Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SCAND2 Gene 0 47.76 54.13 42.94 49.58 43.98 42.19 44.51 44.21 39.63 50.66 8.30 16.06 12.56 13.37 19.92 22.24 11.81 65.83 69.99 37.10 20.35 27.48 29.75 2 318093 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 348993 Transcript 0 37.49 40.19 31.12 42.15 32.35 34.38 37.81 38.74 30.53 42.88 8.92 8.96 6.93 10.12 17.69 19.19 9.23 56.63 54.60 25.91 13.93 21.18 23.28 4 427525 Transcript 0 29.05 24.06 14.84 14.54 16.57 8.25 15.22 15.45 7.78 11.77 0.96 6.11 5.56 2.90 4.01 3.74 1.57 11.81 18.08 9.38 2.72 7.70 7.28 5 IG41 Intergenic 0 8.35 18.67 16.51 18.61 12.63 12.08 10.43 14.31 17.79 15.98 0.56 1.07 1.60 0.49 0.85 2.30 1.40 26.40 16.48 13.04 1.97 2.91 4.41 6 IG41_SR2 SilentIntergenicRegion 0 10.59 22.06 24.13 27.45 15.08 16.05 13.25 21.30 24.38 23.71 0.87 1.04 2.68 0.64 1.28 2.58 2.27 36.64 23.29 18.04 2.71 3.31 4.84 7 IG41_AR3 ActiveIntergenicRegion 0 7.54 17.38 6.50 12.15 9.92 7.84 10.18 10.64 13.90 8.52 0.55 0.51 1.22 0.00 0.00 2.54 0.47 16.10 7.26 10.91 0.31 1.78 2.51 8 IG41_SR4 SilentIntergenicRegion 0 6.49 18.42 13.05 10.70 11.76 8.45 7.12 7.74 11.60 9.89 0.14 2.09 0.28 0.38 0.84 2.18 0.48 18.92 12.46 7.81 1.76 2.67 6.89 9 IG41_AR4 ActiveIntergenicRegion 0 8.96 11.05 8.18 2.85 5.90 11.18 2.43 5.95 10.56 9.00 0.00 1.78 0.00 0.13 1.02 2.13 0.00 36.54 8.31 6.90 1.92 9.95 0.00 10 IG41_SR5 SilentIntergenicRegion 0 6.19 11.30 6.49 3.48 7.63 11.95 5.54 1.86 13.45 6.58 0.00 0.00 0.00 1.62 0.00 5.94 0.00 26.28 2.48 1.65 1.39 3.16 0.00 11 ER1a ExonRegion 0 8.91 2.14 5.09 0.86 0.99 5.31 2.72 4.00 6.44 4.83 2.14 0.00 0.00 0.09 3.51 7.51 5.73 5.25 4.19 4.37 7.42 2.74 4.95 12 ER1b ExonRegion 0 27.94 22.91 20.95 34.58 22.01 31.46 17.98 38.33 47.63 47.96 7.24 5.16 2.20 6.43 11.21 19.46 9.91 62.60 28.32 27.79 27.01 14.02 20.38 13 E1a_E2a KnownJunction 0 7.19 2.83 7.92 10.99 7.13 10.45 8.61 14.17 8.97 19.96 2.42 0.00 0.00 2.88 0.00 0.00 3.55 29.60 13.55 9.01 14.52 0.00 0.00 14 E1a_E3b KnownJunction 0 3.11 5.66 2.81 10.75 0.00 0.00 9.14 4.48 1.77 9.19 0.00 0.00 0.00 2.47 0.00 8.29 0.00 8.58 12.33 3.26 7.97 5.69 0.00 15 E2_Aa NovelBoundary 0 0.00 6.12 5.50 3.43 4.24 29.64 4.02 10.23 16.35 17.86 7.37 0.00 5.68 11.95 0.00 3.85 8.60 52.52 3.86 12.66 17.30 14.51 22.71 16 ER2a ExonRegion 0 4.95 7.03 7.37 8.01 4.35 8.70 8.52 11.93 