Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AXIN1 Gene 0 21.10 17.51 49.73 15.97 12.28 23.86 13.99 23.83 25.98 38.25 51.23 12.02 18.55 55.38 64.19 39.52 37.71 49.62 28.42 23.06 36.24 39.61 32.46 2 481769 Transcript 0 0.00 0.00 1.51 2.71 0.00 0.00 0.00 0.00 0.00 1.46 0.00 0.00 0.00 1.12 2.23 2.09 0.00 2.01 2.40 0.00 2.90 2.63 1.79 3 262320 Transcript 0 39.12 24.40 26.08 12.97 24.87 21.07 7.18 7.80 13.76 20.29 44.70 3.00 10.96 44.23 23.49 16.11 10.85 26.80 19.29 19.56 10.32 14.94 4.10 4 354866 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 421566 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 461023 Transcript 0 8.03 3.91 10.33 5.04 4.08 7.21 3.65 7.11 9.44 8.04 4.73 1.16 1.80 7.40 6.58 6.12 3.85 15.86 5.58 7.44 9.47 7.86 7.66 7 457798 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER1b ExonRegion 0 0.00 0.15 0.03 0.00 0.00 0.00 0.00 0.00 0.11 0.13 1.11 0.00 0.00 0.00 0.50 1.05 2.20 0.16 1.08 0.17 2.62 0.00 0.00 10 E1_Ac KnownBoundary 0 0.00 2.43 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.00 2.11 0.00 0.00 0.00 0.00 8.20 11.78 5.18 0.00 2.43 5.13 0.00 0.00 11 ER1c ExonRegion 0 2.17 4.50 14.66 4.58 1.40 6.53 1.36 2.90 3.83 10.12 16.96 0.00 1.47 28.56 24.77 17.72 17.74 9.86 10.51 8.09 7.82 10.21 8.59 12 E1a_E2a KnownJunction 0 6.74 15.72 39.92 8.69 7.13 26.18 3.89 15.32 10.21 16.95 31.85 0.00 6.82 52.80 36.10 24.95 32.16 22.92 0.00 24.10 11.68 23.64 24.16 13 E1a_E3a KnownJunction 0 0.00 0.00 3.02 5.43 0.00 0.00 0.00 0.00 0.00 2.93 0.00 0.00 0.00 2.24 4.45 4.19 0.00 4.02 4.80 0.00 5.81 5.27 3.59 14 ER2a ExonRegion 0 24.01 40.69 76.10 23.35 21.77 39.19 29.09 41.18 47.88 73.40 109.23 38.25 41.30 122.94 110.98 84.65 98.52 99.97 57.21 42.31 68.03 83.03 66.83 15 E2_Ab KnownBoundary 1 91.13 78.54 134.35 36.06 74.36 109.88 44.78 54.67 74.77 109.62 214.48 47.57 27.27 188.30 171.83 148.08 133.61 141.44 140.62 53.75 81.11 155.66 79.39 16 ER2b ExonRegion 0 46.04 57.46 109.46 32.44 61.41 94.32 74.97 52.34 60.52 100.93 167.61 68.38 84.80 144.39 136.14 112.16 118.32 127.28 86.55 60.20 80.63 128.50 91.20 17 E2_Ac KnownBoundary 0 51.34 53.48 130.57 30.47 23.77 71.55 44.65 55.70 52.17 110.75 155.41 66.77 81.49 185.89 129.18 126.98 77.51 164.65 95.63 56.44 80.99 168.58 100.39 18 ER2c ExonRegion 