Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CARHSP1 Gene 0 96.77 130.86 122.94 75.45 120.99 191.23 132.92 143.95 135.53 191.89 146.62 41.49 29.77 116.05 107.18 104.58 92.24 268.80 114.54 166.57 127.80 103.17 76.08 2 311052 Transcript 1 224.58 146.66 73.91 27.63 410.55 876.77 637.69 87.56 67.81 137.45 513.45 6.71 4.10 228.02 341.71 421.12 249.40 601.33 374.73 200.14 250.83 213.22 302.99 3 396593 Transcript 0 15.01 7.43 5.69 2.37 9.37 11.63 9.05 8.31 3.19 5.53 11.30 4.58 1.60 13.79 10.14 12.03 14.73 19.33 12.60 9.10 29.31 7.78 8.09 4 ER1a ExonRegion 1 88.43 71.52 37.18 12.40 171.44 402.05 284.46 42.37 33.89 75.75 276.45 2.32 1.37 113.53 233.94 191.30 140.97 331.47 171.47 90.66 135.93 111.39 148.77 5 E1a_E3a KnownJunction 1 360.73 221.80 110.64 42.85 649.66 1351.49 990.92 132.75 101.74 199.15 750.45 11.10 6.82 342.52 449.47 650.94 357.83 871.18 577.99 309.61 365.72 315.05 457.20 6 ER2a ExonRegion 0 11.51 8.19 12.08 4.37 11.51 18.44 14.34 11.93 5.62 10.43 25.03 6.54 1.67 20.53 12.94 23.52 27.17 36.00 25.21 17.20 36.36 11.00 14.03 7 E2_Da NovelBoundary 0 0.00 6.05 19.84 14.68 11.63 2.27 5.92 20.58 15.08 17.65 21.37 45.31 0.00 0.00 22.99 23.67 8.88 34.66 23.72 22.95 11.74 2.82 4.35 8 E2a_E3a KnownJunction 0 22.23 2.57 4.17 0.00 3.23 7.89 7.51 2.05 3.53 3.87 6.95 0.00 0.00 18.13 13.60 7.60 12.62 16.46 9.41 9.40 50.84 10.96 8.28 9 I2_SR3 SilentIntronRegion 0 20.04 11.80 15.34 9.61 15.94 9.52 15.16 15.34 7.30 17.22 10.03 6.65 4.25 6.91 11.36 10.90 10.58 20.75 9.24 23.07 7.74 2.23 5.38 10 I2_SR4 SilentIntronRegion 0 26.10 13.56 15.16 13.44 16.48 16.59 8.41 7.90 8.08 9.85 3.67 2.51 0.00 9.14 20.87 16.89 10.35 12.85 6.15 8.90 7.66 0.64 8.51 11 I2_AR5 ActiveIntronRegion 0 30.50 25.35 39.88 25.69 26.06 12.58 15.64 31.70 14.24 36.79 8.07 7.46 12.32 16.31 25.08 24.49 18.36 20.55 13.28 18.01 10.78 5.92 8.99 12 I2_SR5 SilentIntronRegion 0 21.93 15.60 18.69 10.95 11.86 9.25 8.80 13.61 6.84 20.49 6.97 4.67 1.41 9.98 16.52 20.52 14.32 11.43 8.44 14.21 9.97 1.22 6.69 13 I2_AR6 ActiveIntronRegion 0 37.99 23.81 46.55 28.20 30.59 11.58 16.88 31.13 22.74 45.75 12.44 12.97 12.39 25.38 46.47 34.07 19.95 31.99 17.51 21.57 9.08 8.13 18.79 14 E3_Aa NovelBoundary 1 21.11 26.90 37.46 17.98 24.02 17.89 18.42 40.21 20.51 26.14 0.00 30.01 0.00 18.66 18.30 40.16 20.85 19.98 22.21 15.40 10.81 2.51 34.40 15 ER3a ExonRegion 1 70.10 53.26 106.05 35.70 101.65 214.13 135.28 102.05 81.57 162.55 361.60 21.15 11.97 179.15 164.09 172.98 183.13 373.78 160.06 159.55 218.78 100.31 106.86 16 E3_Da NovelBoundary 0 7.56 12.63 31.87 26.80 15.28 6.70 10.64 15.61 11.95 20.66 9.27 0.00 6.66 23.78 39.19 39.90 13.65 40.38 13.84 14.00 0.00 10.90 15.37 17 E3a_E4a KnownJunction 1 30.08 53.02 211.23 68.12 33.70 45.37 40.85 200.65 158.71 247.51 439.16 6.30 6.33 501.39 392.86 193.03 185.04 505.07 292.62 386.70 247.29 210.28 140.93 18 I3 Intron 0 28.64 24.44 48.90 31.60 20.60 11.45 19.06 26.13 18.29 48.03 19.41 15.25 24.58 39.71 50.33 44.43 23.42 41.21 23.51 21.78 14.60 11.66 19.19 19 I3_AR1 ActiveIntronRegion 0 30.14 27.23 58.46 38.18 26.18 13.39 22.91 31.10 22.18 58.24 23.55 18.22 28.36 43.63 57.83 48.47 25.71 47.30 25.20 26.47 15.83 13.48 21.83 20 I3_SR1 SilentIntronRegion 0 25.67 15.46 16.09 8.91 1.13 6.02 4.91 8.55 4.53 13.60 4.76 5.38 8.96 29.82 25.81 37.38 16.59 20.33 22.18 6.57 9.92 7.03 11.26 21 I3_SR2 SilentIntronRegion 0 18.38 13.36 14.53 8.22 1.07 1.78 7.07 9.38 5.15 9.77 5.19 3.71 