13.92 16.75 1.54 1.44 2.58 4.09 3.30 5.13 3.92 18.28 6.53 15.94 7.52 3.37 3.92 17 E2_Da KnownBoundary 0 24.00 30.59 23.18 39.92 20.88 24.30 24.82 31.38 41.41 31.89 5.16 18.91 6.17 14.60 11.99 15.04 0.00 38.51 18.45 22.82 11.43 5.33 23.47 18 ER2b ExonRegion 0 9.87 8.54 5.73 11.19 11.03 7.67 9.19 9.30 7.40 7.60 1.21 4.67 4.40 1.60 1.16 2.44 2.82 3.52 4.24 4.05 0.84 3.40 3.95 19 E2_Db NovelBoundary 0 87.27 48.87 48.67 41.72 40.41 46.00 63.33 62.43 59.87 40.91 9.69 0.00 27.60 10.07 0.00 50.33 17.95 30.76 59.86 56.69 25.76 30.86 39.18 20 E2b_E3a KnownJunction 0 0.00 0.00 0.00 1.60 0.00 0.00 0.00 0.00 0.00 1.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.03 0.00 0.00 0.00 0.00 0.00 21 I2_AR2 ActiveIntronRegion 0 11.20 3.81 0.00 4.15 3.90 0.00 14.01 0.00 4.89 4.16 1.45 3.79 2.15 0.00 7.98 4.58 3.30 6.62 17.12 3.55 1.65 2.86 0.00 22 I2_AR3 ActiveIntronRegion 0 12.89 3.57 2.62 7.76 15.56 4.96 9.94 4.44 7.28 7.11 0.61 1.23 5.93 2.01 2.87 8.22 0.55 12.77 17.99 2.82 4.60 3.41 8.52 23 I2_AR4 ActiveIntronRegion 0 16.93 8.13 6.13 7.50 33.89 5.50 7.94 6.91 9.88 9.18 0.00 4.33 0.78 0.00 0.00 4.95 0.00 3.70 25.48 4.26 4.41 4.17 8.81 24 I2_AR5 ActiveIntronRegion 0 19.72 9.61 7.35 8.55 36.73 5.50 8.00 7.15 10.50 11.68 0.00 3.54 0.00 1.03 4.48 1.89 1.65 5.46 29.39 3.97 4.11 3.31 8.68 25 I2_AR6 ActiveIntronRegion 0 7.41 7.68 6.67 11.51 43.70 7.44 7.43 7.11 9.19 10.26 0.00 0.00 0.00 3.25 10.80 3.80 3.30 6.16 26.01 3.43 4.90 5.44 2.94 26 I2_AR7 ActiveIntronRegion 0 16.31 8.79 9.59 9.77 21.03 10.80 12.83 6.25 5.39 6.98 0.00 3.26 0.00 0.99 5.51 4.35 1.03 9.75 13.96 6.56 3.66 6.54 8.58 27 E3_Aa NovelBoundary 0 5477.86 5841.66 7573.27 8743.51 4804.59 4549.43 6928.16 8113.97 7820.78 7097.57 2376.44 1253.51 1622.46 1296.55 2924.17 7827.52 5037.02 10617.16 5826.71 5807.71 3275.68 2865.79 6334.54 28 ER3a ExonRegion 0 13.02 5.77 2.85 2.11 8.89 2.01 3.91 3.30 3.53 3.24 0.28 1.90 4.83 2.54 3.72 4.25 0.84 6.60 7.91 1.87 2.29 2.51 6.09 29 E3_Ab KnownBoundary 0 3.78 15.92 1.39 0.00 8.15 2.38 1.99 0.00 1.79 1.67 5.37 5.70 0.00 0.00 0.00 3.93 0.00 9.41 8.47 3.26 0.00 2.88 3.50 30 ER3b ExonRegion 0 18.87 21.78 11.87 18.03 19.54 16.33 12.66 15.46 18.49 18.95 4.87 10.20 2.25 4.18 7.43 5.66 8.50 41.11 26.18 11.43 18.11 7.25 19.87 31 E3a_E4a KnownJunction 0 29.78 43.68 13.84 26.17 27.76 17.38 6.40 