0 29.30 55.64 87.23 30.50 36.98 44.92 40.63 47.65 50.49 92.22 146.41 41.70 70.51 145.08 144.08 111.59 103.94 128.47 75.79 66.06 68.77 111.13 81.96 19 E2a_E3a KnownJunction 0 54.08 43.41 77.35 45.38 26.49 51.39 21.24 33.15 43.29 78.92 139.51 11.55 34.74 159.81 102.23 119.37 97.15 119.59 88.00 58.36 53.44 102.20 141.96 20 ER3a ExonRegion 0 42.24 37.48 87.93 34.34 30.08 66.54 35.70 49.10 50.36 88.08 125.49 15.01 61.00 131.37 160.72 107.57 95.52 115.37 70.80 69.07 72.75 104.29 81.79 21 E3_Da NovelBoundary 0 12.22 0.00 11.00 3.66 0.00 0.00 11.00 0.00 7.26 1.67 7.42 0.00 13.64 6.95 14.22 3.33 4.58 14.59 4.61 14.70 5.81 8.94 7.26 22 E3a_E4a KnownJunction 0 23.63 28.15 104.22 36.59 23.60 38.73 22.30 52.04 46.32 67.72 112.45 18.01 35.22 160.81 162.93 115.44 56.57 122.16 86.40 33.68 65.48 61.66 59.24 23 I3 Intron 0 4.56 1.90 4.04 3.33 3.47 2.31 4.54 2.65 3.97 3.10 4.31 3.48 3.87 3.08 7.64 6.35 6.36 10.54 5.95 5.64 9.37 4.73 10.69 24 I3_SR1 SilentIntronRegion 0 4.57 1.90 4.05 3.34 3.48 2.31 4.55 2.66 3.97 3.10 4.32 3.49 3.87 3.09 7.66 6.36 6.37 10.57 5.96 5.65 9.38 4.74 10.72 25 E4_Aa NovelBoundary 0 6.82 0.00 2.96 3.13 3.74 2.44 2.08 2.55 1.42 7.28 10.00 0.00 0.00 4.41 8.90 0.00 4.11 10.28 0.00 5.88 8.46 0.00 19.63 26 ER4a ExonRegion 0 31.75 19.48 92.77 32.11 18.76 40.02 31.20 47.51 47.30 68.98 95.45 11.20 22.63 128.99 131.18 98.33 63.19 117.65 63.74 42.64 64.66 81.34 68.63 27 E4_Da NovelBoundary 0 21.41 0.00 6.59 0.00 0.00 2.73 0.00 2.46 4.17 7.33 7.21 0.00 0.00 11.60 5.81 0.00 0.00 5.93 0.00 8.95 22.86 11.08 12.55 28 E4a_E5a KnownJunction 0 44.60 37.89 95.89 26.34 20.54 31.91 19.96 56.15 55.82 75.16 89.86 0.00 25.49 105.77 136.35 101.85 74.15 128.01 78.59 51.84 89.70 85.67 55.66 29 I4 Intron 0 8.01 4.66 7.93 6.04 5.03 4.80 5.58 4.43 5.58 6.13 7.21 3.93 4.86 7.50 8.68 9.05 6.48 14.21 5.71 7.42 12.73 8.18 12.91 30 I4_SR1 SilentIntronRegion 0 7.67 3.74 7.97 5.96 5.28 5.12 4.90 3.39 6.16 4.79 6.44 3.31 2.65 6.60 7.73 7.98 6.08 13.45 4.14 7.44 11.67 7.20 11.30 31 I4_AR1 ActiveIntronRegion 0 11.26 7.67 10.07 8.64 6.05 8.93 8.63 5.57 6.83 9.77 8.06 3.24 5.81 10.03 10.51 13.22 10.50 16.03 8.36 9.00 15.83 9.90 14.33 32 I4_AR2 ActiveIntronRegion 0 7.13 4.44 14.87 14.24 8.73 6.18 10.00 9.82 8.87 14.31 1.98 5.13 2.22 6.97 