Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ARID3B Gene 0 34.30 14.76 43.70 60.97 51.92 43.97 88.49 145.22 54.29 152.04 160.45 75.08 65.31 236.28 199.14 129.11 221.74 76.59 142.72 26.44 12.47 8.05 6.72 2 346246 Transcript 0 8.67 5.05 5.40 13.66 11.76 32.10 36.07 20.34 10.03 28.84 23.19 5.13 10.49 8.01 13.91 13.03 26.48 18.77 8.79 3.88 1.81 0.00 3.65 3 382537 Transcript 0 4.37 1.74 8.08 13.65 8.56 14.20 13.53 23.21 11.90 17.41 20.59 11.99 5.58 38.06 29.73 31.09 27.59 21.28 20.88 13.37 1.75 0.93 4.29 4 395077 Transcript 0 11.04 1.02 3.06 11.91 5.35 26.43 31.04 30.81 15.07 21.96 29.69 5.41 7.94 49.39 32.05 18.76 49.31 17.59 9.25 3.27 1.10 2.39 0.37 5 IG37_SR1 SilentIntergenicRegion 0 14.49 4.50 4.86 8.04 11.72 2.60 10.28 2.69 3.62 6.80 0.87 3.30 4.34 2.42 5.73 6.36 5.83 5.58 5.47 3.60 1.53 0.73 2.27 6 IG37_AR1 ActiveIntergenicRegion 0 37.25 14.06 16.39 19.48 36.48 10.75 21.04 17.28 6.81 20.75 3.76 8.69 12.75 6.61 10.52 10.71 6.13 1.71 6.68 3.92 1.49 3.28 1.84 7 IG37_AR2 ActiveIntergenicRegion 0 7.00 2.20 7.32 16.80 15.99 6.16 9.87 12.87 9.95 18.33 0.00 3.67 2.81 4.99 4.30 10.11 6.05 3.92 3.41 1.62 1.93 0.32 2.97 8 IG37_AR3 ActiveIntergenicRegion 0 1.06 2.03 3.68 7.04 8.92 9.78 7.94 5.19 11.73 17.39 0.00 12.99 0.00 3.25 5.80 5.94 6.60 7.39 0.00 0.00 6.61 0.00 2.94 9 ER1a ExonRegion 0 0.00 2.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER1b ExonRegion 1 9.88 7.99 2.87 6.62 22.68 29.12 71.48 16.32 6.32 28.36 60.26 4.61 4.92 70.07 77.00 76.92 113.64 38.24 81.23 9.51 5.58 1.71 6.37 11 E1a_E2a KnownJunction 1 20.08 8.49 3.19 5.46 22.75 26.63 84.17 28.22 19.82 27.75 84.23 0.00 13.64 101.71 83.19 158.16 136.42 44.02 102.97 13.74 5.56 0.00 12.55 12 I1 Intron 1 11.09 5.56 6.44 7.45 12.22 6.99 18.39 12.24 11.82 8.99 6.39 26.12 42.79 9.98 19.29 16.67 28.40 6.64 17.28 7.94 1.98 1.66 3.11 13 I1_AR2 ActiveIntronRegion 0 10.57 7.25 3.92 7.72 14.24 4.80 22.57 7.79 12.44 7.78 9.36 17.39 23.47 9.01 21.81 20.75 25.10 7.51 15.29 9.76 0.82 1.30 2.63 14 I1_SR2 SilentIntronRegion 1 13.13 11.82 6.08 6.74 15.92 7.37 19.15 8.97 13.21 8.84 5.68 36.65 59.70 10.97 16.00 14.21 25.59 4.98 15.56 9.62 2.27 1.24 2.81 15 I1_AR3 ActiveIntronRegion 0 7.83 8.13 7.23 14.04 28.90 9.17 41.44 17.28 20.13 12.50 10.44 12.12 38.93 10.72 25.24 29.13 36.97 14.60 41.41 14.68 2.20 9.79 5.87 16 I1_AR4 ActiveIntronRegion 