Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF205 Gene 0 11.95 26.69 108.45 34.54 16.66 36.63 18.26 46.45 40.38 70.19 4.14 0.16 0.70 4.59 2.26 1.86 1.69 65.77 51.76 37.90 40.47 21.16 25.69 2 382192 Transcript 0 1.78 1.56 5.59 2.42 1.18 3.65 2.22 1.51 2.60 3.68 0.00 0.00 0.00 0.46 1.85 0.00 0.00 1.43 5.00 2.14 4.69 0.00 3.09 3 219091 Transcript 0 0.00 6.12 5.53 0.00 3.48 0.00 2.08 10.43 0.00 9.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.32 4.42 2.88 0.00 0.00 0.00 4 444510 Transcript 0 2.72 1.64 8.67 5.53 0.71 2.56 1.18 15.05 5.79 7.69 0.72 0.89 0.00 0.50 0.00 1.03 1.04 7.58 21.57 6.57 7.75 3.09 3.24 5 414351 Transcript 0 0.00 0.00 4.32 0.00 4.33 0.00 0.00 0.00 2.66 4.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.76 2.88 0.00 0.00 0.00 6 IG25_SR4 SilentIntergenicRegion 0 6.78 1.99 9.14 14.77 18.51 1.43 2.90 14.40 8.92 10.89 0.30 0.45 1.36 0.47 1.11 2.79 0.65 7.44 3.98 2.66 2.76 1.22 1.03 7 ER1a ExonRegion 0 0.00 0.15 0.00 1.17 0.00 1.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 2.28 0.00 0.00 0.00 8 ER1b ExonRegion 0 9.90 31.83 24.35 8.10 20.03 56.11 22.63 17.21 9.71 32.36 1.81 0.00 0.00 0.00 0.59 0.00 3.09 5.24 51.29 23.85 21.07 11.70 24.36 9 E1a_E3a KnownJunction 0 0.00 3.09 8.99 1.83 0.00 4.88 1.68 4.03 5.06 4.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.67 0.00 5.07 0.00 3.84 10 E1a_E3b KnownJunction 0 0.00 6.12 5.53 0.00 3.48 0.00 2.08 10.43 0.00 9.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.32 4.42 2.88 0.00 0.00 0.00 11 E2_Aa NovelBoundary 0 2.74 0.00 16.62 9.42 16.55 0.00 1.85 16.68 13.02 31.16 2.68 6.30 0.00 4.77 0.00 4.36 0.00 4.93 9.13 6.07 9.02 0.00 0.00 12 ER2a ExonRegion 0 5.45 3.29 16.07 8.40 1.42 2.56 2.36 23.16 11.57 15.38 1.45 1.78 0.00 1.00 0.00 2.05 2.09 11.52 24.78 13.14 15.49 6.19 6.48 13 E2_Ab KnownBoundary 0 12.08 12.10 39.95 24.34 3.99 6.87 8.79 51.88 35.76 41.02 0.00 6.30 0.00 0.00 0.00 0.00 3.93 23.13 57.04 29.21 8.40 13.29 11.69 14 ER2b ExonRegion 0 0.40 10.60 26.78 13.19 11.34 12.56 11.22 26.73 16.57 32.14 1.27 0.39 1.27 1.95 0.00 3.01 1.26 20.69 17.53 15.32 14.22 8.19 8.75 15 E2_Da NovelBoundary 0 41.12 8.62 32.29 28.63 37.27 28.45 30.56 49.74 45.34 55.60 2.47 0.00 0.00 2.24 9.39 4.27 0.00 49.62 66.35 17.96 23.29 5.27 12.04 16 E2a_E3a KnownJunction 0 0.00 0.00 1.27 2.66 0.00 2.56 0.00 6.