Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 KIF7 Gene 0 9.63 12.57 49.74 32.87 7.32 19.09 21.79 9.47 18.35 37.66 8.71 3.81 1.76 5.03 6.43 4.23 17.77 67.15 34.79 26.26 53.96 40.07 55.38 2 445906 Transcript 0 0.99 2.38 8.27 7.27 0.53 2.86 3.23 0.53 1.73 5.76 0.16 1.87 0.00 0.00 1.06 0.00 0.83 9.50 5.34 6.39 10.76 9.70 10.45 3 394412 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 300053 Transcript 0 1.21 5.52 0.88 1.36 1.53 1.57 3.03 0.49 0.00 1.31 5.52 0.00 2.68 0.00 0.00 8.49 2.36 2.11 0.00 0.91 0.63 0.30 4.20 5 ER1a ExonRegion 0 7.91 13.54 12.51 7.20 7.88 49.10 34.32 0.00 6.69 11.53 3.54 0.00 0.00 0.00 7.01 0.00 15.76 49.71 50.42 10.64 42.08 40.73 66.38 6 E1a_E2a KnownJunction 0 3.11 10.92 37.14 20.18 7.72 37.82 44.12 0.00 18.23 24.79 0.00 0.00 0.00 0.00 4.45 0.00 8.42 91.65 53.08 8.18 59.18 46.41 97.74 7 ER2a ExonRegion 0 0.90 4.11 26.12 14.34 2.30 15.92 12.82 4.02 13.47 23.82 4.29 0.55 0.00 0.00 6.53 0.00 11.19 39.64 27.08 16.57 53.44 24.64 41.19 8 E2_Da NovelBoundary 0 3.78 5.85 18.98 9.32 0.00 2.90 13.65 2.46 10.94 10.80 0.00 0.00 0.00 0.00 0.00 0.00 4.39 25.87 12.99 8.95 16.80 7.65 4.01 9 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.69 0.00 10 E2a_E3b KnownJunction 0 6.30 8.35 19.51 12.05 0.00 4.66 19.96 6.45 12.01 29.60 4.84 0.00 0.00 0.00 4.45 0.00 20.57 30.22 17.13 16.87 61.28 49.97 37.99 11 I2 Intron 0 1.51 3.55 13.18 10.63 3.40 3.64 7.35 1.23 5.26 11.79 2.30 0.00 0.00 0.21 2.08 0.24 2.36 22.51 22.49 13.67 15.03 11.73 20.73 12 I2_SR1 SilentIntronRegion 0 1.52 3.56 13.22 10.66 3.41 3.65 7.37 1.23 5.27 11.83 2.31 0.00 0.00 0.21 2.09 0.24 2.36 22.57 22.56 13.72 15.08 11.77 20.79 13 E3_Aa NovelBoundary 0 8.82 6.12 39.32 30.20 0.00 14.48 16.38 1.68 9.61 9.40 0.00 0.00 0.00 2.12 0.00 0.00 8.23 46.22 40.10 17.90 31.94 15.92 22.54 14 ER3a ExonRegion 0 1.97 4.75 16.53 14.53 1.05 5.71 6.47 1.06 3.47 11.51 0.32 3.75 0.00 0.00 2.12 0.00 1.65 18.99 10.69 12.79 21.53 16.71 20.90 15 E3_Ab KnownBoundary 0 2.89 3.16 33.56 26.17 3.57 2.50 10.11 1.85 7.84 13.27 2.42 0.00 0.00 0.00 0.00 0.00 3.93 39.96 8.00 22.37 39.66 16.66 27.15 16 ER3b ExonRegion 0 5.64 8.07 72.15 39.35 6.96 14.24 16.17 5.38 27.48 52.11 6.71 3.51 2.95 0.77 7.31 0.00 15.78 85.69 39.63 32.97 80.88 52.14 52.58 17 E3a_E4a KnownJunction 0 6.96 2.96 80.66 41.89 0.00 6.47 20.01 11.01 34.35 41.42 5.26 0.00 0.00 2.41 0.00 0.00 20.01 91.32 48.47 45.38 52.33 45.56 63.08 18 ER4a ExonRegion 0 2.80 4.42 42.58 24.58 1.04 13.87 7.99 8.93 12.36 34.65 2.46 3.23 1.43 1.04 4.82 0.37 10.67 53.34 35.32 22.04 44.72 33.04 38.39 19 E4a_E5a KnownJunction 0 3.78 0.00 46.80 24.47 0.00 2.78 1.85 10.51 11.98 29.87 0.00 0.00 0.00 2.47 5.19 0.00 0.00 52.81 30.21 22.63 53.31 24.00 43.88 20 ER5a ExonRegion 0 0.63 1.14 26.57 7.43 0.50 3.45 3.90 3.58 9.81 16.60 1.45 1.34 0.62 1.45 3.68 0.58 7.37 30.66 19.72 13.16 32.10 19.72 30.54 21 E5_Da KnownBoundary 0 0.00 0.00 1.74 0.00 0.00 0.00 0.00 0.00 0.00 2.