Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AMDHD2 Gene 0 8.94 3.07 23.76 9.51 5.31 15.19 9.01 16.66 15.75 17.65 18.55 3.43 4.10 26.45 38.51 28.38 21.60 23.84 14.67 11.72 29.58 11.09 23.21 2 302956 Transcript 0 8.80 2.80 4.03 2.21 4.22 9.89 8.18 3.54 2.37 2.75 6.64 0.12 0.00 7.52 12.82 14.03 13.07 7.18 5.51 2.57 12.20 3.02 12.89 3 293971 Transcript 0 7.19 7.83 45.71 20.81 11.12 26.23 4.15 31.01 28.01 40.48 50.49 6.30 6.82 34.02 71.70 31.53 21.41 43.48 30.49 34.32 52.57 6.06 52.84 4 413459 Transcript 0 3.78 0.00 0.00 1.70 0.00 0.00 2.12 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.81 0.00 0.00 5 429721 Transcript 0 0.33 0.06 10.10 1.19 2.04 1.86 2.16 3.48 4.00 4.07 2.45 0.30 0.40 2.04 8.42 5.73 14.27 8.80 4.35 5.30 9.50 0.26 8.69 6 ER1a ExonRegion 0 21.75 7.54 8.14 5.28 11.61 24.87 21.78 7.03 4.28 5.38 18.27 0.00 0.00 19.99 35.24 39.88 37.16 17.91 13.82 5.42 32.06 7.19 36.19 7 E1_Ab KnownBoundary 0 94.16 22.82 28.59 18.95 40.24 67.12 58.91 23.99 16.03 22.35 50.22 0.00 0.00 59.69 77.01 108.86 102.57 76.19 43.58 21.16 71.48 22.66 83.83 8 ER1b ExonRegion 0 17.02 4.95 8.99 5.49 5.61 24.56 16.96 9.50 5.89 8.76 20.86 1.58 0.00 14.41 25.08 26.23 30.60 20.57 14.96 7.70 33.27 9.04 26.48 9 E1a_E2a KnownJunction 1 3.78 0.00 21.67 13.12 0.00 8.35 3.67 20.21 10.30 21.33 41.69 0.00 0.00 13.95 26.70 6.92 71.72 23.88 4.52 14.64 75.99 10.59 10.50 10 ER2a ExonRegion 0 5.35 0.68 29.78 15.35 1.54 11.61 6.49 18.31 16.19 27.61 39.53 1.96 9.79 41.20 62.32 56.12 46.45 46.36 21.46 18.70 57.80 24.58 64.33 11 E2a_E3a KnownJunction 0 38.75 6.45 65.28 25.44 12.39 45.20 26.06 44.32 24.71 43.68 19.69 13.05 20.94 31.43 43.39 37.60 88.36 63.51 29.46 37.78 73.21 25.41 47.63 12 E3_Aa NovelBoundary 1 3.78 0.00 6.50 2.56 0.00 0.00 8.30 14.87 9.92 9.59 0.00 0.00 0.00 0.00 33.13 4.02 4.77 14.01 13.46 3.26 3.15 0.00 7.68 13 ER3a ExonRegion 0 16.31 11.17 53.37 22.57 12.63 47.99 35.74 50.17 38.38 44.29 56.73 14.19 15.98 58.61 66.40 62.80 59.23 63.21 38.34 35.44 76.58 21.40 51.29 14 E3_Da NovelBoundary 0 10.30 2.76 10.59 9.96 7.72 5.45 3.93 24.52 6.77 20.07 2.16 0.00 0.00 2.18 9.77 4.02 21.60 20.31 3.48 11.63 22.12 0.00 43.54 15 E3a_E4a KnownJunction 0 34.97 6.51 25.61 14.35 4.33 26.35 19.34 35.69 36.72 25.25 48.49 6.15 12.99 71.28 76.40 59.04 80.50 53.64 25.88 18.60 72.34 29.82 37.05 16 I3 Intron 0 12.84 4.77 16.56 