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.65 18.35 0.00 0.00 0.00 0.00 17 E2a_E3b KnownJunction 0 0.00 0.00 4.32 0.00 4.33 0.00 0.00 0.00 2.66 4.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.76 2.88 0.00 0.00 0.00 18 I2 Intron 0 11.93 10.42 35.10 16.14 21.94 11.28 16.12 36.64 16.98 41.17 1.24 1.93 3.96 2.09 2.25 5.33 1.69 26.13 21.63 17.45 20.89 11.75 13.55 19 I2_AR1 ActiveIntronRegion 0 11.99 10.48 35.28 16.22 22.05 11.34 16.19 36.82 17.07 41.38 1.24 1.94 3.98 2.10 2.26 5.36 1.70 26.26 21.73 17.53 20.99 11.81 13.62 20 E3_Aa NovelBoundary 0 20.15 22.69 26.26 21.58 30.22 0.00 9.01 50.03 27.72 42.47 2.00 5.70 0.00 4.71 0.00 10.85 3.46 34.74 26.73 12.14 10.87 5.76 12.29 21 ER3a ExonRegion 0 24.69 10.79 31.26 15.25 13.53 11.32 16.60 29.73 14.71 28.56 1.88 2.64 0.00 3.18 0.50 8.44 0.00 23.32 22.62 14.12 24.91 7.88 7.96 22 E3_Ab KnownBoundary 0 40.38 14.67 66.14 23.07 55.26 19.65 29.72 54.42 33.94 66.54 4.47 0.00 0.00 6.95 5.19 3.25 0.00 50.49 22.68 35.15 43.80 11.82 18.87 23 ER3b ExonRegion 0 33.86 24.49 82.70 23.21 23.97 38.12 27.03 51.04 44.18 63.83 1.27 0.00 0.00 2.92 4.10 4.67 2.40 42.55 66.26 51.06 50.62 18.22 22.99 24 E3_Da NovelBoundary 0 15.11 2.50 14.07 9.62 3.31 0.00 5.83 36.31 7.41 10.72 5.11 0.00 0.00 2.47 0.00 7.60 0.00 16.21 12.52 9.08 2.78 0.00 0.00 25 E3a_E4a KnownJunction 0 10.59 25.32 88.61 29.00 20.20 49.06 42.75 49.66 45.20 75.11 2.21 0.00 0.00 0.00 6.06 0.00 0.00 45.72 56.47 49.09 52.70 18.61 25.27 26 I3 Intron 0 6.25 2.91 11.68 14.72 11.13 2.87 3.49 13.37 9.22 18.88 0.61 0.64 0.73 1.60 2.05 3.32 0.89 13.60 8.98 9.71 5.82 1.12 2.89 27 I3_SR1 SilentIntronRegion 0 7.32 2.59 9.42 13.93 10.07 3.01 3.22 13.29 7.93 17.95 0.47 0.65 0.47 1.52 1.64 2.71 1.00 14.05 8.70 8.27 5.49 1.26 3.57 28 I3_AR2 ActiveIntronRegion 0 3.26 3.83 18.11 17.03 14.20 2.51 4.31 13.67 12.91 21.64 0.99 0.61 1.46 1.83 3.24 5.09 0.56 12.43 9.81 13.84 6.79 0.71 1.01 29 E4_Aa NovelBoundary 0 13.71 3.35 19.22 32.30 7.64 2.38 5.70 19.14 19.15 29.17 0.00 6.30 0.00 0.00 0.00 7.86 0.00 20.23 8.66 11.70 3.15 0.00 3.67 30 ER4a ExonRegion 0 16.87 35.21 124.67 47.41 27.71 56.79 29.87 53.76 60.67 96.39 3.45 0.00 