1 13.03 3.22 9.71 9.18 15.96 11.44 26.04 21.21 16.13 12.94 7.29 39.88 75.67 11.79 24.37 20.65 38.70 8.73 18.92 9.87 1.47 2.71 4.29 17 I1_SR3 SilentIntronRegion 0 19.05 5.68 9.32 13.53 11.17 11.34 21.63 22.45 15.43 13.73 9.51 43.33 54.73 14.28 26.37 25.84 44.27 6.29 32.77 8.58 3.49 3.66 3.37 18 E2_Aa NovelBoundary 1 17.56 5.85 6.95 12.32 3.57 0.00 20.93 8.95 12.79 3.71 0.00 41.56 33.11 21.66 15.95 23.75 26.09 7.67 4.71 9.33 3.15 0.00 4.35 19 ER2a ExonRegion 0 15.59 9.28 24.78 31.41 27.93 26.92 61.48 94.35 37.75 114.91 124.53 56.70 49.48 147.74 90.40 92.14 192.44 52.12 111.21 23.07 10.99 3.65 3.67 20 E2a_E3a KnownJunction 0 17.34 9.87 37.93 55.44 55.52 5.56 49.77 141.54 49.31 192.87 164.25 77.43 67.37 98.95 68.98 102.20 332.21 71.13 112.19 26.72 15.75 13.84 7.94 21 I2_AR2 ActiveIntronRegion 0 4.51 3.54 6.21 8.64 10.12 2.07 11.01 9.53 10.40 7.64 3.12 9.44 15.75 5.53 15.04 14.31 34.97 6.12 11.79 6.17 0.83 0.34 0.97 22 I2_AR4 ActiveIntronRegion 0 18.45 5.07 14.65 7.49 13.15 2.70 10.62 15.21 8.23 7.91 1.66 4.94 7.63 3.11 15.53 18.83 19.03 15.73 11.17 3.42 0.54 0.26 1.81 23 I2_SR4 SilentIntronRegion 0 8.83 4.40 7.21 4.56 11.05 3.75 8.72 12.30 4.77 8.30 2.81 18.61 9.79 2.66 14.20 12.78 23.54 8.44 11.31 3.16 0.74 0.00 2.08 24 I2_AR5 ActiveIntronRegion 0 3.90 6.21 8.45 6.46 23.80 5.02 14.28 28.84 7.48 6.82 3.05 14.13 8.15 8.46 22.45 21.90 35.61 7.39 1.84 4.26 2.78 0.22 3.55 25 I2_AR8 ActiveIntronRegion 0 11.70 1.36 4.32 5.19 8.02 3.32 13.89 10.80 9.29 6.03 3.32 10.66 19.01 3.85 15.96 16.63 18.19 10.02 9.26 5.88 0.63 0.20 1.68 26 ER3a ExonRegion 1 11.17 3.47 26.09 49.82 25.42 6.52 46.74 97.32 38.37 160.46 129.07 43.17 29.77 93.97 43.60 39.01 190.72 46.12 58.58 6.74 5.82 3.53 0.69 27 E3a_E4a KnownJunction 1 6.59 9.80 27.73 56.17 48.90 15.90 75.92 115.29 50.35 213.23 187.21 55.52 49.67 130.85 54.52 54.77 239.36 49.45 110.50 8.76 9.08 0.00 11.52 28 E3a_E5a NovelJunction 0 0.00 2.76 1.66 7.49 4.24 0.00 12.54 2.22 4.43 2.26 12.69 0.00 0.00 2.47 5.19 0.00 21.79 6.22 4.24 0.00 0.00 0.00 0.00 29 E4_Aa NovelBoundary 0 0.00 0.00 15.64 16.81 8.06 9.43 19.48 15.20 8.83 5.48 2.63 12.30 20.29 5.18 27.44 3.93 11.87 22.59 19.01 8.50 0.00 0.00 4.35 30 ER4a ExonRegion 0 13.92 13.79 36.64 57.93 40.14 36.68 80.54 127.38 65.36 208.63 226.47 87.12 57.69 272.99 121.46 157.93 343.47 71.58 171.84 14.60 