14.74 2.97 6.95 34.62 13.33 7.39 10.21 9.32 18.47 33 I4_AR3 ActiveIntronRegion 1 5.08 2.03 16.67 13.63 5.35 2.20 6.09 14.52 10.50 14.22 5.22 4.33 6.57 5.36 10.73 0.00 12.54 22.91 15.93 5.11 15.65 11.04 16.15 34 I4_SR2 SilentIntronRegion 0 10.25 6.76 8.62 8.26 6.83 2.97 6.55 7.25 6.65 10.75 12.43 6.81 8.59 8.24 9.70 9.77 8.09 18.43 8.21 6.53 15.39 7.18 13.87 35 I4_AR4 ActiveIntronRegion 0 5.17 4.27 7.05 3.31 4.17 2.18 5.80 4.91 5.00 4.12 7.78 3.24 4.11 8.77 9.90 9.11 5.50 15.15 4.95 7.39 15.87 9.44 18.12 36 I4_SR3 SilentIntronRegion 0 6.66 3.20 5.02 3.59 2.37 2.70 3.12 3.54 1.81 4.20 5.13 5.24 9.13 6.01 7.38 7.89 2.92 9.20 5.95 6.27 8.22 8.80 10.68 37 E5_Aa NovelBoundary 0 17.48 12.50 15.91 7.36 15.11 4.60 6.27 0.00 2.49 4.92 13.32 0.00 6.01 7.59 11.00 19.31 7.85 18.16 8.09 5.56 13.71 0.00 6.91 38 ER5a ExonRegion 0 16.53 22.61 104.16 32.21 11.28 32.69 12.64 28.85 45.74 62.94 89.52 8.78 30.15 114.21 141.22 72.60 69.96 42.59 49.14 42.04 77.45 68.14 52.90 39 E5_Da NovelBoundary 0 0.00 0.00 8.19 1.93 4.24 5.68 1.63 4.44 1.79 6.04 2.68 7.65 6.82 4.41 6.06 20.34 4.02 13.89 3.58 3.00 11.00 0.00 7.85 40 E5a_E6a KnownJunction 0 27.19 25.00 109.07 34.73 7.98 47.13 17.67 15.81 27.17 58.77 61.12 0.00 20.13 119.73 141.29 69.90 74.05 84.32 63.72 25.25 50.90 124.73 73.41 41 I5_AR1 ActiveIntronRegion 0 4.51 4.19 5.00 2.19 5.89 3.81 7.15 4.59 7.63 7.72 4.77 2.43 3.65 8.02 7.12 8.85 6.31 15.75 2.60 3.83 9.85 4.15 11.04 42 I5_SR2 SilentIntronRegion 0 4.85 4.55 6.89 3.18 2.49 3.93 3.77 2.87 5.80 3.84 3.64 2.62 1.29 6.94 8.94 8.79 3.58 15.37 2.06 3.72 6.51 2.73 9.72 43 I5_AR3 ActiveIntronRegion 0 5.89 4.95 7.88 5.68 7.82 6.44 5.01 6.23 11.55 4.49 4.75 3.31 7.91 8.42 11.71 12.85 9.37 9.82 3.30 4.17 7.39 5.92 9.70 44 I5_AR5 ActiveIntronRegion 0 12.62 11.48 4.44 5.69 12.33 4.35 8.06 10.34 7.03 5.23 5.93 9.18 8.66 7.99 5.72 8.42 4.80 11.11 5.04 7.05 6.09 5.22 12.04 45 E6_Aa NovelBoundary 0 10.00 0.00 10.94 7.26 10.10 7.61 5.43 5.63 3.12 8.86 4.74 0.00 0.00 2.47 15.20 4.19 12.53 17.70 4.52 6.14 7.85 0.00 7.77 46 ER6a ExonRegion 0 34.28 21.08 123.33 25.15 12.19 34.64 18.53 32.22 42.46 72.44 93.07 18.49 28.06 100.89 136.89 72.41 66.42 91.27 50.27 41.61 63.53 50.42 50.99 47 E6_Da KnownBoundary 0 61.86 31.70 116.94 42.42 24.45 58.89 20.54 