30.23 32.32 26.51 5.32 0.00 0.00 5.12 0.00 7.86 4.11 41.20 26.17 14.57 25.33 14.08 3.41 32 I3 Intron 0 45.86 43.30 33.44 33.27 32.87 19.39 29.58 29.92 12.89 21.63 4.32 7.28 6.10 3.86 5.76 3.54 3.44 28.26 50.04 17.11 7.71 15.52 9.84 33 I3_SR1 SilentIntronRegion 0 35.25 40.35 34.42 34.38 31.42 19.00 28.66 31.32 13.33 22.62 4.09 6.95 6.09 3.94 5.38 3.48 3.53 28.83 48.79 17.43 7.82 14.01 9.52 34 I3_AR1 ActiveIntronRegion 0 214.08 91.56 19.79 17.42 57.23 26.34 45.31 9.32 6.51 7.16 8.11 12.88 6.52 2.89 11.89 4.71 2.17 20.69 72.02 12.92 6.34 39.89 15.33 35 E4_Aa NovelBoundary 0 80.61 176.55 121.17 82.61 42.44 15.62 47.43 74.14 57.44 80.96 5.21 7.65 6.82 4.94 8.90 12.30 9.07 53.47 57.60 34.58 16.12 26.76 10.84 36 ER4a ExonRegion 0 98.91 97.51 67.49 71.27 53.48 46.83 48.36 70.61 45.62 58.93 11.20 11.62 18.70 11.57 17.48 18.20 8.25 68.12 66.12 50.08 28.97 34.68 32.80 37 E4_Da KnownBoundary 0 83.20 74.79 75.66 57.93 38.03 30.78 42.48 41.69 29.43 36.64 4.11 6.30 6.82 7.42 15.20 3.59 0.00 35.07 51.48 41.93 17.79 16.04 4.18 38 E4a_E5a KnownJunction 0 39.71 28.15 19.78 35.89 25.30 33.11 29.94 45.18 30.15 39.89 12.90 0.00 0.00 4.65 18.05 12.05 8.32 53.81 27.39 15.28 2.90 11.02 19.97 39 ER4b ExonRegion 0 93.33 81.93 50.77 43.25 46.37 23.33 47.80 49.22 20.18 34.98 2.36 17.88 13.00 7.44 11.16 8.28 2.62 35.09 60.18 31.61 7.77 24.88 19.07 40 E4_Db NovelBoundary 0 346.14 223.12 83.41 112.67 248.64 120.16 316.38 127.58 108.22 104.52 85.23 166.25 124.99 153.22 154.65 149.19 151.75 119.39 178.26 181.08 110.46 79.85 169.79 41 I4 Intron 0 20.76 25.36 19.44 22.48 21.37 7.71 20.03 16.24 11.87 20.59 2.71 8.21 7.92 2.53 6.15 2.08 5.09 8.63 29.90 19.68 2.47 14.89 6.58 42 I4_SR1 SilentIntronRegion 0 16.53 17.63 16.87 29.60 14.75 2.04 15.00 21.29 13.30 26.90 3.36 12.33 7.75 3.57 1.49 1.92 5.89 7.67 24.50 19.77 3.49 13.61 7.03 43 I4_AR1 ActiveIntronRegion 0 24.12 31.44 21.52 17.11 26.56 12.11 24.01 12.43 10.81 15.83 2.21 5.07 8.10 1.74 9.77 2.22 4.49 9.41 34.22 19.71 1.70 15.93 6.26 44 E5_Aa NovelBoundary 0 73.86 84.00 89.29 114.94 56.88 16.47 35.73 115.95 35.50 70.75 7.05 0.00 0.00 11.95 8.90 0.00 3.83 52.23 114.07 63.60 9.39 19.96 24.07 45 ER5a ExonRegion 0 69.66 86.76 70.78 79.79 71.75 70.02 74.33 66.55 59.69 79.57 13.86 26.89 20.79 23.22 35.03 37.22 19.37 107.49 124.08 59.20 30.92 46.81 49.88