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.68 12.89 0.00 9.39 3.06 4.35 22 ER5b ExonRegion 0 1.31 2.09 6.27 2.51 0.13 2.85 4.25 3.67 4.63 6.03 1.01 0.00 0.00 0.00 0.87 0.61 2.87 22.19 7.28 6.83 14.82 5.26 21.55 23 E5b_E6a KnownJunction 0 0.00 0.00 23.39 3.16 3.65 2.90 0.00 6.90 5.96 6.80 2.58 0.00 0.00 0.00 0.00 0.00 7.85 40.04 14.02 10.80 33.55 18.00 39.86 24 ER6a ExonRegion 0 2.95 2.92 20.96 13.82 5.08 7.59 7.34 8.94 15.07 12.84 5.17 0.00 0.00 0.43 4.07 0.00 11.03 48.59 17.61 20.39 44.55 29.03 46.13 25 E6a_E7a KnownJunction 0 10.82 2.70 31.90 19.44 12.99 13.46 20.71 9.32 10.94 17.57 2.53 0.00 0.00 2.47 4.45 0.00 7.85 58.78 17.32 23.59 45.10 38.52 54.03 26 ER7a ExonRegion 0 3.69 4.69 25.98 16.90 3.49 14.36 10.30 9.26 15.77 20.10 3.17 1.63 0.00 0.44 4.91 0.00 7.14 50.16 23.93 24.22 50.54 37.83 54.13 27 E7a_E8a KnownJunction 0 0.00 9.27 45.47 19.11 7.81 13.46 10.69 11.05 19.97 24.42 0.00 5.70 0.00 0.00 0.00 0.00 4.39 62.01 26.35 14.57 47.82 40.72 60.10 28 ER8a ExonRegion 0 4.03 8.57 55.24 27.38 4.67 15.40 12.15 6.67 19.96 39.40 1.69 1.58 1.47 0.24 2.36 0.00 13.08 41.30 36.30 25.09 59.66 38.42 58.27 29 E8a_E9a KnownJunction 0 10.59 8.62 59.22 29.00 0.00 34.01 12.54 5.91 19.42 56.06 7.16 0.00 0.00 2.47 4.94 0.00 20.20 75.11 43.77 41.80 67.77 28.11 58.82 30 ER9a ExonRegion 0 13.36 9.19 54.26 27.83 4.71 18.80 14.13 8.58 13.16 37.65 1.45 1.57 0.00 0.90 3.10 0.00 13.26 75.90 31.63 28.37 71.01 54.01 63.64 31 E9_Da NovelBoundary 0 0.00 6.51 5.44 1.73 4.16 4.94 2.21 0.00 0.00 3.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.19 4.61 0.00 5.19 0.00 4.01 32 E9a_E10a KnownJunction 0 11.56 3.55 47.66 28.83 0.00 25.44 7.95 5.75 8.45 54.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 64.96 31.53 23.52 60.48 34.29 33.38 33 ER10a ExonRegion 0 4.04 6.58 25.53 20.08 2.41 17.38 10.73 4.55 8.90 28.43 2.14 1.19 0.00 1.02 3.74 0.00 9.34 35.94 22.01 20.19 42.85 30.94 26.56 34 E10a_E11a KnownJunction 0 3.11 11.12 33.50 31.26 11.63 10.11 10.95 8.83 9.92 29.49 6.58 0.00 0.00 2.47 0.00 0.00 4.49 44.44 26.54 25.57 41.02 39.92 31.24 35 ER11a ExonRegion 0 4.88 9.99 30.77 29.33 7.10 15.64 14.59 8.10 10.11 31.93 3.91 2.32 0.00 1.49 3.79 0.00 10.29 38.44 23.80 29.57 52.01 27.56 35.70 36 E11a_E12a KnownJunction 0 13.71 9.27 40.27 42.85 3.74 29.98 16.87 6.08 17.48 42.15 13.21 6.30 0.00 0.00 10.38 0.00 0.00 61.35 25.32 29.59 63.07 25.78 57.11 37 E12_Aa NovelBoundary 0 0.00 0.00 15.49 0.00 4.07 0.00 21.33 0.00 0.00 9.64 2.68 0.00 0.00 0.00 0.00 0.00 4.77 78.47 8.38 11.76 0.00 0.00 3.24 38 ER12a ExonRegion 0 8.71 9.13 52.21 36.76 8.23 13.62 19.00 10.35 20.64 43.55 7.49 5.53 0.00 3.74 3.81 0.77 19.64 63.43 32.59 28.22 61.71 36.38 58.33 39 E12_Da NovelBoundary 0 0.00 6.31 12.39 3.50 0.00 12.55 17.09 8.46 8.83 7.90 0.00 0.00 0.00 0.00 4.45 3.67 0.00 93.27 