Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CHSY1 Gene 0 13.31 22.77 26.95 27.16 23.39 29.54 28.85 27.60 36.23 41.72 84.10 67.13 58.73 75.63 24.75 83.99 74.59 108.43 40.63 36.87 80.47 150.04 109.24 2 254190 Transcript 0 10.23 27.30 27.15 28.03 24.34 30.88 27.45 28.97 45.73 58.90 105.74 52.48 43.87 94.79 28.31 106.99 121.99 156.74 66.91 57.00 110.86 185.91 158.68 3 IG11_SR4 SilentIntergenicRegion 0 14.69 4.35 8.86 6.30 18.53 15.03 13.07 9.49 5.02 9.32 7.53 15.22 24.27 8.83 13.70 10.89 15.95 4.99 5.58 4.52 2.57 13.79 10.76 4 IG11_AR3 ActiveIntergenicRegion 0 27.72 9.66 23.81 38.02 43.73 36.98 30.46 39.86 15.25 54.38 20.61 18.54 30.18 28.67 51.32 17.40 17.98 16.19 26.96 9.62 7.79 14.37 9.19 5 ER1a ExonRegion 0 1.29 1.86 2.67 2.59 2.55 5.60 2.03 3.07 5.55 7.50 20.43 2.26 1.95 14.59 3.08 25.39 23.24 32.57 8.11 6.39 31.52 22.86 29.49 6 E1a_E2a KnownJunction 1 7.11 9.21 21.94 20.88 10.61 25.16 12.37 25.18 43.40 55.50 106.34 41.56 0.00 81.82 14.34 83.48 145.02 205.82 50.45 47.87 121.95 145.80 129.67 7 E1a_E3a NovelJunction 0 0.00 2.89 0.00 0.00 0.00 0.00 4.33 2.14 0.00 0.00 8.79 0.00 6.33 2.47 4.45 4.02 0.00 1.87 0.00 0.00 5.44 9.00 4.10 8 I1_SR2 SilentIntronRegion 0 10.07 5.83 15.17 9.16 6.53 2.03 7.71 10.34 8.82 3.00 4.39 11.69 7.22 1.26 6.51 13.08 13.27 6.02 9.88 6.70 9.33 2.89 13.01 9 I1_AR3 ActiveIntronRegion 0 18.82 3.69 27.18 21.38 11.66 6.32 12.01 7.01 8.02 4.96 5.96 7.77 11.17 6.42 9.20 23.73 9.59 4.67 17.92 6.56 6.00 2.27 25.05 10 I1_AR4 ActiveIntronRegion 0 8.85 8.27 19.56 9.26 6.27 1.34 8.31 9.02 7.84 1.55 3.21 7.79 4.72 2.50 2.15 14.98 8.40 7.90 3.34 7.00 10.52 2.05 8.73 11 I1_SR4 SilentIntronRegion 0 0.29 4.28 16.02 6.50 0.24 4.75 4.25 2.44 4.94 1.79 1.70 10.36 3.70 1.97 0.62 12.52 7.50 4.03 8.54 1.35 9.62 3.79 8.10 12 I1_AR5 ActiveIntronRegion 0 7.21 7.42 13.80 7.50 5.66 2.26 11.04 4.44 3.02 1.71 4.97 12.45 16.42 2.75 5.46 14.74 7.66 6.39 10.28 2.84 14.52 2.28 17.16 13 I1_AR8 ActiveIntronRegion 0 2.46 0.72 2.69 3.84 3.83 2.66 5.93 2.51 5.68 0.13 5.28 6.99 11.53 2.46 4.29 12.63 17.87 10.19 8.67 8.92 10.88 1.69 23.03 14 I1_AR9 ActiveIntronRegion 0 2.04 0.28 6.15 5.02 3.87 1.18 2.36 1.18 4.30 0.00 3.37 11.98 8.91 2.37 3.28 16.37 12.27 8.22 8.81 10.52 14.44 1.82 22.59 15 I1_AR10 ActiveIntronRegion 0 3.25 0.00 8.50 4.00 11.24 0.00 4.50 1.73 5.43 1.15 5.54 12.99 23.14 3.03 0.00 23.78 3.52 9.73 3.61 4.68 16.60 2.22 20.75 16 E2_Aa NovelBoundary 1 10.67 3.22 5.50 6.96 4.33 0.00 1.94 5.09 10.85 3.33 2.32 12.30 26.78 2.47 0.00 4.27 9.54 1.58 9.60 5.11 8.71 0.00 14.08 17 ER2a ExonRegion 0 13.47 42.09 45.73 41.72 31.67 49.56 38.03 43.08 76.08 90.97 170.14 102.59 79.81 157.92 45.41 159.79 170.79 246.86 75.56 87.06 175.55 299.97 221.85 18 E2_Da NovelBoundary 0 10.37 0.00 6.09 15.72 8.23 