Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MRPS11 Gene 0 60.00 74.14 118.68 67.53 90.73 94.33 72.45 75.98 62.77 81.31 159.99 54.46 27.22 151.82 226.92 143.36 116.18 160.31 134.36 93.53 69.44 51.76 53.65 2 325844 Transcript 0 12.22 39.10 21.55 15.08 16.39 17.29 20.77 23.60 15.94 22.85 9.14 11.22 7.19 11.68 19.29 9.64 8.98 17.67 15.17 26.27 6.93 5.28 8.48 3 421647 Transcript 0 13.78 5.39 34.56 35.33 23.77 9.88 16.12 6.08 19.30 37.15 4.58 5.85 6.49 6.89 24.11 55.28 17.20 199.43 140.52 20.45 5.68 12.98 30.90 4 353598 Transcript 0 0.00 0.00 1.57 0.00 0.00 0.00 0.00 0.00 0.00 5.05 5.16 0.00 0.00 4.89 11.37 3.76 30.20 4.93 8.09 0.00 5.00 2.82 8.11 5 ER1a ExonRegion 0 5.37 3.24 0.80 0.93 8.69 13.72 10.32 4.23 0.26 1.77 5.63 0.00 0.16 5.64 8.32 4.82 3.04 4.54 1.52 2.04 5.14 2.53 3.75 6 E1_Ab KnownBoundary 0 16.30 22.04 0.00 0.00 36.50 46.51 37.80 2.46 1.79 1.67 7.90 0.00 0.00 16.25 36.84 31.87 12.81 8.83 4.80 5.82 10.81 7.84 16.39 7 E1_Ac KnownBoundary 1 175.07 92.81 7.84 21.14 450.25 488.92 384.79 14.13 8.33 8.78 123.72 0.00 6.82 75.23 108.04 90.75 73.31 55.75 28.80 38.67 67.09 51.19 61.29 8 ER1b ExonRegion 1 113.02 71.99 6.98 18.26 317.61 385.65 299.61 17.28 10.37 12.16 103.22 0.00 4.69 120.51 156.96 86.49 67.34 37.69 28.35 31.70 64.79 44.38 55.50 9 ER1c ExonRegion 1 255.01 193.35 87.79 71.23 644.81 610.08 407.18 47.75 57.37 69.10 256.14 9.74 12.90 281.15 452.87 468.48 253.24 369.20 335.86 137.73 97.82 98.02 232.18 10 E1a_E2a KnownJunction 1 43.04 31.44 133.88 69.09 57.81 46.85 25.97 50.44 74.13 66.13 28.74 17.11 6.33 16.72 65.39 169.78 9.07 435.92 209.32 47.81 19.27 19.10 69.66 11 E1a_E2b KnownJunction 0 13.78 5.39 34.56 35.33 23.77 9.88 16.12 6.08 19.30 37.15 4.58 5.85 6.49 6.89 24.11 55.28 17.20 199.43 140.52 20.45 5.68 12.98 30.90 12 ER2a ExonRegion 1 39.68 24.91 100.17 58.60 71.58 63.27 45.01 41.05 60.21 62.51 37.21 0.00 1.17 25.99 98.64 150.84 23.93 287.33 180.77 62.77 23.69 23.44 78.56 13 ER2b ExonRegion 0 20.08 19.81 121.88 62.02 17.62 16.75 14.84 51.50 65.48 86.47 248.63 48.08 21.79 126.83 167.14 126.83 209.36 133.41 124.12 77.73 122.92 53.32 56.71 14 E2_Da NovelBoundary 0 12.00 8.81 24.39 12.65 11.97 5.62 14.26 9.69 5.87 21.49 7.79 0.00 6.17 21.66 23.61 11.96 31.79 71.67 20.61 30.10 13.84 14.63 18.61 15 E2a_E3a KnownJunction 0 42.90 24.21 166.02 128.52 19.27 43.27 26.63 86.83 92.59 117.01 368.51 80.28 25.81 417.57 490.76 270.10 280.13 213.86 227.87 163.05 144.62 171.64 106.53 16 E2a_E4a KnownJunction 0 0.00 0.00 1.57 0.00 0.00 0.00 0.00 0.00 0.00 5.05 5.16 0.00 0.00 4.89 11.37 3.76 30.20 4.93 8.09 0.00 5.00 2.82 8.11 17 I2 Intron 0 17.26 14.22 12.48 15.23 17.36 13.03 21.29 10.91 10.94 13.54 12.39 24.45 19.61 16.88 17.26 19.51 16.16 14.53 19.55 20.99 5.13 7.61 9.81 18 I2_AR1 ActiveIntronRegion 0 8.49 8.84 19.85 19.70 14.32 7.67 16.37 11.64 11.08 12.29 11.96 20.01 19.19 18.34 24.88 26.34 25.39 34.27 41.55 25.96 8.10 10.45 16.69 19 I2_SR1 SilentIntronRegion 0 16.03 15.18 9.84 14.55 15.88 13.49 