44.52 32.81 64.36 86.86 6.30 19.97 100.95 139.81 75.96 56.85 112.21 30.78 40.91 44.97 46.78 36.28 48 ER6b ExonRegion 0 23.77 17.79 125.22 24.59 16.38 48.90 27.54 42.08 45.62 71.04 90.59 21.26 23.33 123.81 179.50 79.42 81.06 76.97 41.80 47.49 73.30 64.67 46.26 49 E6b_E7a KnownJunction 0 23.71 23.81 140.68 36.59 17.06 51.05 14.00 76.85 74.25 72.90 85.07 48.62 12.66 237.45 274.06 113.47 107.34 90.29 104.66 44.93 65.30 124.06 82.20 50 ER7a ExonRegion 0 38.52 36.46 156.70 44.01 18.86 64.01 21.01 76.05 69.24 105.98 182.96 42.41 85.90 160.99 204.50 138.96 124.62 141.35 104.43 54.77 112.48 120.34 120.21 51 E7a_E8a KnownJunction 0 77.79 65.19 174.36 59.73 19.52 102.67 30.78 88.02 89.47 148.98 220.63 46.97 111.19 166.23 392.73 101.17 165.78 104.88 89.60 51.39 165.32 165.27 78.28 52 ER8a ExonRegion 0 48.44 35.04 97.03 35.65 21.42 65.07 27.33 53.29 48.72 81.50 151.37 40.27 90.49 135.26 165.20 104.27 106.51 129.14 81.43 45.87 91.48 96.17 87.59 53 E8_Ab KnownBoundary 0 50.38 46.77 60.20 36.06 45.59 66.33 30.78 35.78 29.11 46.71 74.97 23.86 61.36 96.12 89.62 75.79 110.61 86.31 70.78 46.79 73.70 42.19 62.14 54 ER8b ExonRegion 0 38.71 46.43 67.27 30.75 40.81 51.58 33.07 34.82 31.88 49.48 106.15 18.85 49.34 135.55 121.01 74.98 70.90 76.91 63.38 35.55 51.10 46.05 54.63 55 E8_Da KnownBoundary 0 0.00 0.00 3.13 2.06 4.07 2.56 0.00 6.49 5.87 3.01 3.90 0.00 0.00 4.41 0.00 7.78 4.77 5.43 0.00 3.26 5.81 0.00 8.37 56 E8a_E8c KnownJunction 0 30.75 22.50 19.19 13.05 38.37 26.35 10.16 9.24 11.34 19.05 51.07 6.00 21.91 35.73 14.71 32.21 17.20 31.13 34.45 21.41 6.18 10.16 0.00 57 E8a_E8d KnownJunction 0 30.60 28.68 71.76 19.31 16.04 21.12 29.81 27.89 24.68 39.11 64.75 25.81 33.28 106.13 145.74 62.55 32.16 51.94 43.39 14.00 26.75 35.21 44.13 58 ER8c ExonRegion 0 5.03 4.20 9.18 4.78 4.15 8.29 3.47 8.11 9.53 8.72 4.37 1.61 2.46 7.14 6.12 6.80 4.71 17.19 6.72 6.73 7.81 8.13 7.24 59 E8_Ac KnownBoundary 0 3.48 3.09 15.88 8.06 3.74 23.62 8.57 9.73 14.70 9.05 4.16 0.00 0.00 4.94 0.00 8.46 17.77 27.23 21.93 5.82 8.46 3.00 3.59 60 ER8d ExonRegion 0 30.05 13.15 28.99 14.61 11.10 18.49 5.91 12.84 19.50 24.42 32.97 5.10 7.85 38.22 33.22 17.30 13.27 28.03 14.20 15.95 27.76 17.88 15.51 61 E8_Db KnownBoundary 0 13.85 2.50 20.31 3.56 3.99 7.95 2.25 11.05 