6.34 9.26 10.28 10.74 20.95 20.68 17.40 4.46 6.75 10.07 5.53 16.92 18.85 11.29 17.79 18.30 13.37 16.25 7.09 20.20 17 I3_SR1 SilentIntronRegion 0 10.77 4.29 11.27 5.66 6.85 9.13 7.89 15.82 17.16 13.30 4.15 5.67 8.81 4.29 14.59 16.55 9.38 13.80 14.18 10.73 14.51 7.19 17.07 18 I3_AR1 ActiveIntronRegion 0 16.35 15.16 29.74 12.64 24.32 24.01 18.66 33.15 47.61 34.09 2.46 18.11 4.69 5.32 15.30 18.10 33.61 30.74 39.38 14.12 33.46 12.88 26.96 19 I3_AR2 ActiveIntronRegion 0 40.45 17.17 30.50 11.81 27.35 28.93 26.04 33.99 43.92 31.60 3.22 17.32 4.69 8.30 20.31 22.13 37.04 27.51 53.44 13.48 27.18 15.51 33.61 20 I3_SR2 SilentIntronRegion 0 48.68 19.06 29.72 12.44 26.76 26.36 31.28 34.14 37.05 28.10 3.87 25.44 9.97 11.37 18.13 25.63 37.96 26.10 53.35 16.22 24.24 17.71 43.68 21 I3_AR3 ActiveIntronRegion 0 47.81 17.46 28.47 10.98 16.84 22.65 33.49 30.91 41.41 25.84 5.91 29.80 11.86 10.51 9.22 19.93 32.43 21.19 57.15 18.90 21.52 12.50 50.96 22 I3_AR4 ActiveIntronRegion 0 38.80 5.62 24.51 11.36 7.14 17.55 23.14 35.97 33.58 23.87 5.61 23.30 18.09 5.57 14.37 12.31 22.48 21.56 34.58 16.92 10.39 9.52 42.37 23 I3_AR5 ActiveIntronRegion 1 10.58 1.48 22.84 12.27 0.00 9.34 10.47 30.33 33.24 10.43 6.85 11.02 9.38 4.58 22.68 15.67 24.91 21.00 20.56 21.28 14.22 7.77 26.96 24 I3_AR6 ActiveIntronRegion 0 10.58 1.58 23.42 9.69 0.59 4.48 3.09 27.27 33.62 12.74 12.24 8.66 6.77 6.14 19.02 18.82 15.77 18.48 30.44 18.44 17.63 10.42 23.82 25 I3_AR7 ActiveIntronRegion 0 5.82 3.30 23.59 7.67 5.35 3.67 6.29 27.01 38.13 13.76 9.91 12.99 4.69 6.50 24.66 22.66 15.27 14.78 31.85 18.09 15.98 8.85 19.46 26 I3_AR8 ActiveIntronRegion 1 4.68 6.10 22.77 6.53 9.72 3.67 13.17 29.47 37.83 12.74 12.61 15.04 4.69 7.44 31.61 18.93 9.03 17.89 28.33 13.89 14.85 8.22 24.73 27 I3_AR9 ActiveIntronRegion 0 15.88 3.75 19.07 7.42 12.84 8.40 14.78 27.26 31.59 23.16 4.76 5.09 13.36 7.67 18.56 21.87 14.40 25.39 18.22 19.12 16.94 5.57 18.59 28 I3_SR3 SilentIntronRegion 0 14.44 5.22 18.98 6.64 11.44 11.98 12.47 25.65 21.75 21.35 4.48 6.53 11.65 6.49 18.29 21.84 11.87 20.29 20.56 15.06 18.57 7.40 23.00 29 I3_AR10 ActiveIntronRegion 1 1.61 2.32 26.42 3.86 3.06 4.89 6.55 4.90 6.30 6.50 3.68 8.14 4.41 3.27 19.75 10.18 5.03 14.33 14.55 8.91 8.39 2.38 13.41 30 Ix Intron 0 5.51 2.65 27.87 6.96 7.29 7.59 6.89 11.28 13.07 15.17 1.60 1.69 3.20 1.91 9.55 11.61 10.16 