21.48 10.92 11.04 14.83 12.17 27.54 17.19 13.00 9.31 14.04 12.08 6.85 12.27 19.73 3.75 6.96 7.04 20 I2_AR3 ActiveIntronRegion 0 29.99 17.65 11.38 12.24 24.54 17.74 26.23 10.18 10.60 11.71 13.50 21.52 26.38 25.30 29.49 26.26 16.74 12.99 14.56 18.98 5.52 6.28 9.53 21 E3_Aa NovelBoundary 1 3.70 22.76 14.13 16.02 45.84 14.25 26.59 23.82 7.20 11.60 9.84 42.01 5.84 27.14 8.90 13.67 21.51 22.09 13.74 6.52 2.47 4.78 12.12 22 ER3a ExonRegion 0 59.60 59.67 229.34 149.82 525.99 401.12 215.47 149.33 129.71 155.54 329.02 127.87 69.83 386.00 587.05 596.38 257.60 774.21 492.54 193.62 143.53 116.38 255.19 23 E3a_E4a KnownJunction 0 63.79 115.05 245.62 120.23 445.25 786.65 502.26 139.04 108.30 127.65 323.98 139.10 106.00 242.04 452.56 288.30 264.80 298.55 196.24 141.90 171.12 83.52 89.97 24 I3 Intron 0 10.60 8.37 7.34 13.91 14.02 11.42 18.32 8.82 8.97 9.52 14.46 21.97 17.37 19.41 11.06 23.11 13.27 17.84 14.69 19.63 5.88 5.69 8.22 25 I3_SR1 SilentIntronRegion 0 6.25 8.17 5.58 8.63 12.46 10.99 15.72 5.11 9.33 9.11 9.53 12.79 10.05 17.84 8.31 15.23 11.65 14.28 14.66 19.89 6.42 4.70 7.36 26 I3_AR1 ActiveIntronRegion 0 11.38 14.24 6.89 7.33 8.03 9.63 24.82 3.46 7.72 12.62 6.52 12.99 6.45 22.94 9.07 14.86 0.00 8.55 6.37 34.57 8.81 4.17 8.81 27 I3_AR2 ActiveIntronRegion 0 10.86 7.82 8.15 14.12 14.35 11.73 19.75 9.96 7.91 10.69 16.27 23.29 23.79 23.45 12.05 27.57 14.25 22.71 16.19 21.12 7.09 5.62 8.31 28 I3_AR3 ActiveIntronRegion 1 19.58 17.54 2.91 9.54 10.70 16.50 9.60 9.29 4.01 5.59 7.73 34.64 4.69 29.64 11.24 37.89 16.09 19.17 29.07 35.64 6.61 0.00 14.68 29 I3_SR2 SilentIntronRegion 0 8.76 7.03 5.84 13.37 15.20 8.79 11.51 7.29 8.12 5.35 12.58 21.05 6.74 10.32 8.95 15.49 10.60 5.94 9.77 14.85 2.65 4.58 6.51 30 I3_AR4 ActiveIntronRegion 0 18.17 12.63 8.66 22.30 13.64 14.45 25.78 11.55 15.17 10.85 16.81 30.78 14.79 15.49 13.79 24.75 15.62 18.09 14.73 17.82 3.98 9.60 11.38 31 E4_Aa NovelBoundary 0 23.71 59.92 25.78 14.55 12.31 11.81 15.77 17.95 13.28 14.61 18.64 32.41 6.82 14.19 29.05 42.72 35.16 34.95 20.24 25.89 5.44 17.33 11.78 32 ER4a ExonRegion 0 118.43 145.42 292.95 157.33 137.29 253.64 200.18 165.92 127.62 165.57 408.94 180.27 80.27 366.60 528.45 288.30 292.74 311.81 254.56 197.22 163.74 114.69 77.57 33 E4_Da NovelBoundary 1 6.96 8.88 7.51 22.44 0.00 2.67 2.25 8.54 7.99 10.58 2.58 24.91 0.00 11.95 4.45 12.65 12.81 10.86 0.00 26.85 5.75 5.27 0.00 34 E4a_E5a KnownJunction 0 213.67 109.45 279.11 128.36 57.13 48.15 40.85 185.74 102.46 163.62 367.20 119.89 45.61 333.57 651.46 244.81 242.08 274.59 191.82 198.78 143.20 112.55 58.99 35 I4 Intron 0 26.00 22.81 15.55 17.96 13.07 12.46 21.63 15.10 8.99 12.57 14.84 18.63 16.00 23.80 17.66 30.29 18.89 27.79 17.34 15.54 5.95 8.72 9.70 36 I4_AR1 ActiveIntronRegion 0 6.23 10.88 9.84 12.18 5.20 5.67 17.05 11.21 6.46 7.61 15.89 22.18 11.32 20.18 18.65 35.86 14.73 33.37 22.74 17.85 10.23 7.81 9.98 37 I4_SR1 SilentIntronRegion 0 26.08 32.13 4.80 11.62 1.84 24.36 24.60 12.57 3.24 4.31 18.86 