Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CCNF Gene 0 28.30 43.67 81.83 25.27 39.57 40.90 78.27 71.95 36.85 115.98 217.31 66.68 32.93 305.94 149.10 220.56 209.23 195.78 77.87 104.62 12.19 13.61 12.19 2 293968 Transcript 0 0.71 0.51 4.05 0.42 0.00 0.00 0.00 2.37 0.19 4.96 3.46 0.00 0.00 2.63 1.47 6.98 6.23 7.34 1.22 9.53 0.17 0.94 0.00 3 397066 Transcript 0 4.00 17.47 36.29 10.46 11.16 23.42 27.16 27.26 25.44 68.33 142.17 42.68 12.25 227.00 74.55 143.76 117.98 112.66 44.68 97.23 7.74 6.01 10.61 4 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.59 0.00 0.00 0.87 0.78 5.14 0.00 0.36 0.00 0.98 0.51 0.00 0.00 5 ER1b ExonRegion 0 7.65 7.25 7.73 1.07 8.58 12.98 18.23 2.66 3.33 9.75 24.93 0.00 0.00 34.90 27.67 41.69 24.93 2.13 18.21 20.98 1.27 5.10 2.03 6 E1a_E2a KnownJunction 0 10.82 21.44 32.61 8.02 32.00 20.44 54.32 19.67 10.47 35.78 58.70 5.85 0.00 49.03 66.01 48.11 51.61 26.16 20.80 39.63 0.00 8.08 0.00 7 ER2a ExonRegion 0 6.12 11.17 28.36 5.13 8.68 7.03 20.31 23.15 18.34 49.24 103.45 27.96 12.74 101.64 40.52 58.98 84.27 56.73 39.60 52.31 6.71 6.24 3.43 8 E2a_E3a KnownJunction 1 3.48 17.56 41.34 11.15 3.65 8.29 11.17 20.70 26.59 54.34 134.56 24.16 6.82 259.40 84.80 175.85 68.16 115.45 58.73 113.84 8.96 11.57 22.88 9 E2a_E4a KnownJunction 0 0.00 0.00 11.24 1.27 0.00 0.00 0.00 7.11 0.00 13.73 7.84 0.00 0.00 4.59 0.00 15.81 12.90 17.49 3.67 27.61 0.00 2.82 0.00 10 ER3a ExonRegion 0 5.04 13.15 38.24 9.03 10.05 15.75 22.75 31.29 23.42 69.19 124.95 42.20 10.30 190.37 89.64 146.75 103.25 133.11 40.49 89.96 8.01 6.45 8.95 11 E3a_E4a KnownJunction 1 3.48 21.71 29.30 11.19 19.78 46.22 47.56 29.78 26.30 81.47 166.99 61.67 19.64 231.21 49.20 108.69 182.51 89.41 34.82 87.89 6.24 0.00 0.00 12 ER4a ExonRegion 1 4.08 41.33 47.68 11.44 31.36 31.07 55.84 38.23 25.17 83.17 254.52 62.78 11.04 280.88 73.38 102.45 219.22 136.98 62.21 111.11 11.47 9.62 2.25 13 E4_Da NovelBoundary 1 10.37 13.09 9.99 6.76 3.48 2.44 11.48 13.35 7.29 4.86 2.42 6.30 26.30 2.47 19.78 23.50 12.44 10.03 9.22 12.46 0.00 0.00 0.00 14 E4a_E5a KnownJunction 1 8.67 22.23 53.75 12.02 22.67 45.54 49.64 44.48 32.23 89.32 190.05 78.63 6.82 322.27 105.32 110.57 194.67 148.98 72.57 94.09 11.12 7.72 8.71 15 ER5a ExonRegion 1 11.54 23.60 48.53 19.74 24.30 24.82 48.63 39.11 28.94 90.46 202.35 34.75 6.70 283.94 101.02 159.68 230.94 165.45 68.35 107.96 9.43 9.23 7.75 16 E5a_E6a KnownJunction 0 11.04 31.18 44.82 27.34 28.78 19.31 52.38 45.22 27.66 101.86 232.85 56.72 30.52 276.42 79.61 197.73 289.29 183.39 57.23 104.12 0.00 