11.74 4.15 7.80 9.12 3.94 7.64 31 Ix_AR1 ActiveIntronRegion 0 5.54 2.66 28.00 7.00 7.32 7.63 6.93 11.33 13.13 15.23 1.61 1.70 3.21 1.92 9.60 11.66 10.20 11.80 4.17 7.84 9.16 3.96 7.68 32 E4_Aa NovelBoundary 0 3.04 2.57 12.74 7.79 0.00 0.00 1.77 8.87 13.08 10.99 2.16 0.00 0.00 4.59 0.00 12.39 9.54 19.28 8.38 3.26 5.68 5.57 16.48 33 ER4a ExonRegion 0 20.32 5.66 20.63 13.46 7.49 18.14 10.66 18.23 20.88 24.21 34.86 2.68 11.94 51.41 68.36 39.45 48.91 16.97 9.79 15.24 58.34 23.41 24.67 34 E4_Da NovelBoundary 0 6.82 0.00 17.98 6.56 4.33 2.90 2.25 10.23 14.90 20.66 7.37 6.30 0.00 16.25 15.70 16.32 13.46 31.01 22.78 0.00 5.68 3.12 7.43 35 E4a_E5a KnownJunction 0 6.45 6.58 23.45 17.41 3.82 19.31 3.93 18.65 17.59 21.92 14.64 0.00 12.82 43.91 90.61 47.00 32.45 18.49 7.15 9.01 56.53 19.41 19.38 36 E5_Aa NovelBoundary 0 3.63 0.00 16.03 4.96 0.00 23.68 2.16 9.00 12.67 14.18 0.00 0.00 0.00 11.77 0.00 0.00 12.90 11.77 8.75 9.46 0.00 2.82 4.35 37 ER5a ExonRegion 0 13.95 4.41 67.46 26.57 7.86 29.12 12.76 30.03 42.39 42.53 39.28 7.01 16.56 77.87 93.41 81.45 50.23 66.18 41.11 19.49 66.07 26.13 67.09 38 E5a_E6a NovelJunction 0 0.00 0.00 10.47 0.00 0.00 0.00 0.00 6.94 6.80 18.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 39 E5a_E6b KnownJunction 0 22.82 6.45 83.53 35.56 3.90 29.02 13.82 35.04 54.14 60.76 41.17 5.85 25.49 89.23 121.39 45.89 31.51 102.60 34.45 23.59 75.86 18.92 67.86 40 ER6a ExonRegion 0 0.33 0.06 10.10 1.19 2.04 1.86 2.16 3.48 4.00 4.07 2.45 0.30 0.40 2.04 8.42 5.73 14.27 8.80 4.35 5.30 9.50 0.26 8.69 41 E6_Ab KnownBoundary 0 3.19 0.00 29.63 1.70 0.00 0.00 0.00 10.35 9.14 10.80 7.37 0.00 5.84 0.00 0.00 7.01 12.25 14.38 4.24 11.19 9.02 0.00 27.91 42 ER6b ExonRegion 0 30.71 9.38 106.69 36.80 11.49 43.16 24.34 57.65 61.18 74.93 54.03 15.55 17.05 80.45 125.05 99.16 63.58 93.54 49.19 35.40 91.48 39.35 69.44 43 E6a_E7a KnownJunction 0 49.79 18.29 97.07 33.70 16.55 58.38 38.29 61.94 51.33 58.99 39.59 6.30 20.94 91.88 131.90 78.36 46.47 90.20 46.40 29.98 97.98 48.99 63.77 44 E7_Aa NovelBoundary 0 3.70 0.00 2.96 0.00 0.00 0.00 6.67 3.45 0.00 3.28 2.11 0.00 0.00 0.00 0.00 3.50 4.11 0.00 3.86 6.39 5.62 0.00 17.16 45 ER7a ExonRegion 0 20.30 5.72 67.01 20.27 14.41 41.53 25.81 44.81 38.98 39.79 44.40 11.38 11.29 74.02 108.23 78.44 47.83 56.46 36.77 35.27 78.45 24.92 60.05 46 E7a_E8a KnownJunction 0 