10.96 4.77 3.46 31 E4_Da NovelBoundary 0 3.48 0.00 1.39 8.02 7.47 2.16 19.34 5.09 6.02 2.71 0.00 6.00 0.00 2.35 4.45 0.00 34.41 8.46 4.71 8.88 0.00 0.00 15.28 32 E4a_E5a KnownJunction 0 32.89 15.26 54.49 60.53 84.13 63.60 117.30 164.09 73.73 210.79 277.12 193.71 126.78 453.41 198.03 260.44 468.63 104.59 224.01 21.67 10.19 11.08 3.84 33 I4 Intron 0 6.41 4.06 5.05 10.81 6.64 3.12 13.98 8.86 6.46 6.57 7.98 11.27 12.50 11.64 12.97 15.05 28.91 19.11 15.05 7.60 2.85 1.05 2.22 34 I4_AR1 ActiveIntronRegion 0 9.02 4.02 5.29 12.22 6.70 3.06 11.05 7.58 6.87 5.03 7.64 13.18 13.19 11.65 15.94 15.40 29.73 19.57 15.81 8.50 2.42 1.74 2.97 35 I4_SR1 SilentIntronRegion 0 6.79 3.50 6.28 10.61 9.02 3.94 18.38 10.22 5.60 5.48 5.56 10.68 14.92 10.76 12.38 13.56 29.57 18.34 16.32 5.56 2.11 0.90 0.97 36 I4_AR2 ActiveIntronRegion 0 12.96 4.11 15.45 15.59 7.17 5.54 16.48 12.45 5.60 9.46 5.61 11.79 15.81 9.10 20.32 21.16 32.51 30.66 13.11 10.83 4.24 0.35 3.14 37 I4_SR2 SilentIntronRegion 0 5.52 4.21 4.20 10.37 6.02 2.81 13.33 8.60 6.64 6.99 8.75 11.04 11.62 11.98 12.21 15.06 28.43 18.67 14.69 7.78 3.05 1.00 2.35 38 E5_Aa NovelBoundary 0 11.41 8.09 16.14 36.39 4.07 19.02 18.68 21.85 18.75 10.34 9.37 11.85 25.32 14.42 38.20 26.75 31.60 38.80 18.54 2.68 2.84 0.00 0.00 39 ER5a ExonRegion 0 22.00 13.24 39.02 77.79 48.28 50.99 96.91 159.49 77.81 199.88 181.85 117.95 75.02 240.36 121.96 152.52 278.05 110.37 145.28 23.52 9.65 8.37 4.96 40 E5_Da NovelBoundary 0 12.89 11.18 5.94 16.22 7.72 12.44 17.62 34.05 19.85 19.10 21.37 18.46 6.33 44.85 35.11 27.94 67.60 36.77 16.28 14.83 3.15 2.45 3.93 41 E5a_E6a KnownJunction 0 28.75 5.79 27.05 63.89 49.15 40.77 72.43 173.33 58.25 187.79 229.16 86.13 60.71 273.47 150.69 80.15 266.20 75.86 247.25 14.76 5.50 18.98 8.02 42 E5a_E6b NovelJunction 0 0.00 0.00 2.57 5.29 0.00 13.91 0.00 7.39 4.98 1.67 7.00 0.00 13.47 17.01 4.45 12.13 13.00 7.09 13.18 5.62 2.84 0.00 0.00 43 I5 Intron 0 10.67 8.11 11.43 16.76 15.41 16.35 25.29 23.25 17.02 16.66 42.28 29.40 32.34 57.97 38.02 37.03 56.30 34.96 34.75 14.26 3.17 4.04 2.44 44 I5_SR1 SilentIntronRegion 0 10.69 8.13 11.45 16.79 15.44 16.38 25.35 23.30 17.06 16.69 42.37 29.47 32.40 58.10 38.10 37.11 56.42 35.04 34.82 14.29 3.18 4.05 2.44 45 E6_Aa NovelBoundary 0 13.41 15.85 4.67 18.88 24.11 2.73 14.62 20.25 11.43 22.62 44.38 24.76 15.10 