Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 A2BP1 Gene 0 1.47 24.65 5.59 75.28 54.95 36.51 29.12 71.88 86.58 99.88 0.00 0.00 0.00 0.00 0.00 0.00 0.12 40.93 8.64 34.77 0.11 0.36 0.04 2 355637 Transcript 0 0.00 3.81 1.85 33.22 15.13 12.23 8.87 27.91 40.68 31.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41.00 5.39 23.40 0.00 1.39 0.00 3 311745 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 352951 Transcript 0 0.00 0.00 1.77 13.22 11.97 0.00 6.27 12.73 23.52 34.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39.01 8.94 18.60 0.00 0.00 0.00 5 340209 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 422070 Transcript 0 0.00 0.00 0.00 2.00 0.00 0.00 0.00 1.81 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 2.75 0.00 0.00 0.00 7 436368 Transcript 0 0.00 3.16 0.00 1.40 4.16 0.00 0.00 4.68 3.18 3.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.62 0.00 0.00 0.00 0.00 0.00 8 IG42 Intergenic 0 0.11 0.59 1.00 15.36 12.02 1.23 13.56 16.47 12.46 20.66 0.00 0.00 0.00 0.00 0.00 0.00 0.01 7.08 2.35 12.14 0.05 0.02 0.01 9 IG42_SR2 SilentIntergenicRegion 0 0.19 0.18 0.60 10.76 7.26 0.49 16.13 20.18 14.94 22.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.28 2.68 14.25 0.10 0.00 0.00 10 IG42_AR2 ActiveIntergenicRegion 0 0.00 1.48 0.42 13.60 10.86 0.17 12.81 32.32 15.82 27.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.69 3.13 14.27 0.00 0.00 0.00 11 IG42_SR3 SilentIntergenicRegion 0 0.08 0.41 0.58 6.93 9.28 0.05 13.69 19.25 11.27 20.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.31 2.16 12.61 0.00 0.00 0.00 12 IG42_AR3 ActiveIntergenicRegion 0 0.00 0.20 0.82 10.74 9.91 0.24 22.48 31.78 21.62 38.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.11 3.10 13.03 0.00 0.20 0.00 13 IG42_SR4 SilentIntergenicRegion 0 0.00 0.42 1.36 18.25 10.18 0.94 16.80 37.23 22.65 45.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.03 3.04 14.73 0.00 0.04 0.00 14 IG42_AR4 ActiveIntergenicRegion 0 0.00 4.07 0.00 17.89 6.02 0.00 20.36 21.39 9.88 26.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 3.19 12.50 0.00 0.00 0.00 15 IG42_AR5 ActiveIntergenicRegion 0 0.00 2.82 0.00 21.70 4.12 0.00 17.82 28.19 14.54 40.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.12 6.13 7.53 0.00 0.00 0.00 16 IG42_AR6 ActiveIntergenicRegion 0 0.00 0.98 2.01 31.14 14.16 0.95 23.57 34.13 27.38 45.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.06 4.49 20.67 0.00 0.00 0.35 17 IG42_SR5 SilentIntergenicRegion 0 0.08 0.42 1.26 23.48 13.24 1.71 15.55 11.77 12.12 20.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.63 2.26 14.06 0.02 0.02 0.00 18 IG42_AR7 ActiveIntergenicRegion 0 0.00 0.48 0.43 25.06 11.19 4.08 19.77 15.52 7.21 17.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.50 2.17 14.17 0.00 0.00 0.00 19 IG42_SR6 SilentIntergenicRegion 0 0.18 0.82 1.49 24.87 19.17 2.43 18.79 21.90 18.01 29.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.96 3.36 19.15 0.11 0.03 0.01 20 IG42_AR8 ActiveIntergenicRegion 0 0.00 0.30 0.80 15.05 8.16 0.74 21.45 17.17 12.43 16.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.68 3.10 10.33 0.00 0.00 0.00 21 IG42_SR7 SilentIntergenicRegion 0 0.09 0.27 1.27 26.53 17.55 1.55 17.85 18.35 18.57 28.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.97 3.44 18.83 0.00 0.00 0.00 22 IG42_AR9 ActiveIntergenicRegion 0 1.12 0.90 0.22 29.09 33.76 1.02 19.84 16.60 24.02 36.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.83 8.26 19.14 0.39 0.00 0.00 23 IG42_SR8 SilentIntergenicRegion 0 0.40 1.27 2.31 40.54 41.27 3.42 22.64 36.09 22.55 42.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.75 4.69 13.85 0.06 0.15 0.02 24 IG42_AR10 ActiveIntergenicRegion 0 0.40 0.38 0.64 16.35 15.41 1.92 23.84 23.09 15.36 23.