31.56 0.00 62.59 13.82 22.58 34.24 31.00 64.73 46.79 38.12 41.22 12.00 6.66 53.62 112.37 79.55 42.73 60.48 48.19 36.56 73.45 26.45 43.96 47 E8_Aa NovelBoundary 0 3.41 0.00 13.51 8.69 0.00 0.00 6.09 7.23 0.00 4.41 0.00 0.00 0.00 4.59 10.63 0.00 4.77 2.36 4.80 2.68 5.50 3.12 3.84 48 ER8a ExonRegion 0 19.40 9.40 66.71 24.82 12.12 27.29 20.06 52.54 39.86 50.51 47.71 7.22 7.82 61.28 103.24 59.19 46.85 32.30 25.01 31.90 65.99 22.82 42.83 49 E8_Da KnownBoundary 0 14.67 0.00 48.52 20.01 11.71 23.62 8.35 52.08 21.38 31.97 8.48 12.60 0.00 38.67 38.69 20.51 34.41 20.19 4.24 24.03 17.42 6.06 15.37 50 E8a_E8b KnownJunction 0 7.19 7.83 45.71 20.81 11.12 26.23 4.15 31.01 28.01 40.48 50.49 6.30 6.82 34.02 71.70 31.53 21.41 43.48 30.49 34.32 52.57 6.06 52.84 51 E8a_E9a NovelJunction 0 0.00 0.00 1.24 0.00 0.00 0.00 0.00 2.55 1.71 1.61 2.47 0.00 0.00 4.71 16.44 12.48 0.00 4.35 0.00 5.82 8.83 2.45 0.00 52 ER8b ExonRegion 0 9.12 2.10 42.62 14.92 8.29 13.18 11.28 31.34 23.83 25.70 12.09 3.90 0.10 34.45 52.61 46.05 22.89 29.93 9.14 17.37 31.82 20.84 18.75 53 E8_Ab KnownBoundary 0 13.78 6.31 40.24 14.18 23.51 18.91 14.53 35.04 33.77 29.63 31.74 11.70 0.00 50.74 60.45 52.55 12.25 45.60 21.08 27.74 28.54 9.19 20.74 54 ER8c ExonRegion 0 16.00 5.68 49.43 15.17 15.74 27.94 13.98 35.18 33.95 41.68 53.41 9.04 3.45 59.64 112.98 61.50 50.00 56.11 41.69 32.92 60.96 24.36 46.81 55 E8_Db NovelBoundary 0 3.78 0.00 50.89 15.82 12.05 10.16 16.30 22.55 23.67 31.03 17.32 0.00 0.00 17.84 17.80 29.22 13.09 17.87 11.77 17.90 19.71 0.00 11.10 56 E8b_E9a KnownJunction 0 7.56 9.41 45.44 18.41 4.16 32.94 25.04 26.12 17.10 27.53 36.69 5.70 6.82 57.98 117.81 23.93 24.87 51.65 42.54 14.89 68.70 19.41 63.77 57 Ix Intron 0 9.81 3.39 38.27 7.53 5.95 7.82 8.84 18.63 20.14 21.28 10.75 1.98 2.15 18.98 24.50 18.20 14.69 20.95 13.00 8.29 20.02 9.66 11.44 58 Ix_AR1 ActiveIntronRegion 0 9.88 3.42 38.54 7.59 6.00 7.88 8.90 18.77 20.29 21.43 10.83 2.00 2.16 19.11 24.66 18.33 14.78 21.10 13.09 8.35 20.16 9.73 11.52 59 E9_Aa NovelBoundary 0 16.15 6.45 53.66 14.88 26.83 20.73 18.33 30.97 32.09 36.67 13.69 0.00 0.00 21.13 42.65 29.22 38.34 29.18 21.27 23.59 36.20 11.27 32.44 60 ER9a ExonRegion 0 24.75 7.74 48.15 22.39 17.08 46.92 24.01 42.97 39.46 35.76 47.66 7.60 7.77 73.82 109.91 61.89 48.83 44.00 40.69 17.42 85.30 25.68 43.99 61 E9_Da NovelBoundary 0 