Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 WDR73 Gene 0 121.40 125.51 102.41 144.06 100.35 111.56 97.25 110.17 99.69 136.98 51.37 62.20 47.38 95.15 134.97 139.94 76.59 172.14 210.97 105.03 115.16 90.26 96.50 2 419751 Transcript 0 119.46 58.76 69.57 63.31 49.85 62.14 44.24 36.18 50.31 71.78 13.29 14.51 12.69 37.20 39.88 56.06 22.51 122.24 108.62 58.56 51.19 34.28 40.46 3 323189 Transcript 0 0.00 0.00 56.86 112.07 0.00 0.00 0.00 61.98 57.00 89.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 94.14 0.00 0.00 0.00 0.00 0.00 4 434634 Transcript 0 39.80 8.70 35.70 58.90 21.24 43.13 16.59 52.05 48.89 65.92 28.51 56.22 27.72 15.03 26.25 31.13 43.01 23.65 53.20 33.57 58.33 37.89 30.01 5 398528 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 ER1a ExonRegion 0 175.37 125.65 15.97 22.60 103.93 73.16 130.05 38.66 7.43 26.72 13.33 0.84 0.00 64.25 89.18 216.70 80.15 84.51 310.82 28.78 92.48 95.55 139.77 7 E1_Da NovelBoundary 0 140.02 69.79 12.18 17.71 44.48 39.41 127.67 18.65 7.47 11.90 22.27 0.00 6.17 18.78 30.53 106.21 44.97 116.48 155.58 17.26 86.30 40.29 143.07 8 E1a_E2a KnownJunction 0 437.34 293.11 59.40 80.28 211.29 149.23 310.38 106.22 20.14 88.81 36.69 6.30 0.00 74.58 134.50 449.45 158.86 244.28 705.06 68.90 194.17 215.85 336.84 9 I1 Intron 0 6.26 14.71 7.51 9.02 4.84 19.30 5.01 11.01 14.54 13.50 2.86 0.59 2.68 7.84 9.38 14.18 8.69 31.60 55.55 16.45 11.60 7.88 28.99 10 I1_AR1 ActiveIntronRegion 0 6.29 14.80 7.56 9.08 4.87 19.43 5.04 11.08 14.63 13.58 2.88 0.59 2.70 7.89 9.44 14.27 8.75 31.80 55.91 16.56 11.68 7.93 29.16 11 E2_Aa NovelBoundary 0 25.26 18.94 30.99 61.30 42.78 53.04 17.36 66.95 40.48 71.16 5.05 6.30 21.59 7.42 33.99 49.13 12.25 45.02 127.25 65.00 22.43 25.96 41.66 12 ER2a ExonRegion 0 90.14 60.50 34.47 47.58 51.82 48.00 62.03 70.10 37.13 57.55 21.35 20.69 26.14 36.78 40.96 133.22 49.76 92.96 197.73 46.50 65.30 69.98 91.73 13 E2a_E3a KnownJunction 1 44.67 10.79 31.58 57.83 22.41 47.76 14.31 50.52 45.60 61.30 21.74 64.82 26.13 17.07 23.49 29.56 38.15 20.98 34.73 23.52 44.48 34.11 26.97 14 E2b_E3b KnownJunction 0 2.