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.63 5.53 17.48 0.00 0.00 0.00 25 IG42_SR9 SilentIntergenicRegion 0 0.04 0.35 0.81 9.31 7.77 0.65 11.55 12.72 9.77 15.66 0.00 0.00 0.01 0.00 0.00 0.00 0.00 5.26 2.21 10.49 0.05 0.00 0.00 26 IG42_AR11 ActiveIntergenicRegion 0 0.00 0.00 0.14 7.51 5.22 0.00 8.38 13.30 9.34 19.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.15 0.39 11.48 0.00 0.00 0.00 27 IG42_SR10 SilentIntergenicRegion 0 0.07 0.48 0.97 13.71 10.09 0.54 11.89 22.63 13.58 26.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.61 1.90 11.16 0.05 0.00 0.00 28 IG42_AR20 ActiveIntergenicRegion 0 0.74 5.68 1.84 26.60 21.77 5.77 12.80 20.82 14.43 22.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.86 4.60 6.15 0.00 0.73 0.00 29 ER1a ExonRegion 0 0.00 0.31 0.00 1.55 3.22 0.55 4.77 5.84 6.39 9.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.19 0.49 4.48 0.00 0.00 0.00 30 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 I1_AR9 ActiveIntronRegion 0 0.00 1.06 0.00 7.86 8.78 0.25 10.44 16.50 12.06 14.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.95 0.88 5.11 0.00 0.00 0.00 32 I1_AR10 ActiveIntronRegion 0 0.00 4.07 0.00 6.47 6.35 0.00 11.92 22.25 9.42 9.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.54 0.00 4.26 0.00 0.00 0.00 33 ER2a ExonRegion 0 0.44 8.37 1.09 22.09 8.09 19.99 13.20 24.15 52.92 58.75 0.00 0.00 0.00 0.00 0.00 0.00 0.69 65.54 7.85 44.35 0.00 0.44 0.62 34 E2a_E3a KnownJunction 0 0.00 6.18 8.07 15.25 11.88 18.51 9.58 37.30 49.80 63.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31.38 4.05 55.03 0.00 0.00 0.00 35 E2a_E3b KnownJunction 0 0.00 0.00 0.00 2.00 0.00 0.00 0.00 1.81 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 2.75 0.00 0.00 0.00 36 ER3a ExonRegion 0 0.00 2.03 6.13 10.22 10.70 12.84 5.30 36.30 43.54 53.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28.18 3.19 40.43 0.00 0.00 0.00 37 ER3b ExonRegion 0 0.00 20.39 5.29 30.15 13.89 12.25 12.62 44.31 59.26 66.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 62.51 5.07 35.36 0.00 0.76 0.00 38 E3a_E4a KnownJunction 0 0.00 29.86 10.47 32.33 23.09 22.26 18.95 46.21 57.90 89.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57.50 3.95 50.24 0.00 0.00 0.00 39 ER4a ExonRegion 0 0.00 24.59 8.67 34.78 17.84 13.35 21.50 58.99 64.89 97.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55.74 10.50 37.31 1.10 0.50 0.00 40 E4a_E5a KnownJunction 0 0.00 39.07 3.31 42.05 18.00 13.23 28.84 66.38 85.91 92.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55.59 16.94 24.61 3.15 2.69 0.00 41 ER5a ExonRegion 0 0.00 21.17 3.93 52.26 36.51 24.55 32.20 69.16 97.73 110.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 73.65 6.44 36.60 1.78 1.99 0.00 42 E5a_E6a KnownJunction 0 0.00 22.56 9.02 78.28 61.04 22.37 16.83 88.43 120.83 173.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 83.11 16.66 37.97 0.00 0.00 0.00 43 E6_Aa NovelBoundary 0 0.00 0.00 0.00 22.81 11.29 13.91 17.05 21.65 22.68 5.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.37 0.00 18.34 0.00 0.00 0.00 44 ER6a ExonRegion 0 0.62 23.74 9.86 56.03 34.92 38.24 26.94 76.62 109.62 161.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 84.75 32.43 56.47 0.00 0.00 0.00 45 E6a_E7a KnownJunction 0 2.96 18.88 10.44 54.41 56.71 85.06 33.52 82.27 105.76 126.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 98.49 7.62 71.40 0.00 0.00 0.00 46 ER7a ExonRegion 0 4.23 28.81 6.15 52.70 39.74 59.77 21.99 76.92 89.87 123.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 102.07 3.83 41.25 0.00 0.00 0.00 47 E7a_E8a KnownJunction 0 3.78 29.53 3.67 34.96 28.95 31.29 9.94 49.62 59.32 82.