19.37 22.25 31.60 10.59 51.85 24.18 22.40 45.24 13.86 8.90 9.43 24.29 38 I4_SR2 SilentIntronRegion 0 31.42 24.38 16.62 19.30 18.12 12.99 25.70 18.55 10.01 13.34 14.55 20.29 20.29 24.40 21.10 28.67 19.63 21.32 11.61 15.35 4.28 10.46 8.49 39 I4_AR2 ActiveIntronRegion 0 30.70 26.57 21.02 21.68 12.12 13.52 16.12 11.86 10.58 17.33 13.59 12.28 9.15 23.42 11.84 23.37 19.33 38.50 17.25 14.69 5.20 5.70 7.97 40 E5_Aa NovelBoundary 1 16.52 11.84 16.94 26.84 11.71 13.23 27.65 8.17 13.05 16.60 0.00 0.00 35.06 19.66 14.83 30.85 31.60 25.25 4.80 21.86 9.20 8.51 12.29 41 ER5a ExonRegion 0 200.17 105.93 274.26 133.36 62.07 63.40 57.57 195.03 137.55 159.38 421.61 138.15 59.34 434.16 643.77 284.11 246.77 310.84 233.93 216.89 163.48 118.98 96.69 42 E5_Da NovelBoundary 0 32.52 12.76 23.33 10.75 0.00 8.40 9.98 12.77 13.77 6.45 4.53 12.15 13.64 7.30 8.90 3.93 16.64 21.27 16.66 6.01 0.00 0.00 3.84 43 E5a_E6a KnownJunction 0 191.96 119.39 403.56 207.97 74.11 87.56 61.78 235.72 192.47 194.05 422.84 152.60 46.91 401.26 669.14 236.43 215.24 472.49 216.67 182.68 196.02 98.65 83.31 44 I5 Intron 0 18.19 9.99 10.69 11.32 10.36 3.81 10.50 5.11 5.04 8.07 8.40 7.48 6.02 12.50 16.40 19.09 10.91 15.79 9.63 12.46 5.40 4.13 6.10 45 I5_SR1 SilentIntronRegion 0 20.48 9.41 12.90 8.51 3.71 2.63 8.67 5.43 5.54 4.37 8.78 6.49 8.64 12.08 15.05 20.93 13.23 13.75 6.48 9.35 2.24 6.38 4.49 46 I5_AR2 ActiveIntronRegion 1 23.54 15.10 14.33 16.52 6.00 9.17 5.58 8.64 7.19 10.32 5.74 4.59 4.55 13.63 21.72 31.70 3.90 28.50 5.21 8.06 11.15 4.67 7.65 47 I5_AR3 ActiveIntronRegion 0 19.07 9.64 10.24 12.85 12.77 3.83 10.43 4.46 4.70 10.92 6.95 10.65 4.27 11.93 20.71 20.22 7.08 18.51 13.81 13.59 6.83 2.91 7.65 48 E6_Aa NovelBoundary 0 34.38 9.47 20.82 26.47 15.53 0.00 3.84 8.95 5.56 14.16 2.68 6.30 0.00 12.01 17.80 34.78 12.06 39.30 17.04 19.30 6.30 2.63 8.37 49 ER6a ExonRegion 0 107.81 90.44 234.36 123.49 73.07 89.89 70.40 129.83 112.57 145.91 329.35 86.90 40.29 309.04 461.18 242.14 216.47 249.42 244.04 152.83 140.17 109.96 65.43 50 E6_Da KnownBoundary 0 16.23 33.15 31.19 24.17 10.87 14.71 18.81 27.97 24.07 46.47 11.21 0.00 0.00 18.89 8.90 3.33 26.93 24.00 44.90 37.33 8.09 15.49 3.93 51 E6_Db KnownBoundary 0 7.11 21.25 28.71 28.67 0.00 2.56 5.70 38.36 13.86 25.20 24.37 12.15 0.00 4.59 11.00 3.25 8.88 11.19 9.51 22.82 9.14 3.12 3.24 52 ER6b ExonRegion 0 59.79 79.82 77.81 60.31 22.74 36.68 37.73 73.89 45.08 84.30 60.40 17.32 14.07 69.43 74.71 40.12 51.99 52.66 74.06 69.68 18.18 23.96 16.15 53 ER6c ExonRegion 0 19.07 74.97 42.29 29.23 24.09 20.86 31.23 42.97 31.62 43.94 12.65 22.44 14.21 17.72 30.26 14.46 14.92 30.79 28.83 50.51 8.72 8.03 13.20 54 IG14_AR1 ActiveIntergenicRegion 0 12.07 41.72 32.89 26.58 27.55 30.07 30.08 36.57 31.15 40.12 7.87 16.38 7.20 15.06 15.09 18.41 6.23 44.00 37.35 48.19 9.92 8.54 5.30 55 IG14_AR3 ActiveIntergenicRegion 0 7.76 7.47 4.87 14.78 8.09 5.00 5.73 7.05 3.34 7.29 0.00 1.19 0.85 0.85 3.42 2.92 1.66 15.75 12.09 6.84 2.05 1.45 2.95