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.49 0.00 0.00 0.00 0.00 0.00 7.44 7.48 7.60 0.00 6.66 15 ER2b ExonRegion 0 0.71 0.68 0.00 0.91 0.00 0.00 2.21 0.00 1.65 0.38 4.51 0.00 4.69 0.54 0.97 0.00 0.00 0.62 2.12 2.84 5.14 0.00 1.96 16 I2_AR1 ActiveIntronRegion 0 3.70 14.85 10.75 7.52 8.89 11.06 8.13 9.36 10.64 14.16 2.22 2.16 3.18 6.03 9.66 16.30 10.86 30.00 61.14 23.78 7.25 7.56 16.10 17 ER3a ExonRegion 0 34.92 6.61 39.82 59.97 20.07 38.51 18.87 53.58 52.18 70.53 35.28 47.62 29.31 12.99 29.01 32.69 47.86 26.33 71.67 43.62 72.17 41.67 33.04 18 ER3b ExonRegion 0 42.11 57.13 77.79 130.50 41.84 72.49 33.49 116.95 111.25 129.87 125.00 105.49 43.37 102.93 103.80 268.79 183.26 187.45 437.67 115.52 192.73 141.75 203.53 19 E3a_E4a KnownJunction 1 50.97 99.00 118.27 188.35 62.05 109.94 62.18 227.96 161.63 172.43 48.17 141.95 60.87 229.74 232.90 1224.81 112.76 465.56 1416.79 140.62 94.89 296.31 814.19 20 E3a_E5a NovelJunction 0 0.00 0.00 0.00 3.53 0.00 0.00 0.00 0.00 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.95 0.00 3.15 8.39 0.00 21 I3 Intron 0 13.39 13.75 12.52 20.01 20.93 20.37 14.39 16.17 14.22 16.84 0.84 2.53 3.06 1.56 3.75 6.03 4.30 25.68 16.15 12.54 4.47 3.42 5.25 22 I3_SR1 SilentIntronRegion 0 13.42 13.78 12.55 20.05 20.97 20.41 14.41 16.20 14.25 16.87 0.84 2.53 3.07 1.56 3.76 6.04 4.31 25.73 16.18 12.56 4.48 3.43 5.26 23 E4_Aa NovelBoundary 0 7.26 13.35 12.83 26.70 54.50 53.72 48.76 26.57 25.20 33.31 2.16 0.00 0.00 0.00 5.93 4.02 4.30 75.28 7.91 20.90 5.68 9.06 17.16 24 ER4a ExonRegion 1 37.79 75.24 82.53 127.13 130.78 113.92 96.78 126.95 103.03 116.46 63.46 99.82 40.68 97.17 115.95 417.10 73.47 268.88 512.56 89.15 105.33 132.17 265.52 25 E4_Da NovelBoundary 0 23.71 26.84 51.95 65.99 97.45 64.62 92.52 53.89 47.63 70.67 7.16 6.30 6.66 39.73 23.36 75.79 36.56 79.63 113.13 45.51 57.70 47.76 28.43 26 E4a_E5a KnownJunction 1 6.89 52.82 57.48 79.91 80.56 114.08 195.82 58.69 77.63 75.48 53.12 99.03 12.66 57.63 67.37 45.80 68.26 86.51 101.65 49.73 52.63 58.05 41.49 27 I4 Intron 0 47.00 32.72 22.51 47.97 33.99 39.34 30.15 34.42 30.65 46.32 8.55 20.69 16.80 37.68 30.17 48.10 27.33 72.50 78.23 45.85 41.45 33.52 33.16 28 I4_AR1 ActiveIntronRegion 0 47.17 32.84 22.59 48.15 34.11 39.48 30.26 34.54 30.77 46.48 8.58 20.76 16.86 37.82 30.28 48.26 27.43 72.77 78.51 46.02 41.60 33.64 33.28 29 E5_Aa NovelBoundary 0 27.49 34.20 50.09 62.00 56.45 98.86 61.21 33.76 45.25 58.59 19.90 5.85 40.58 35.55 24.72 41.36 17.20 95.55 47.44 75.74 43.43 17.39 57.19 30 ER5a ExonRegion 0 28.46 129.02 59.35 72.61 66.15 116.97 179.79 62.44 65.56 79.72 53.91 79.46 34.71 68.54 84.76 70.83 63.58 68.99 110.02 52.08 101.78 62.28 37.36 31 E5_Da NovelBoundary 1 49.93 37.23 53.04 63.43 