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54.18 0.00 30.04 0.00 0.00 0.00 48 E7a_E9a KnownJunction 0 0.00 0.00 1.77 13.22 11.97 0.00 6.27 12.73 23.52 34.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39.01 8.94 18.60 0.00 0.00 0.00 49 ER8a ExonRegion 0 0.71 23.67 4.55 22.61 21.47 27.14 15.63 39.05 61.22 76.53 0.00 0.00 0.00 0.00 0.00 0.00 0.49 60.52 10.26 31.65 0.00 0.00 0.00 50 E8a_E9a KnownJunction 0 0.00 28.55 3.25 26.24 21.22 20.39 25.22 33.97 53.70 69.98 0.00 0.00 0.00 0.00 0.00 0.00 4.02 51.44 12.14 31.77 0.00 0.00 0.00 51 ER9a ExonRegion 0 0.00 7.05 2.40 16.84 10.26 17.97 8.02 22.57 40.15 63.48 0.00 0.00 0.00 0.00 0.00 0.00 0.97 49.36 14.13 26.38 0.00 0.00 0.00 52 E9a_E10a KnownJunction 0 0.00 3.35 2.99 11.69 3.06 10.16 3.71 16.96 39.96 42.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32.42 8.09 16.81 0.00 0.00 0.00 53 E9a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54 ER10a ExonRegion 0 0.00 3.71 3.28 23.61 12.17 15.31 10.53 52.16 59.63 71.22 0.00 0.00 0.00 0.00 0.00 0.00 2.64 53.22 3.74 33.99 0.00 0.00 0.00 55 E10a_E12a KnownJunction 0 0.00 6.64 3.61 39.72 30.05 39.98 20.45 73.56 76.88 90.52 0.00 0.00 0.00 0.00 0.00 0.00 4.68 56.92 7.91 73.31 0.00 0.00 0.00 56 ER11a ExonRegion 0 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.17 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 57 E11a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.07 0.00 0.00 0.00 0.00 0.00 58 ER12a ExonRegion 0 0.00 7.95 3.07 35.88 23.79 24.49 10.29 50.20 64.68 74.94 0.00 0.00 0.00 0.00 0.00 0.00 0.96 45.17 16.81 43.76 0.00 0.77 0.00 59 E12a_E13a KnownJunction 0 0.00 9.47 0.00 27.04 16.38 15.84 14.88 8.63 21.64 19.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.90 12.14 16.81 0.00 3.12 0.00 60 E12a_E14a KnownJunction 0 0.00 18.55 3.37 32.86 20.12 39.30 7.91 52.78 63.71 88.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 62.84 9.22 31.70 0.00 0.00 0.00 61 ER13a ExonRegion 0 0.00 1.96 2.29 33.66 12.27 9.55 7.79 26.09 37.47 29.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43.37 4.03 22.12 0.00 1.06 0.00 62 E13a_E14a KnownJunction 0 0.00 0.00 3.25 38.96 16.72 11.30 3.93 49.00 62.93 44.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 68.73 0.00 31.26 0.00 0.00 0.00 63 ER14a ExonRegion 0 0.00 10.78 3.81 67.70 30.21 30.40 8.78 55.97 76.12 77.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 85.26 13.92 46.98 0.00 0.00 0.00 64 E14a_E15a KnownJunction 0 0.00 8.55 2.66 62.76 33.62 15.56 8.57 29.53 50.61 46.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43.44 8.47 31.89 0.00 0.00 0.00 65 E14a_E15b KnownJunction 0 0.00 3.16 0.00 1.40 4.16 0.00 0.00 4.68 3.18 3.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.62 0.00 0.00 0.00 0.00 0.00 66 E15_Aa NovelBoundary 0 0.00 2.89 0.00 13.75 20.46 2.67 17.80 11.21 11.52 11.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.77 0.00 5.75 0.00 0.00 0.00 67 ER15a ExonRegion 0 0.00 17.43 3.10 53.67 27.64 24.03 12.28 38.07 76.14 70.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36.07 6.05 43.31 0.00 0.00 0.00 68 E15_Ab KnownBoundary 0 0.00 25.72 1.66 47.41 47.96 49.35 10.55 65.76 97.05 75.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.38 0.00 34.45 0.00 0.00 0.00 69 ER15b ExonRegion 0 2.54 38.30 7.28 110.53 85.47 54.57 46.13 102.10 117.08 131.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46.11 11.53 43.74 0.12 0.35 0.00 70 E15_Da KnownBoundary 0 6.37 35.19 4.67 75.02 91.60 58.83 31.05 68.22 76.82 77.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.54 4.52 20.84 0.00 0.00 0.00 71 ER15c ExonRegion 0 1.37 20.67 7.05 89.75 62.91 33.42 23.86 77.51 88.50 105.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.76 4.35 24.06 0.00 0.39 0.00