5.88 12.04 17 ER6a ExonRegion 0 10.90 26.51 34.67 14.46 30.52 42.11 63.55 43.21 26.65 95.64 260.51 45.22 16.15 317.40 91.39 207.72 265.29 169.79 72.02 90.35 10.57 8.87 12.07 18 E6a_E7a KnownJunction 0 16.08 38.81 35.24 8.09 31.58 39.41 53.00 44.65 24.80 83.94 203.74 42.91 39.93 305.38 79.98 212.42 222.44 172.16 62.12 99.14 11.31 14.45 12.12 19 E6a_E9a NovelJunction 0 0.00 0.00 1.63 1.37 0.00 0.00 8.30 0.00 4.11 0.00 7.21 0.00 0.00 7.42 0.00 16.49 0.00 14.59 0.00 0.00 0.00 0.00 0.00 20 E7_Aa NovelBoundary 0 31.78 0.00 11.83 6.93 15.37 2.67 26.41 15.44 6.13 11.95 5.37 6.30 0.00 2.47 15.20 7.18 4.30 41.54 4.71 17.96 0.00 2.82 8.71 21 ER7a ExonRegion 0 8.06 53.88 51.40 25.79 35.27 26.55 54.45 70.85 35.76 112.90 234.65 42.63 29.75 324.00 108.87 235.05 283.37 221.89 70.05 127.38 11.80 13.24 10.63 22 E7_Da NovelBoundary 0 0.00 2.83 6.53 3.56 12.05 11.41 16.08 3.94 0.00 5.53 0.00 6.30 6.82 2.53 9.64 12.13 4.77 31.88 0.00 5.94 0.00 3.12 12.46 23 E7a_E8a KnownJunction 0 3.19 43.02 68.42 20.14 44.40 37.36 72.96 67.69 37.99 106.00 296.55 52.52 51.62 319.50 108.29 261.64 337.17 225.42 61.27 138.25 5.56 12.25 7.77 24 ER8a ExonRegion 0 17.20 32.25 75.99 20.79 33.21 26.19 63.24 69.54 38.48 122.84 308.05 65.05 31.27 387.04 126.35 258.96 272.11 248.43 92.70 120.46 13.87 11.99 12.27 25 E8a_E9a KnownJunction 0 33.78 61.17 84.21 37.62 47.37 27.43 101.93 112.26 69.50 169.71 277.86 129.34 33.76 358.29 109.15 326.58 316.41 283.50 103.25 121.95 32.00 5.57 26.04 26 ER9a ExonRegion 0 11.75 38.06 98.26 31.09 49.31 45.98 99.66 93.92 57.25 148.78 308.26 81.23 42.95 421.14 138.10 272.56 320.86 233.75 86.44 146.49 22.05 12.62 12.00 27 E9a_E10a KnownJunction 1 35.49 72.62 102.36 34.76 75.89 65.76 103.87 118.99 65.48 140.62 264.86 135.34 52.11 522.40 118.05 282.40 315.57 250.17 98.45 127.64 24.53 13.78 18.87 28 ER10a ExonRegion 0 18.93 49.22 91.36 23.20 25.56 30.94 72.06 68.81 37.60 108.86 223.54 80.53 26.46 347.05 138.19 221.63 270.49 174.79 78.32 98.98 17.12 13.84 16.37 29 E10a_E11a KnownJunction 0 17.04 36.51 96.95 24.34 40.58 38.39 87.84 67.07 38.22 114.86 316.29 132.49 61.52 449.41 184.19 422.88 313.23 316.04 158.03 138.70 27.92 14.14 4.27 30 I10_AR1 ActiveIntronRegion 0 7.23 9.13 15.67 5.07 11.19 7.20 16.55 11.21 12.27 18.76 14.19 10.66 8.99 19.60 20.26 21.37 24.58 33.82 9.26 22.38 1.26 1.41 3.38 31 I10_SR2 SilentIntronRegion 0 8.28 4.72 10.86 1.61 4.55 9.77 12.15 15.33 15.12 17.14 13.91 8.30 5.13 23.18 21.70 25.43 15.71 25.82 9.57 20.98 1.50 1.30 2.66 32 E11_Aa NovelBoundary 0 0.00 3.29 6.80 0.00 