2.04 5.57 6.14 2.83 4.38 55.88 73.16 53.30 49.01 28.84 29.05 31 E4_Da NovelBoundary 0 3.78 0.00 21.08 8.86 10.87 2.90 4.28 18.52 21.04 21.44 1.95 0.00 0.00 2.35 4.70 4.36 0.00 5.02 4.61 22.75 2.78 2.33 0.00 32 E4a_E5a KnownJunction 0 36.08 82.62 153.75 42.29 34.72 69.28 35.95 32.20 49.02 102.48 7.05 0.00 0.00 12.89 0.00 0.00 4.77 79.30 55.15 41.10 43.55 35.45 31.07 33 I4 Intron 0 4.57 2.39 9.67 13.54 4.20 2.16 0.78 10.10 20.58 14.42 1.52 0.00 0.00 1.01 3.55 5.25 1.94 16.75 5.00 12.52 5.62 1.23 1.73 34 I4_SR1 SilentIntronRegion 0 4.86 2.73 10.34 14.79 4.79 2.46 0.89 11.31 22.31 15.85 1.48 0.00 0.00 1.15 4.05 5.96 2.22 18.96 5.70 13.50 5.98 1.26 1.71 35 E5_Aa NovelBoundary 0 6.74 0.00 3.08 15.15 11.04 0.00 6.18 11.87 24.02 17.86 2.21 0.00 0.00 2.12 4.45 8.37 0.00 34.24 3.58 14.64 3.15 3.06 3.67 36 ER5a ExonRegion 0 15.48 48.85 132.83 36.04 24.86 50.15 26.11 33.17 55.31 84.25 5.15 0.00 0.00 5.91 2.80 3.65 5.21 74.38 44.90 46.06 47.21 34.06 22.15 37 E5_Da NovelBoundary 0 16.08 25.59 91.45 27.97 3.31 30.72 7.51 21.69 44.59 48.35 0.00 0.00 0.00 2.24 0.00 0.00 3.83 40.62 10.73 32.02 30.15 9.49 9.39 38 E5_Db NovelBoundary 0 0.00 0.00 6.36 8.99 7.56 10.45 0.00 3.66 2.72 2.12 0.00 0.00 0.00 0.00 12.61 0.00 0.00 20.10 3.76 8.31 3.15 0.00 0.00 39 E5b_E6a KnownJunction 0 24.45 70.58 161.53 44.95 12.31 73.99 17.53 53.52 55.44 90.44 2.21 0.00 0.00 0.00 0.00 0.00 4.77 76.69 78.68 54.90 50.60 30.13 27.15 40 ER5b ExonRegion 0 16.93 58.30 152.35 41.19 11.89 65.00 16.18 53.77 61.89 85.13 2.36 0.00 0.00 2.89 1.29 0.00 8.44 84.59 65.48 47.04 43.83 30.10 24.15 41 I5 Intron 0 5.76 1.84 19.69 22.72 6.74 4.25 4.14 12.72 20.96 23.43 1.36 0.31 0.78 2.77 2.03 3.89 3.99 29.25 13.16 12.87 6.00 1.68 3.85 42 I5_SR1 SilentIntronRegion 0 3.33 0.87 9.50 14.02 3.84 4.50 0.58 6.39 11.16 18.51 0.94 0.00 0.00 1.31 3.00 3.65 5.66 22.51 10.28 10.51 3.09 0.00 1.75 43 I5_AR1 ActiveIntronRegion 0 6.56 2.16 23.00 25.59 7.69 4.21 5.27 14.79 24.17 25.13 1.51 0.41 1.03 3.25 1.75 4.00 3.51 31.56 14.16 13.70 6.94 2.21 4.53 44 E6_Aa NovelBoundary 0 9.93 3.35 14.81 27.97 11.21 5.22 4.11 28.92 33.39 33.87 0.00 0.00 0.00 4.94 4.45 4.36 4.77 21.64 8.75 24.99 8.83 8.51 7.60 45 ER6a ExonRegion 0 12.65 44.35 151.89 54.22 25.59 50.44 33.12 49.20 