11.98 3.28 6.95 0.00 0.00 2.35 0.00 3.85 13.09 16.33 0.00 15.34 13.84 8.63 12.38 62 E8b_E8d KnownJunction 0 47.49 26.31 32.97 12.89 11.38 15.79 4.20 6.37 16.17 21.54 38.33 0.00 0.00 52.74 32.26 0.00 4.49 22.47 4.14 17.71 14.46 19.72 8.19 63 ER8e ExonRegion 0 11.04 3.61 11.48 5.29 4.02 6.13 3.83 6.10 9.35 7.36 5.09 0.71 1.14 7.66 7.04 5.44 2.98 14.53 4.44 8.15 11.13 7.59 8.07 64 E8_Ad KnownBoundary 0 20.37 3.35 18.33 6.46 0.00 15.84 7.07 4.03 16.03 6.74 0.00 0.00 0.00 12.18 19.41 7.78 0.00 14.01 0.00 12.27 9.08 5.45 20.49 65 ER8f ExonRegion 0 76.97 40.79 123.00 43.02 22.93 49.17 30.24 45.14 52.30 77.66 103.79 14.23 22.94 123.32 139.42 60.39 61.45 100.40 59.17 38.99 89.53 73.17 55.74 66 E8c_E9a KnownJunction 0 3.41 0.00 0.00 0.00 0.00 0.00 0.00 2.55 0.00 1.13 0.00 0.00 0.00 2.35 0.00 3.25 0.00 0.00 0.00 0.00 2.47 0.00 0.00 67 E8c_E9b KnownJunction 0 152.10 47.95 172.47 65.29 65.70 58.38 39.22 76.93 75.75 116.58 96.39 25.06 28.08 135.79 194.45 76.39 107.90 75.32 56.38 82.07 79.63 99.75 74.52 68 ER9a ExonRegion 0 4.09 2.21 5.86 2.10 3.13 3.76 1.91 6.91 4.38 5.23 1.90 0.59 0.32 7.27 10.13 8.61 1.40 2.54 1.13 1.59 2.05 4.56 2.29 69 E9_Ab KnownBoundary 0 3.26 2.70 5.71 1.76 0.00 8.52 4.50 6.33 6.34 5.00 0.00 0.00 0.00 9.54 9.64 7.09 0.00 2.57 0.00 3.00 0.00 3.12 4.35 70 ER9b ExonRegion 0 106.42 60.88 166.19 54.90 51.68 68.02 40.13 77.78 67.89 107.09 89.15 49.25 37.96 149.22 217.23 78.67 76.54 78.64 63.21 56.98 89.46 90.70 80.67 71 E9_Da KnownBoundary 0 112.39 84.39 128.35 31.30 46.01 81.94 42.53 61.32 50.87 68.44 82.86 55.07 48.70 147.39 200.51 78.78 57.88 114.83 53.84 30.04 84.39 79.17 60.95 72 E9_Db KnownBoundary 0 82.53 43.54 139.35 66.39 23.43 95.97 30.60 55.33 61.57 78.38 103.39 12.75 19.15 112.72 221.28 71.61 29.08 103.01 56.28 77.08 65.67 112.24 105.34 73 ER9c ExonRegion 0 86.86 59.21 169.24 56.45 32.93 85.98 35.39 78.25 69.31 95.85 100.44 28.97 35.36 134.99 188.80 67.33 51.42 86.13 56.23 61.78 87.98 100.89 96.46 74 ER9d ExonRegion 0 47.01 32.47 94.82 29.77 22.23 35.92 22.11 48.98 43.16 72.76 89.64 12.04 15.87 86.75 127.81 59.30 55.49 66.05 38.70 31.73 59.87 73.53 48.96 75 ER9e ExonRegion 1 16.93 8.13 2.45 0.00 0.00 7.34 1.32 0.00 1.24 2.29 13.53 0.00 0.00 3.25 20.31 8.92 13.20 3.70 9.56 0.00 4.41 2.08 8.81