14.48 0.00 3.74 8.85 5.21 5.32 0.00 6.82 0.00 5.19 16.58 4.77 13.80 16.00 2.68 5.56 0.00 12.55 19 E2a_E3a KnownJunction 0 13.04 58.41 35.36 44.02 49.66 41.74 50.83 42.31 65.97 97.94 145.25 38.41 68.18 141.62 51.80 179.53 198.41 192.59 157.18 107.00 147.34 302.62 300.82 20 I2_AR1 ActiveIntronRegion 0 5.99 2.55 4.35 5.09 7.82 1.66 11.47 4.38 6.14 3.92 3.75 10.50 16.21 0.65 4.46 13.46 9.67 3.56 6.82 6.77 4.88 5.05 20.53 21 I2_SR2 SilentIntronRegion 0 3.23 2.20 3.55 3.64 2.65 1.92 9.67 3.34 5.16 2.94 2.80 16.39 13.35 1.65 1.70 11.53 10.75 5.67 4.86 8.22 9.67 2.73 15.43 22 I2_AR2 ActiveIntronRegion 0 10.08 4.09 4.06 3.87 3.68 0.78 11.77 3.82 3.89 1.63 2.45 18.62 15.35 0.71 3.47 10.38 11.18 3.80 8.76 8.10 8.63 1.76 13.36 23 I2_AR3 ActiveIntronRegion 1 4.23 2.03 4.90 2.73 2.68 7.34 12.91 6.70 3.86 4.59 1.93 1.62 9.38 0.00 10.52 23.41 10.32 12.47 3.19 13.83 13.77 2.08 11.75 24 I2_AR4 ActiveIntronRegion 0 4.77 1.22 1.98 3.82 2.96 2.60 11.08 2.52 4.13 4.06 1.78 7.68 10.17 1.17 3.43 12.24 10.13 5.08 3.56 6.10 16.95 1.61 18.74 25 I2_AR5 ActiveIntronRegion 0 6.61 2.83 3.80 3.29 4.64 3.39 15.63 4.17 5.95 5.34 0.89 12.99 9.64 2.17 2.98 9.62 18.33 2.55 6.26 7.14 9.16 0.96 15.63 26 I2_SR5 SilentIntronRegion 0 4.99 2.79 3.51 4.88 4.29 2.15 10.57 4.05 4.96 3.72 2.45 14.01 11.33 1.69 3.42 9.47 9.50 6.61 3.75 7.37 8.03 3.51 13.77 27 I2_SR6 SilentIntronRegion 0 0.59 0.79 1.12 4.81 0.15 0.00 6.69 3.26 4.91 1.27 1.34 10.22 18.11 0.00 2.26 11.23 11.37 4.05 14.69 2.72 3.92 10.53 9.79 28 I2_AR7 ActiveIntronRegion 0 1.21 0.50 1.28 3.56 13.49 1.24 2.35 6.21 3.38 1.94 7.93 6.54 15.70 2.06 0.00 10.49 7.88 6.94 5.46 4.99 2.70 10.76 17.08 29 I2_AR8 ActiveIntronRegion 1 5.56 2.65 11.81 4.33 2.88 2.40 12.65 12.09 18.76 6.80 28.90 30.90 15.76 22.07 10.29 33.69 35.63 36.70 7.62 11.69 17.45 41.08 28.68 30 I2_AR11 ActiveIntronRegion 0 0.62 2.86 4.62 2.64 2.19 4.94 5.28 0.41 6.83 4.80 9.30 12.80 4.97 6.31 1.65 9.45 13.41 18.46 6.02 6.04 17.16 18.42 16.23 31 I2_AR12 ActiveIntronRegion 0 0.00 4.73 3.12 3.37 4.53 11.22 8.78 3.05 8.97 6.21 14.24 14.58 3.52 4.49 1.71 2.36 8.20 14.62 5.01 7.32 20.09 22.98 9.11 32 I2_SR11 SilentIntronRegion 0 2.61 2.57 3.18 4.09 3.91 3.52 6.10 4.49 7.01 5.47 7.49 12.07 2.89 4.03 3.44 10.58 7.93 19.84 4.28 7.03 19.76 19.08 16.17 33 I2_AR13 ActiveIntronRegion 0 3.61 2.28 4.57 4.66 2.47 1.56 7.54 7.01 11.39 4.63 13.60 12.84 13.34 7.74 4.33 11.01 8.02 19.65 4.16 6.16 7.18 32.56 23.13 34 ER3a ExonRegion 0 16.22 24.94 30.03 30.94 27.22 32.34 34.00 31.24 37.66 42.58 86.56 77.58 69.39 78.02 26.90 86.76 72.48 105.88 43.26 36.67 77.96 158.29 111.59 35 IG10_AR1 ActiveIntergenicRegion 0 20.98 1.37 5.27 5.28 18.54 6.53 8.28 4.96 4.07 1.97 23.25 32.34 39.98 63.01 98.39 71.22 44.15 1.32 2.76 1.84 16.96 14.84 13.28