0.00 7.89 10.47 9.12 17.74 13.14 4.95 0.00 13.64 9.83 20.03 8.37 9.35 14.96 9.60 5.82 0.00 0.00 0.00 33 ER11a ExonRegion 0 17.17 37.49 113.51 25.65 33.73 46.60 93.08 81.52 43.51 133.57 314.16 120.53 42.97 410.73 154.09 330.55 324.95 301.93 90.45 151.42 25.72 17.29 12.20 34 E11a_E12a KnownJunction 0 16.37 54.46 107.42 23.07 47.03 32.48 115.31 55.57 34.17 163.45 305.71 117.64 33.44 420.27 118.18 252.67 192.05 295.85 71.72 93.45 14.95 22.35 4.35 35 ER12a ExonRegion 0 12.94 42.83 97.08 21.23 29.57 36.48 80.01 77.57 35.63 125.05 278.76 79.56 31.95 338.94 157.71 267.80 249.57 294.24 82.77 121.36 11.69 19.36 8.27 36 E12a_E13a KnownJunction 0 7.19 41.37 111.14 29.77 19.27 23.57 54.28 70.69 35.76 113.89 199.26 74.57 92.85 348.29 121.89 337.43 213.28 331.59 76.71 84.37 5.13 20.57 4.35 37 ER13a ExonRegion 0 14.02 27.89 91.89 27.97 41.60 41.36 72.74 99.19 44.59 144.21 284.97 88.61 47.70 494.08 168.64 360.54 267.86 340.53 130.31 140.09 12.60 19.84 11.91 38 E13a_E14a KnownJunction 0 32.45 49.60 96.89 16.65 63.07 50.26 124.32 105.31 43.34 174.82 406.63 85.53 98.37 445.23 219.42 338.03 396.26 264.31 171.77 206.13 21.56 12.49 4.35 39 I13_SR1 SilentIntronRegion 0 9.66 4.91 12.19 4.65 5.58 4.77 12.89 16.04 8.54 12.86 7.21 11.12 7.10 7.52 13.45 15.78 9.79 37.02 9.94 16.33 2.01 0.00 0.56 40 E14_Aa NovelBoundary 0 28.67 17.10 52.04 29.53 37.95 23.28 32.46 45.39 25.87 72.69 5.26 0.00 6.82 7.12 13.60 7.35 13.65 54.64 17.60 9.20 7.23 5.76 12.46 41 ER14a ExonRegion 0 17.14 40.67 76.06 22.90 32.30 24.46 53.50 80.08 41.41 148.18 190.33 76.85 42.68 295.48 125.54 177.14 199.01 122.60 70.94 109.98 15.45 13.11 13.07 42 E14_Da NovelBoundary 0 13.34 5.92 49.53 17.95 19.10 5.68 4.20 19.47 9.06 48.70 7.26 0.00 0.00 2.30 34.86 28.28 21.88 56.54 0.00 17.71 3.15 0.00 0.00 43 E14a_E15a KnownJunction 0 21.19 29.73 89.23 39.79 52.12 34.81 57.23 99.97 54.60 174.36 189.42 54.92 31.65 305.02 81.59 213.36 214.49 203.95 60.43 117.29 16.62 13.90 8.02 44 E15_Aa NovelBoundary 0 5.93 8.81 40.03 19.88 0.00 0.00 10.33 12.36 21.30 47.52 5.16 17.11 0.00 14.07 14.09 0.00 34.69 27.48 8.56 9.33 2.90 0.00 0.00 45 ER15a ExonRegion 0 22.17 40.07 94.91 30.03 28.85 55.87 71.10 95.00 50.88 163.58 221.14 75.80 53.28 380.96 164.31 232.68 261.83 199.50 85.31 135.89 15.89 11.83 16.08 46 E15_Da NovelBoundary 0 13.85 5.33 49.94 14.88 3.48 9.88 3.93 6.65 22.48 44.70 14.74 0.00 6.82 10.01 30.41 3.76 9.54 41.33 4.42 5.82 2.84 2.63 0.00 47 E15a_E16a KnownJunction 0 15.63 26.25 80.78 23.84 37.69 85.58 68.28 92.70 26.48 124.80 161.25 55.07 38.80 