67.69 18.67 54.43 50.12 35.07 27.01 17.00 5.50 3.06 0.00 46 ER6a ExonRegion 0 22.81 6.45 30.69 39.60 27.40 42.43 61.58 102.17 44.30 150.21 171.15 67.44 57.90 250.92 141.05 122.30 233.99 55.97 152.06 27.00 11.23 11.35 5.76 47 E6_Da KnownBoundary 0 9.93 0.00 14.58 14.52 7.47 16.30 18.90 17.09 23.12 21.11 19.74 6.30 13.64 40.50 13.35 15.64 12.72 31.34 21.93 18.09 2.35 0.00 4.35 48 E6a_E6b KnownJunction 1 31.78 16.77 29.48 54.11 48.30 31.91 97.38 113.28 38.57 151.82 166.83 25.51 61.20 212.26 123.62 108.01 197.10 65.41 120.00 10.80 5.81 10.47 3.76 49 ER6b ExonRegion 0 4.37 1.74 8.08 13.65 8.56 14.20 13.53 23.21 11.90 17.41 20.59 11.99 5.58 38.06 29.73 31.09 27.59 21.28 20.88 13.37 1.75 0.93 4.29 50 E6_Ab NovelBoundary 0 6.52 3.35 9.08 6.93 8.23 10.45 20.76 17.25 15.65 18.75 11.95 7.35 27.60 41.03 34.61 31.70 14.31 23.13 13.84 11.38 3.09 0.00 4.35 51 E6_Db NovelBoundary 0 25.56 8.88 29.69 42.49 27.67 55.71 80.51 72.66 44.18 106.13 109.08 65.12 65.42 225.56 192.72 58.62 159.33 88.46 81.51 26.27 7.72 10.41 7.68 52 ER6c ExonRegion 0 24.03 9.45 29.48 53.15 32.27 43.26 91.20 102.39 44.10 138.64 169.07 48.90 61.52 248.01 179.71 89.69 205.04 75.98 105.68 22.15 8.04 9.80 5.87 53 ER6d ExonRegion 0 18.12 5.95 26.71 39.28 9.79 34.82 55.58 84.09 38.22 115.33 103.23 25.59 25.01 152.28 127.07 54.70 149.61 50.32 77.81 22.74 7.41 5.60 1.75 54 E6c_E7a KnownJunction 0 10.96 0.00 0.00 8.82 0.00 21.69 24.02 23.17 12.24 11.52 21.69 5.40 6.49 51.68 28.56 20.42 40.86 11.15 7.34 2.81 0.00 2.69 0.00 55 E6c_E7b KnownJunction 0 18.60 11.58 16.20 38.26 32.60 86.20 103.25 60.58 29.77 86.52 65.70 12.15 26.78 17.54 22.87 35.38 72.84 55.84 20.80 11.63 5.44 0.00 8.02 56 I6_AR4 ActiveIntronRegion 0 2.12 0.00 0.00 1.36 2.68 0.00 3.97 7.65 2.82 6.06 1.93 4.33 4.69 8.35 20.72 8.49 16.50 18.48 3.19 6.38 2.83 2.08 0.00 57 ER7a ExonRegion 0 11.11 2.03 6.13 14.99 10.70 31.17 38.06 38.46 17.91 32.40 37.69 5.41 9.38 47.10 35.54 17.09 57.77 24.02 11.15 3.72 2.20 2.08 0.73 58 ER7b ExonRegion 0 32.03 6.25 36.44 72.19 46.22 46.91 109.78 156.16 60.00 188.58 221.18 51.69 50.73 235.33 177.42 106.94 273.50 111.62 167.17 32.48 14.66 9.76 7.37 59 E7a_E8a KnownJunction 0 32.23 23.88 51.62 88.40 52.97 44.07 89.21 177.40 63.57 195.47 257.33 104.13 105.51 329.16 215.47 154.32 252.36 99.07 212.43 42.31 17.24 18.68 4.35 60 I7 Intron 0 4.64 