59.04 95.78 6.53 0.00 1.63 7.17 2.28 1.25 3.06 91.01 72.08 57.82 50.39 27.45 39.85 46 E6_Da NovelBoundary 0 0.00 12.96 10.73 11.75 4.07 2.16 7.95 19.26 23.90 24.52 0.00 0.00 0.00 4.41 0.00 0.00 0.00 27.19 21.74 0.00 11.31 3.12 8.71 47 E6a_E7a KnownJunction 0 18.08 38.55 172.82 41.75 8.40 75.81 25.00 46.50 55.76 90.47 4.74 0.00 0.00 4.94 0.00 0.00 3.93 73.37 69.18 33.88 46.21 23.64 38.75 48 I6_AR1 ActiveIntronRegion 0 5.46 11.60 9.32 13.51 6.19 6.36 5.46 14.33 11.64 12.01 0.00 0.38 0.00 0.14 0.22 0.64 0.00 14.45 12.73 8.34 3.78 3.16 1.89 49 I6_SR2 SilentIntronRegion 0 8.93 9.21 9.97 16.72 6.00 4.97 4.45 14.12 11.40 13.87 0.00 0.00 0.00 0.00 0.56 0.00 0.00 15.85 13.13 6.23 9.48 2.76 2.26 50 I6_AR2 ActiveIntronRegion 0 4.61 9.54 10.09 10.69 4.16 5.06 7.87 19.57 13.36 12.09 0.52 0.00 0.00 0.00 0.31 0.80 0.89 18.39 6.02 8.41 5.33 3.16 2.18 51 E7_Aa NovelBoundary 0 13.19 20.85 16.14 9.66 3.74 23.23 3.84 28.01 11.11 16.52 4.58 0.00 0.00 0.00 0.00 7.60 0.00 32.38 3.76 6.52 12.11 3.12 3.84 52 ER7a ExonRegion 0 12.45 40.49 138.71 28.22 19.53 38.59 20.68 48.52 52.10 96.77 5.61 0.00 0.00 7.80 0.65 0.00 3.36 77.49 51.68 52.02 47.53 26.58 28.04 53 E7a_E8a KnownJunction 0 10.89 37.49 138.64 32.83 28.44 40.77 24.11 35.49 57.38 116.02 7.16 0.00 0.00 0.00 0.00 0.00 0.00 114.25 45.74 38.09 32.56 33.74 20.06 54 ER8a ExonRegion 0 17.46 45.08 165.82 39.24 18.50 51.21 22.90 51.62 51.25 88.25 7.37 0.00 0.00 6.29 1.59 0.92 2.07 97.56 52.96 46.20 61.67 34.53 29.15 55 E8_Da KnownBoundary 0 23.12 43.94 219.66 50.61 43.63 54.63 26.63 56.64 61.78 100.79 10.06 0.00 0.00 4.59 5.32 4.36 0.00 137.29 101.46 45.64 61.28 34.47 61.21 56 ER8b ExonRegion 0 9.50 20.56 120.46 40.46 13.66 32.64 13.81 55.10 40.78 73.14 4.43 0.00 0.78 4.76 2.40 1.46 0.35 80.00 55.21 36.93 40.85 19.96 29.06 57 E8_Db KnownBoundary 0 24.15 8.35 19.75 9.39 8.66 26.35 14.18 10.39 16.38 20.66 0.00 0.00 0.00 2.41 4.45 0.00 0.00 31.38 22.40 15.15 18.47 0.00 15.71 58 ER8c ExonRegion 0 5.35 1.44 7.78 4.25 3.54 4.75 4.98 0.51 2.72 6.27 0.00 0.00 0.00 1.39 2.65 0.00 0.00 4.29 11.34 4.13 9.01 0.00 5.44 59 IG26_SR3 SilentIntergenicRegion 0 6.42 8.25 8.31 10.94 10.53 2.82 7.24 8.01 9.20 11.38 1.57 3.97 4.45 2.64 3.82 5.76 3.11 14.09 11.45 11.65 3.68 1.07 4.65