27.84 52.87 53.17 36.97 51.53 69.38 11.58 0.00 47.24 16.95 51.67 27.69 27.40 94.43 125.93 65.45 62.15 62.64 82.29 32 E5a_E6a KnownJunction 1 83.57 186.61 74.13 95.56 21.22 50.65 31.58 84.00 63.48 93.08 43.43 79.53 14.45 68.10 73.31 78.18 46.66 76.77 158.22 26.65 112.19 45.50 42.94 33 I5 Intron 0 84.17 68.30 62.02 85.83 74.32 64.07 76.43 64.84 68.01 86.43 16.78 40.37 36.24 29.37 41.67 35.31 25.25 77.89 100.24 71.23 56.53 64.99 54.49 34 I5_AR1 ActiveIntronRegion 0 84.34 68.44 62.15 86.01 74.48 64.21 76.59 64.97 68.15 86.61 16.81 40.46 36.32 29.42 41.76 35.39 25.31 78.05 100.45 71.37 56.64 65.13 54.61 35 E6_Aa NovelBoundary 1 152.92 128.60 94.70 133.42 101.44 142.82 115.26 93.07 71.70 129.90 16.85 62.72 44.80 33.96 108.29 67.50 35.62 151.93 152.95 111.54 91.55 107.04 76.83 36 ER6a ExonRegion 0 130.93 105.81 124.56 155.37 68.32 100.61 84.36 109.82 114.81 159.39 50.33 91.94 38.43 103.69 126.28 115.03 83.00 223.96 210.43 117.60 139.51 83.00 86.39 37 E6_Da KnownBoundary 1 98.31 71.76 149.11 137.71 54.67 106.42 74.11 75.99 95.77 145.05 16.64 23.56 0.00 22.66 49.94 53.83 8.04 267.00 56.85 84.82 42.75 34.41 42.43 38 E6a_E7a KnownJunction 0 42.97 11.91 37.28 66.56 15.28 20.10 20.62 28.34 41.35 46.50 27.53 0.00 12.66 28.96 79.73 60.92 32.63 89.87 78.03 23.84 69.68 32.58 37.65 39 E6a_E8a NovelJunction 0 0.00 5.79 9.11 1.96 0.00 2.10 1.85 2.46 6.13 1.02 0.00 6.30 0.00 0.00 0.00 0.00 0.00 13.14 12.99 2.62 0.00 0.00 0.00 40 ER6b ExonRegion 0 119.46 58.76 69.57 63.31 49.85 62.14 44.24 36.18 50.31 71.78 13.29 14.51 12.69 37.20 39.88 56.06 22.51 122.24 108.62 58.56 51.19 34.28 40.46 41 E6_Db NovelBoundary 0 181.07 89.06 111.97 122.79 85.74 140.43 86.82 83.42 74.42 129.98 46.38 18.01 14.77 39.67 37.46 85.36 39.27 219.62 184.10 115.31 69.44 62.64 69.57 42 I6 Intron 0 48.37 36.84 61.58 75.26 32.81 46.51 31.36 55.27 48.74 76.20 12.39 14.55 14.07 32.16 33.91 36.43 22.08 113.64 86.11 53.37 46.66 27.87 29.46 43 I6_AR1 ActiveIntronRegion 0 48.63 37.04 61.91 75.68 32.99 46.76 31.54 55.58 49.00 76.62 12.46 14.63 14.15 32.34 34.10 36.63 22.20 114.27 86.58 53.66 46.92 28.02 29.62 44 E7_Aa NovelBoundary 0 51.27 37.43 92.84 86.90 72.50 80.92 42.35 92.29 80.82 110.56 9.53 25.81 0.00 46.09 42.90 64.00 20.20 103.80 83.77 65.39 40.03 37.84 39.01 45 ER7a ExonRegion 0 101.44 80.22 110.14 131.45 78.05 121.72 69.33 103.90 102.50 136.44 51.50 27.56 19.31 106.49 144.00 142.52 77.56 218.78 