1.74 6.52 3.29 2.93 4.45 7.50 6.75 6.22 3.99 7.55 7.16 6.65 25.82 23.24 14.86 33.17 15.78 9.56 7.60 1.57 1.79 1.40 61 I7_SR1 SilentIntronRegion 0 4.67 1.76 6.63 3.34 2.98 4.53 7.62 6.85 6.32 4.05 7.67 7.20 6.75 26.20 23.52 15.08 33.70 16.04 9.71 7.72 1.59 1.81 1.42 62 E8_Aa NovelBoundary 0 10.00 0.00 13.39 5.06 0.00 2.61 3.44 18.15 6.51 11.31 4.53 0.00 12.66 29.31 19.28 15.30 52.17 19.19 14.40 8.69 0.00 3.12 8.71 63 ER8a ExonRegion 0 46.92 19.76 56.88 76.87 70.16 52.26 106.20 182.22 64.00 171.66 181.10 90.62 81.23 286.29 268.17 155.24 241.63 89.62 166.00 30.07 14.76 9.82 8.59 64 ER8b ExonRegion 0 7.41 1.53 0.00 2.73 2.68 10.09 4.96 0.43 0.31 0.00 3.87 3.25 4.69 6.50 18.86 3.72 6.60 0.46 5.57 0.00 0.00 0.00 2.94 65 IG38 Intergenic 0 20.89 4.49 8.28 13.09 7.12 12.63 8.05 15.18 12.29 14.74 0.46 1.98 0.47 1.44 3.01 2.35 2.41 20.91 26.89 13.94 8.55 1.15 2.71 66 IG38_AR1 ActiveIntergenicRegion 0 18.13 8.07 12.49 21.56 9.87 19.36 12.50 24.92 24.59 19.91 0.77 1.69 1.39 2.10 4.53 3.21 5.07 20.60 43.01 17.36 14.31 2.20 4.77 67 IG38_SR2 SilentIntergenicRegion 0 81.62 6.41 16.77 23.29 11.52 11.10 8.87 28.41 34.74 19.68 0.88 1.35 0.00 2.74 10.02 4.96 3.83 29.17 37.09 21.09 16.69 0.95 4.22 68 IG38_AR2 ActiveIntergenicRegion 0 89.68 7.66 14.88 25.76 11.32 17.93 11.39 28.69 23.19 17.89 0.83 3.67 0.48 2.72 4.58 4.20 2.68 30.47 31.52 16.73 11.89 1.87 3.31 69 IG38_SR3 SilentIntergenicRegion 0 11.09 3.59 7.33 11.94 5.17 13.56 7.73 12.47 10.80 16.63 0.50 2.45 0.22 1.25 2.88 2.38 2.29 24.81 28.39 16.05 9.49 0.96 3.26 70 IG38_AR3 ActiveIntergenicRegion 0 9.11 3.31 10.54 13.14 5.29 11.11 9.34 14.73 7.05 16.72 0.26 0.85 0.00 1.27 2.09 0.80 0.12 22.66 24.61 13.35 8.97 1.41 1.77 71 IG38_SR4 SilentIntergenicRegion 0 11.27 5.17 10.37 14.40 10.49 23.01 9.23 22.84 11.74 29.29 0.31 1.14 1.24 1.90 4.42 2.86 4.62 22.35 36.17 15.94 6.66 2.00 0.47 72 IG38_AR5 ActiveIntergenicRegion 0 11.62 3.97 5.37 6.91 7.97 5.76 5.43 9.74 5.73 6.34 0.00 0.98 0.56 1.21 1.56 1.44 1.28 11.21 19.41 8.85 3.36 0.76 0.86 73 IG38_SR6 SilentIntergenicRegion 0 12.80 1.30 2.31 2.85 6.98 1.89 4.90 6.87 2.61 2.15 0.40 0.00 0.00 0.33 1.33 0.64 0.00 4.38 5.54 4.61 2.29 0.85 1.67 74 IG38_AR6 ActiveIntergenicRegion 0 16.66 16.38 13.52 14.39 23.41 16.70 12.74 19.32 19.83 7.30 2.08 1.91 0.00 1.59 3.27 1.50 3.54 25.54 23.10 19.87 7.01 0.00 5.07