7.56 8.49 39.68 15.88 24.96 55.48 15.72 17.29 27.86 10.34 11.79 0.00 0.00 26.25 6.30 18.97 17.39 33.87 19.01 14.83 21.56 5.20 16.22 62 E9a_E10a KnownJunction 0 25.71 0.00 18.72 25.50 23.60 48.32 16.25 31.63 45.28 30.54 63.86 0.00 13.15 48.62 61.44 73.91 46.19 52.02 34.82 27.48 57.58 24.80 72.99 63 Ix Intron 0 8.83 4.38 48.16 15.03 12.24 21.96 12.11 20.10 16.35 23.69 15.61 2.88 1.56 20.48 17.59 26.80 14.66 31.89 28.72 16.32 19.57 12.62 14.62 64 Ix_AR1 ActiveIntronRegion 0 8.88 4.40 48.42 15.11 12.31 22.08 12.18 20.21 16.43 23.81 15.69 2.89 1.57 20.59 17.68 26.93 14.74 32.06 28.87 16.41 19.68 12.68 14.70 65 E10_Aa NovelBoundary 0 7.11 14.60 55.65 17.41 11.38 42.42 12.54 25.18 23.87 25.36 14.48 6.30 0.00 23.43 36.34 41.36 12.44 39.71 29.74 15.08 23.60 8.76 35.85 66 ER10a ExonRegion 0 29.47 3.99 32.75 22.02 19.57 24.67 16.46 32.16 32.94 36.84 50.82 3.06 9.75 60.95 99.44 70.05 43.69 55.50 33.79 29.58 52.80 26.35 68.58 67 E10_Da KnownBoundary 0 29.26 8.29 51.15 26.50 20.20 23.74 16.47 48.55 40.16 56.76 31.48 11.85 17.86 60.80 95.93 80.75 34.32 65.79 43.77 21.41 59.12 28.90 61.89 68 E10a_E10b KnownJunction 0 3.78 0.00 0.00 1.70 0.00 0.00 2.12 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.81 0.00 0.00 69 ER10b ExonRegion 0 15.47 7.93 38.37 17.58 12.88 30.44 12.63 31.74 32.49 34.04 25.64 6.40 2.01 41.41 64.79 34.49 28.36 47.20 25.05 24.79 43.59 21.08 30.24 70 E10_Db KnownBoundary 0 13.56 5.99 20.37 8.16 4.24 13.57 2.25 18.65 14.12 11.66 20.58 0.00 0.00 2.47 8.78 7.69 17.67 16.04 8.38 20.71 33.98 5.63 11.10 71 ER10c ExonRegion 0 4.66 0.86 3.52 1.34 1.04 4.80 2.76 2.99 2.81 2.87 1.65 0.35 0.00 2.46 3.23 2.21 2.04 3.63 1.97 2.28 3.70 1.88 2.03 72 E10_Ab KnownBoundary 0 17.11 11.77 6.39 16.12 11.63 7.44 1.94 6.28 4.11 1.42 7.16 0.00 0.00 0.00 5.19 11.36 0.00 14.92 0.00 0.00 0.00 2.27 15.71 73 ER10d ExonRegion 0 0.30 0.00 0.00 0.26 0.00 0.19 0.21 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.07 0.00 0.30 74 E10_Dc KnownBoundary 0 9.56 6.25 6.68 8.62 4.16 12.83 0.00 2.30 4.63 6.98 2.37 0.00 0.00 0.00 0.00 3.16 0.00 8.21 3.95 2.68 0.00 0.00 0.00 75 ER10e ExonRegion 0 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.73 0.00 0.84 0.00 0.45 76 IG50_SR1 SilentIntergenicRegion 0 9.89 0.00 5.73 0.80 2.15 8.84 6.68 7.20 6.84 7.95 2.15 0.57 0.00 0.00 4.38 9.40 5.41 3.85 3.60 1.78 8.74 0.61 6.64