Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC009690.1 Gene 0 13.60 15.96 31.34 27.24 13.21 8.92 24.45 28.01 24.39 13.05 2.92 11.54 11.24 4.48 11.86 13.36 10.15 18.24 17.21 16.36 5.95 1.80 21.20 2 501211 Transcript 0 4.76 5.73 10.70 9.26 4.48 3.03 8.50 9.65 8.36 4.46 0.99 3.92 3.82 1.55 4.10 4.54 3.55 6.30 6.23 5.61 2.02 0.61 7.34 3 ER1a ExonRegion 0 13.85 16.24 31.92 27.75 13.45 9.09 24.89 28.52 24.84 13.29 2.98 11.75 11.45 4.56 12.08 13.61 10.33 18.57 17.50 16.66 6.06 1.83 21.59 4 E1_Da NovelBoundary 0 6.59 8.09 29.63 18.25 4.33 5.34 10.55 18.40 14.24 8.57 0.00 6.30 5.84 0.00 0.00 11.28 13.09 9.91 16.28 14.38 0.00 0.00 3.84 5 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 Ix Intron 0 11.35 16.54 30.13 28.20 15.31 10.40 29.26 20.87 21.20 10.61 2.85 12.98 12.44 1.16 7.53 10.11 9.52 13.80 18.27 16.71 4.73 2.65 16.52 7 Ix_SR2 SilentIntronRegion 0 13.39 19.00 32.28 31.29 17.82 11.21 31.93 23.79 22.06 11.41 2.47 13.31 14.99 0.70 7.03 9.57 7.64 9.98 14.25 14.36 3.79 2.84 15.21 8 Ix_AR2 ActiveIntronRegion 0 8.96 15.86 32.81 29.58 12.88 11.20 32.63 20.20 23.69 10.59 3.38 17.51 8.93 1.49 7.10 10.93 17.91 28.29 38.52 27.45 7.40 2.39 23.22 9 I1_AR1 ActiveIntronRegion 0 5.99 5.59 2.44 6.70 2.73 4.03 4.58 2.83 4.92 8.33 8.20 4.76 3.04 12.79 14.09 16.12 12.45 9.53 5.26 8.53 4.68 3.44 6.23 10 I1_SR1 SilentIntronRegion 0 4.80 8.64 4.66 8.63 9.86 5.20 8.25 2.92 2.61 4.84 6.02 25.04 24.54 11.56 11.27 5.89 9.35 1.83 6.32 7.23 1.25 7.08 0.83 11 I1_AR2 ActiveIntronRegion 0 7.20 11.24 3.36 8.63 9.10 3.64 4.88 5.85 6.52 8.23 1.64 24.14 5.90 8.22 7.76 9.68 8.42 5.86 8.57 4.52 1.56 7.08 4.99 12 Ix_AR2 ActiveIntronRegion 0 7.89 2.82 10.98 11.60 27.18 8.41 33.42 5.26 4.25 3.19 3.23 2.72 6.30 4.29 14.05 12.36 6.88 7.87 10.65 10.79 0.94 1.52 1.80 13 Ix_SR1 SilentIntronRegion 0 7.13 9.14 13.85 17.44 7.94 13.73 13.62 11.13 10.17 9.23 4.17 5.60 5.28 8.16 14.02 13.76 16.38 33.52 12.33 9.21 11.96 5.59 17.80 14 Ix Intron 0 35.33 41.30 34.98 74.99 36.84 34.56 31.88 27.14 34.26 30.76 13.38 17.00 16.79 17.70 16.59 29.95 20.31 61.48 62.48 42.07 20.33 13.14 34.79 15 Ix_SR2 SilentIntronRegion 0 40.62 46.16 40.85 87.35 41.42 39.56 35.14 31.45 39.61 35.60 15.40 16.95 19.09 19.59 18.26 33.21 22.79 71.54 71.09 46.56 22.92 14.38 38.81 16 Ix_AR1 ActiveIntronRegion 0 18.14 39.51 7.35 19.08 38.61 26.20 40.48 8.64 12.35 11.47 11.60 36.49 9.38 17.63 21.55 28.87 22.16 17.16 46.42 42.55 24.24 16.37 29.79 17 Ix_SR1 SilentIntronRegion 0 12.21 27.11 6.28 15.73 20.90 12.84 25.16 7.35 10.19 8.63 3.83 20.66 4.10 6.94 9.07 22.60 11.90 13.51 28.34 32.45 10.42 11.63 24.04 18 I1 Intron 0 34.87 31.54 23.75 60.15 42.88 35.53 26.73 32.17 37.68 26.42 6.48 15.56 17.51 9.23 15.27 18.38 9.97 33.29 38.01 24.82 12.23 11.54 19.83 19 I1_SR1 SilentIntronRegion 0 27.20 31.14 25.86 67.03 34.42 46.61 28.03 37.86 42.15 29.99 10.31 15.06 