 5.28 1.88 0.00 0.00 56 E11_Da NovelBoundary 0 7.26 2.76 3.67 4.13 0.00 2.27 6.23 7.19 8.83 5.91 0.00 11.85 26.30 2.30 0.00 11.62 4.77 0.00 0.00 18.60 0.00 2.45 7.09 57 E11a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58 E12_Aa NovelBoundary 0 6.59 0.00 4.29 0.00 4.24 18.46 6.62 2.05 1.59 7.49 2.58 0.00 26.30 9.48 0.00 8.20 7.67 1.95 9.04 0.00 10.69 6.12 7.85 59 ER12a ExonRegion 0 1.40 11.82 13.32 6.74 12.57 12.53 26.69 15.49 25.45 24.84 23.71 49.77 70.64 61.83 17.02 28.01 43.88 51.74 26.02 37.96 59.97 24.28 24.95 60 E12a_E13a KnownJunction 1 0.00 17.96 18.04 6.43 20.03 16.35 20.01 8.38 15.16 36.48 12.06 24.01 87.98 72.22 10.14 54.77 26.46 58.57 0.00 35.47 59.00 27.92 29.88 61 ER13a ExonRegion 1 2.87 11.14 13.52 6.13 15.99 18.39 20.53 13.38 26.66 35.25 32.43 49.86 70.48 55.36 11.41 39.62 40.64 64.85 23.99 33.84 51.49 23.04 36.40 62 E13_Da KnownBoundary 0 3.78 9.08 15.14 7.13 7.81 36.68 16.65 10.39 24.51 47.44 11.63 24.61 52.27 75.23 25.09 15.98 29.17 53.27 17.79 15.34 34.78 29.21 28.34 63 ER13b ExonRegion 0 3.48 13.47 17.00 9.28 17.11 15.89 16.06 9.43 17.26 29.86 18.80 27.96 51.35 47.64 10.71 26.69 27.49 41.05 17.81 21.50 35.34 17.33 20.51 64 E13_Db KnownBoundary 1 0.00 28.35 11.86 12.95 41.09 22.37 10.38 2.42 22.16 25.38 26.53 37.36 32.47 45.56 0.00 22.73 26.09 34.41 15.53 31.70 15.38 14.02 16.90 65 ER13c ExonRegion 0 24.27 32.65 24.14 17.74 45.63 26.24 28.46 20.72 22.52 38.73 19.80 44.99 56.52 30.52 25.41 22.22 21.26 16.58 16.17 30.53 12.95 30.60 20.76 66 IG47_AR3 ActiveIntergenicRegion 0 0.30 0.00 1.05 0.29 0.00 0.00 0.06 0.74 0.00 0.00 1.55 0.51 0.00 0.77 0.59 0.00 0.00 0.39 0.00 0.00 9.03 1.06 1.68