169.41 112.57 138.57 83.37 93.13 46 E7_Da NovelBoundary 0 53.71 46.37 89.83 90.33 34.97 54.23 25.92 63.30 75.81 80.08 4.84 5.70 0.00 7.42 13.35 21.70 3.65 147.91 53.65 27.80 21.68 28.60 37.65 47 E7a_E8a KnownJunction 0 83.42 51.04 125.37 151.20 80.81 132.82 46.64 141.01 82.23 129.85 66.60 18.16 39.45 138.80 232.03 128.94 74.89 182.77 208.95 100.41 156.98 77.22 128.73 48 I7 Intron 0 41.43 42.34 38.45 38.96 31.09 37.47 23.54 27.32 24.83 36.39 5.43 7.02 7.96 7.06 9.89 12.52 9.27 56.01 33.53 25.88 14.26 11.05 14.19 49 I7_AR1 ActiveIntronRegion 0 43.37 44.66 43.96 42.61 32.76 39.48 24.13 29.85 26.77 40.50 5.97 6.74 9.19 7.69 10.24 14.65 10.24 63.74 36.14 26.55 14.73 11.92 14.99 50 I7_SR1 SilentIntronRegion 0 32.32 31.34 11.07 21.09 23.16 27.92 20.96 14.89 15.41 16.13 2.75 8.54 1.84 3.98 8.27 1.89 4.47 17.68 20.87 22.99 12.13 6.82 10.37 51 E8_Aa NovelBoundary 0 95.28 125.90 90.03 107.91 52.55 37.65 52.02 84.49 69.91 86.82 2.47 18.01 6.01 16.48 4.45 39.14 8.98 74.41 141.65 42.70 17.79 13.66 28.51 52 ER8a ExonRegion 0 134.07 99.46 122.05 205.75 119.38 153.31 87.87 154.48 133.41 192.51 78.76 64.74 34.14 156.63 235.11 194.04 108.72 219.87 230.17 158.07 189.94 83.46 111.28 53 E8_Da KnownBoundary 0 146.40 109.45 87.49 119.27 103.48 164.79 53.48 69.42 78.33 107.77 72.91 37.66 28.57 73.52 88.39 133.73 68.44 166.68 173.37 112.05 138.88 66.93 78.88 54 E8a_E8b KnownJunction 0 0.00 0.00 56.86 112.07 0.00 0.00 0.00 61.98 57.00 89.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 94.14 0.00 0.00 0.00 0.00 0.00 55 E8_Ab KnownBoundary 0 86.98 75.64 46.12 65.49 87.01 86.94 78.74 58.28 25.14 64.01 42.91 0.00 13.64 35.43 107.42 68.36 38.43 60.52 124.62 67.18 70.36 45.62 72.56 56 ER8b ExonRegion 0 186.96 147.43 143.57 215.56 165.45 198.05 117.17 146.92 147.80 204.15 113.40 80.10 47.68 158.89 306.57 206.07 132.59 285.17 300.49 175.18 214.13 105.22 133.62 57 ER8c ExonRegion 0 118.68 130.00 114.59 193.13 133.98 169.92 121.35 134.74 116.88 179.84 69.16 67.79 36.49 127.08 264.01 156.29 99.91 216.55 197.73 138.04 162.05 82.27 130.07 58 E8_Db KnownBoundary 0 117.72 161.88 93.43 177.00 180.56 169.05 156.20 130.00 110.68 143.01 36.48 93.93 33.28 151.45 257.99 147.91 89.57 170.75 185.13 128.79 151.05 91.48 124.89 59 ER8d ExonRegion 1 155.88 200.17 115.95 170.12 133.11 113.46 129.37 122.47 106.52 148.69 42.44 79.02 86.39 83.80 130.73 87.30 61.89 134.09 180.75 104.10 77.76 101.87 70.27