12.87 16.70 20.09 25.40 20.09 46.41 33.22 28.41 28.23 14.48 21.81 20 I1_AR1 ActiveIntronRegion 0 54.64 46.02 52.40 117.61 52.53 74.31 42.30 74.28 75.58 55.99 20.37 18.04 13.34 18.88 24.77 41.89 18.96 96.73 75.43 48.28 24.66 20.68 43.96 21 I1_AR2 ActiveIntronRegion 0 46.19 43.02 74.48 184.76 46.15 83.59 36.01 73.84 88.85 78.12 16.71 32.04 19.00 25.42 34.96 55.43 23.42 104.03 125.97 55.39 33.11 21.57 50.94 22 I1_AR3 ActiveIntronRegion 0 27.70 27.94 40.44 85.03 37.34 49.83 24.81 48.62 67.82 47.42 12.86 18.64 6.53 26.62 24.85 27.65 9.90 112.55 64.95 28.49 18.68 7.88 42.01 23 I1_AR4 ActiveIntronRegion 0 77.69 33.06 27.66 68.44 54.41 75.20 34.66 34.51 54.38 34.87 9.76 14.11 22.16 16.24 19.48 32.98 13.57 88.17 74.20 25.50 19.64 11.03 45.44 24 I1_AR5 ActiveIntronRegion 0 78.81 42.12 37.47 67.68 39.57 38.08 37.04 45.39 57.24 31.24 6.66 10.25 19.13 11.97 30.84 29.41 24.24 72.89 55.74 27.32 26.56 11.51 20.40 25 I1_AR6 ActiveIntronRegion 0 56.19 41.79 37.19 57.51 20.60 32.73 23.83 53.75 53.17 35.32 12.37 21.00 3.28 10.31 22.05 22.29 17.33 63.56 18.95 43.62 26.33 13.02 25.99 26 I1_AR7 ActiveIntronRegion 0 43.98 37.51 32.40 48.61 31.51 32.60 23.83 51.47 57.09 32.50 16.75 30.31 0.00 13.90 26.11 24.44 14.67 48.04 18.40 43.03 23.51 6.48 26.76 27 I1_AR8 ActiveIntronRegion 0 44.45 28.81 25.12 45.20 35.68 46.15 26.48 47.24 55.79 31.92 16.75 23.81 0.00 13.81 21.76 22.79 13.20 44.04 30.79 30.50 20.20 4.17 26.43 28 I1_AR9 ActiveIntronRegion 0 63.16 57.96 27.47 76.41 62.05 35.35 38.76 42.55 50.44 30.16 9.21 20.81 28.48 8.95 22.55 21.37 10.04 30.81 32.98 41.15 13.52 11.97 23.68 29 I1_SR2 SilentIntronRegion 0 70.63 59.07 16.04 71.64 57.55 35.91 37.38 31.40 39.26 35.09 5.93 18.15 22.93 6.60 18.39 13.37 13.26 9.92 51.89 32.90 7.60 19.70 14.43 30 I1_AR10 ActiveIntronRegion 0 14.28 24.85 11.59 28.86 30.99 20.58 23.37 19.99 23.25 13.72 2.29 17.96 23.77 5.84 14.09 11.94 8.11 13.92 29.07 25.45 10.43 9.44 14.61 31 I1_AR11 ActiveIntronRegion 0 19.05 8.90 8.58 45.66 56.53 26.13 16.22 21.61 34.74 18.06 7.73 16.78 4.69 2.84 3.26 17.46 14.85 26.56 25.08 34.84 21.76 13.02 16.89 32 I1_SR3 SilentIntronRegion 0 26.32 23.45 12.37 36.36 43.56 21.21 21.98 16.74 20.07 12.37 1.82 13.70 17.90 4.84 8.63 8.52 5.24 10.62 20.35 12.69 4.01 8.05 10.64 33 I1_AR12 ActiveIntronRegion 0 7.28 9.95 14.62 18.09 12.95 20.12 6.17 19.32 28.52 21.65 1.34 1.24 3.83 3.33 7.17 6.18 2.57 14.72 22.63 7.75 7.65 7.60 6.83 34 Ix_AR2 ActiveIntronRegion 0 2.66 4.44 0.79 1.34 4.97 3.38 0.96 4.02 6.21 2.70 0.00 0.00 0.00 0.26 0.00 0.00 2.40 7.29 10.42 18.42 0.00 2.95 2.14 35 E2_Aa NovelBoundary 0 6.52 3.35 1.54 10.65 0.00 26.23 14.40 21.28 15.13 21.84 2.32 7.50 0.00 0.00 0.00 0.00 0.00 30.43 3.95 6.39 0.00 2.94 7.60 36 ER2a ExonRegion 0 0.42 0.97 0.18 0.03 0.00 0.00 0.60 0.43 0.25 0.09 0.00 0.00 0.00 0.08 0.22 0.00 0.33 0.32 1.19 0.16 0.00 0.00 0.44