16.21 18.70 21.14 15.71 12.26 19.43 8.01 3.22 10.96 2.08 7.13 22 E4_Aa NovelBoundary 0 27.26 27.96 39.80 24.74 16.13 34.47 7.82 24.32 22.51 49.10 13.58 12.15 6.82 38.02 45.37 56.82 27.21 55.01 9.60 14.38 11.37 11.39 18.10 23 ER4a ExonRegion 0 45.05 58.15 178.02 83.75 123.72 168.28 107.62 164.50 149.51 242.34 304.97 40.76 35.04 350.37 382.52 384.54 169.53 818.48 283.65 256.36 206.93 206.57 247.54 24 E4_Da NovelBoundary 0 35.04 28.09 28.80 11.42 19.27 8.12 24.29 14.33 24.19 44.83 12.32 25.06 19.64 39.91 48.58 24.01 35.81 40.67 0.00 27.61 14.76 11.51 3.93 25 E4a_E5a KnownJunction 0 32.30 69.46 253.33 100.75 345.25 507.15 268.02 137.31 177.26 235.74 335.51 48.92 33.28 350.76 261.45 187.98 140.16 482.77 144.10 283.86 210.97 144.27 91.68 26 I4 Intron 1 25.04 21.26 36.70 20.48 18.04 15.05 19.84 32.40 17.87 45.34 12.55 14.19 13.69 16.93 33.85 33.86 19.89 47.41 20.98 27.23 11.21 6.70 15.12 27 I4_AR1 ActiveIntronRegion 1 30.18 20.74 26.11 15.98 11.70 16.98 9.99 26.42 10.89 41.32 13.47 10.63 18.11 12.56 49.69 24.06 18.56 40.95 13.73 30.18 11.66 4.42 12.04 28 I4_SR1 SilentIntronRegion 1 49.64 32.65 34.96 21.31 18.36 8.93 13.99 28.95 16.62 48.97 17.72 19.16 21.02 17.91 47.41 34.26 25.18 38.00 29.76 36.13 7.63 9.36 18.76 29 I4_AR2 ActiveIntronRegion 1 28.41 19.07 45.64 24.92 24.75 15.01 23.85 40.93 24.82 53.24 13.29 12.05 12.25 16.43 35.68 38.93 21.28 55.61 22.43 29.24 12.41 8.53 19.01 30 I4_SR2 SilentIntronRegion 0 17.73 22.31 36.18 19.21 16.93 15.19 19.76 32.45 16.56 41.85 10.65 17.78 13.24 19.18 27.55 33.96 19.75 50.33 20.73 23.87 11.06 6.38 14.15 31 I4_AR3 ActiveIntronRegion 0 22.03 17.99 26.21 16.90 9.99 16.48 22.07 17.75 11.30 38.33 13.21 8.79 10.98 14.52 27.92 29.46 15.21 28.19 20.01 25.60 10.25 3.67 9.14 32 E5_Aa NovelBoundary 0 23.12 13.35 52.25 31.13 23.01 14.76 16.16 58.16 23.32 78.89 11.58 37.06 13.31 22.13 19.66 39.56 18.42 105.71 11.95 42.19 9.08 2.76 19.97 33 ER5a ExonRegion 0 114.17 159.34 139.33 89.48 137.68 213.04 149.18 167.27 159.71 220.45 139.52 48.83 35.41 113.92 100.93 96.03 90.87 266.90 115.06 186.07 130.99 111.67 73.13 34 ER5b ExonRegion 0 11.29 11.52 0.82 2.73 13.38 8.56 5.30 10.95 0.41 2.29 1.93 7.22 3.13 2.71 3.87 4.95 4.40 5.54 3.19 0.71 0.73 1.39 1.96 35 IG50 Intergenic 0 32.14 21.72 27.34 24.53 32.64 28.03 35.84 49.21 32.09 66.60 12.76 28.00 33.06 30.95 45.44 38.99 30.75 50.70 26.90 40.95 11.50 12.07 19.10 36 IG50_SR3 SilentIntergenicRegion 0 34.92 26.45 27.25 21.41 35.37 25.36 40.20 43.73 24.44 52.30 12.32 29.70 37.48 23.63 41.22 34.18 25.30 43.82 24.64 34.96 9.20 9.56 17.89 37 IG50_AR3 ActiveIntergenicRegion 0 32.72 19.84 32.10 26.61 34.21 27.94 36.12 58.46 45.35 94.67 15.01 15.12 24.95 37.71 53.40 47.81 44.45 77.17 30.15 49.16 13.52 14.82 22.26 38 IG50_SR2 SilentIntergenicRegion 0 41.90 18.95 28.55 26.69 35.55 38.73 38.25 55.63 42.90 75.06 10.36 31.46 27.13 33.79 46.08 38.56 33.48 46.23 27.21 50.28 14.28 15.19 19.51 39 IG50_AR2 ActiveIntergenicRegion 0 22.05 17.52 12.37 18.59 31.18 29.93 32.84 29.22 22.91 40.03 15.63 26.14 43.45 29.06 55.93 39.27 32.72 35.83 29.11 32.87 9.79 12.65 13.02 40 IG50_SR1 SilentIntergenicRegion 0 16.36 12.98 13.86 9.70 19.87 21.51 20.87 34.76 20.51 33.52 8.02 7.63 7.80 9.36 10.15 16.15 10.60 52.56 10.10 35.34 8.14 3.49 11.94 41 IG50_AR1 ActiveIntergenicRegion 0 26.72 23.40 35.52 38.33 29.50 24.05 32.87 61.29 33.02 90.49 16.09 46.53 49.86 50.99 62.87 55.00 36.70 49.54 37.53 41.30 13.98 15.94 24.94