302.96 121.27 175.34 171.01 187.62 105.41 119.14 7.85 8.70 19.63 48 I15 Intron 0 3.22 3.98 18.59 7.58 6.20 5.71 4.99 15.30 8.34 36.53 7.21 3.78 1.43 10.32 15.10 9.37 7.77 24.65 6.23 14.02 2.72 0.75 1.06 49 I15_SR1 SilentIntronRegion 0 4.89 2.86 24.21 8.40 4.10 8.84 5.37 20.14 9.60 38.78 9.61 4.06 3.19 12.53 16.48 11.34 9.23 25.59 4.54 16.45 4.43 1.26 1.47 50 I15_AR1 ActiveIntronRegion 0 2.39 3.72 15.73 7.92 6.46 3.67 5.25 13.70 8.82 37.04 6.98 4.57 0.34 10.16 14.35 10.61 8.66 26.58 7.15 13.14 2.69 0.73 0.51 51 I15_SR2 SilentIntronRegion 0 2.08 6.32 14.92 5.64 9.19 4.50 3.90 10.53 5.42 32.12 3.79 1.87 0.63 7.11 14.37 3.89 3.78 19.67 7.29 11.82 0.00 0.00 1.44 52 ER16a ExonRegion 0 15.15 31.45 75.21 19.87 29.23 34.94 57.46 74.87 40.10 138.37 200.67 62.32 44.09 320.68 155.35 219.15 212.89 210.31 56.47 97.56 8.97 12.02 13.84 53 E16_Da NovelBoundary 0 2.89 9.14 8.66 5.76 8.57 7.21 1.85 9.86 14.18 61.30 2.63 0.00 0.00 7.30 14.09 4.27 17.48 17.37 4.71 8.56 0.00 0.00 3.67 54 E16a_E17a KnownJunction 0 21.26 53.08 82.05 19.98 34.21 43.16 74.77 91.80 37.24 158.32 304.97 78.48 47.07 370.30 200.14 292.40 206.54 307.63 99.96 100.29 9.95 16.53 19.55 55 I16 Intron 0 1.89 3.48 17.90 6.13 6.05 3.77 3.27 15.54 10.47 51.67 3.84 3.47 1.44 8.96 8.43 9.78 8.60 14.92 11.35 11.08 2.27 0.71 1.01 56 I16_SR1 SilentIntronRegion 0 1.91 3.96 16.66 6.52 5.67 2.35 2.56 16.23 10.70 53.28 3.42 3.46 0.87 7.99 9.18 8.76 9.59 13.70 11.71 9.61 2.40 0.84 1.49 57 I16_AR1 ActiveIntronRegion 0 6.08 2.03 30.63 6.81 8.03 5.50 5.79 21.39 11.12 58.64 12.08 5.41 0.00 12.79 11.61 20.43 5.78 32.80 15.93 15.69 0.55 2.08 0.00 58 I16_AR2 ActiveIntronRegion 0 0.00 2.03 27.63 6.44 8.03 6.67 4.93 22.47 10.33 61.83 7.56 5.51 0.00 10.34 6.59 16.21 9.90 30.74 6.08 8.32 2.20 2.08 0.00 59 I16_AR3 ActiveIntronRegion 0 0.00 0.20 23.65 6.13 10.17 4.58 3.97 21.78 8.65 59.75 6.19 6.93 0.00 11.37 2.32 10.11 9.90 27.72 0.32 4.04 2.20 2.08 0.00 60 I16_AR4 ActiveIntronRegion 0 1.70 2.71 18.87 4.93 6.54 7.09 4.80 12.46 9.91 45.90 3.75 2.52 3.31 11.05 6.65 11.06 6.19 14.26 11.06 14.76 2.07 0.16 0.00 61 E17_Aa NovelBoundary 0 9.56 9.54 23.62 11.22 10.87 19.99 10.38 15.81 9.11 62.99 5.05 5.25 0.00 7.42 15.20 19.48 4.68 26.74 3.58 29.08 5.37 0.00 0.00 62 ER17a ExonRegion 0 41.65 53.33 92.46 29.97 49.76 49.30 94.17 79.88 38.39 121.14 216.99 70.66 36.72 306.19 174.90 233.48 196.46 200.96 84.26 102.29 11.71 14.96 13.82 63 ER17b ExonRegion 0 2.12 1.53 0.92 0.00 0.00 0.00 0.00 0.00 0.00 1.15 1.93 0.00 0.00 2.44 3.63 0.00 5.78 4.16 0.00 0.00 0.00 0.00 0.00