8.75 2.56 2.78 3.12 0.00 40 E12a_E13a KnownJunction 0 23.71 9.54 67.71 42.59 11.29 22.54 16.30 21.48 38.51 57.22 5.05 6.00 0.00 0.00 0.00 0.00 9.35 81.33 62.50 22.95 61.96 42.07 59.16 41 I12 Intron 0 0.00 2.26 4.40 2.64 0.99 1.70 10.31 6.21 2.73 10.78 0.72 0.66 0.72 2.06 1.68 0.55 3.67 48.40 11.22 16.97 2.04 3.86 5.99 42 I12_SR1 SilentIntronRegion 0 0.00 2.27 4.43 2.66 1.00 1.71 10.39 6.26 2.75 10.86 0.72 0.67 0.72 2.07 1.69 0.56 3.70 48.75 11.31 17.09 2.06 3.89 6.03 43 E13_Aa NovelBoundary 0 0.00 0.00 7.24 6.69 0.00 2.90 17.71 7.43 5.96 16.04 0.00 0.00 0.00 0.00 11.13 0.00 8.79 124.57 12.71 34.39 7.97 5.57 27.40 44 ER13a ExonRegion 0 11.24 7.39 59.48 45.14 5.27 24.73 29.76 17.30 32.66 56.43 7.15 2.82 1.56 3.71 6.93 0.00 22.40 78.76 44.97 40.19 70.64 47.62 84.46 45 E13a_E14a KnownJunction 0 14.37 14.67 54.29 64.56 7.05 39.52 28.53 14.54 36.81 52.14 2.68 12.60 0.00 2.12 19.66 0.00 21.13 49.70 16.47 37.46 76.91 38.64 84.25 46 ER14a ExonRegion 0 6.70 15.90 43.02 28.59 6.21 29.97 25.64 9.30 18.07 36.86 6.26 1.69 0.00 1.81 5.62 1.46 24.58 65.22 35.72 20.10 78.40 48.65 68.80 47 E14_Da NovelBoundary 0 3.78 6.51 9.22 9.86 4.16 11.30 4.33 6.82 1.68 12.46 2.47 0.00 0.00 0.00 0.00 4.36 22.91 55.63 0.00 12.14 14.89 6.25 15.19 48 E14a_E15a KnownJunction 0 14.22 9.34 46.10 43.12 16.21 2.78 8.66 4.72 18.87 39.25 9.63 0.00 0.00 0.00 4.82 4.36 17.48 63.67 18.45 14.64 85.69 47.15 42.60 49 I14 Intron 0 2.77 3.99 17.53 14.84 3.36 7.20 15.67 8.29 5.62 17.81 4.53 3.20 1.47 2.51 1.72 2.27 12.60 77.37 15.29 16.72 9.86 12.16 16.18 50 I14_SR1 SilentIntronRegion 0 2.77 4.00 17.55 14.86 3.36 7.21 15.69 8.30 5.63 17.83 4.54 3.20 1.48 2.51 1.72 2.27 12.62 77.45 15.31 16.73 9.87 12.17 16.20 51 E15_Aa NovelBoundary 0 0.00 0.00 13.54 10.06 0.00 2.73 11.00 4.23 4.46 20.87 0.00 0.00 0.00 11.60 0.00 3.76 4.58 63.13 4.33 17.13 17.61 5.45 4.01 52 ER15a ExonRegion 0 11.71 10.66 51.63 37.97 4.09 18.91 27.09 12.78 20.87 39.72 3.31 2.69 0.89 1.32 5.59 2.33 17.97 87.83 33.96 35.07 60.93 52.09 60.08 53 E15_Da NovelBoundary 0 0.00 3.09 19.84 6.63 0.00 16.01 11.88 8.79 11.14 12.11 2.53 0.00 0.00 2.47 5.81 0.00 0.00 84.65 9.13 18.28 5.50 15.31 11.69 54 E15a_E16a KnownJunction 0 26.52 23.61 43.40 62.20 6.96 9.99 16.12 6.82 28.99 35.38 0.00 11.85 0.00 0.00 4.45 0.00 18.05 80.59 43.20 44.68 62.58 51.62 58.99 55 I15 Intron 0 3.76 4.91 25.42 8.65 2.84 11.07 21.54 8.95 9.02 17.48 12.36 3.40 1.65 9.44 7.74 6.33 13.36 71.69 17.19 19.48 11.42 11.69 14.81 56 I15_SR1 SilentIntronRegion 0 2.25 2.44 16.29 5.68 2.49 9.77 17.98 3.77 6.37 14.34 1.03 4.00 0.51 2.84 2.02 1.58 8.35 60.79 11.46 18.42 12.62 13.32 14.86 57 I15_AR1 ActiveIntronRegion 0 5.51 7.79 36.08 12.11 3.26 12.64 25.75 14.96 12.12 21.20 25.46 2.73 2.96 17.09 14.36 11.83 19.19 84.66 23.89 20.83 10.12 9.89 14.82 58 E16_Aa NovelBoundary 0 3.04 3.22 66.56 19.84 0.00 7.15 53.53 8.67 12.41 26.97 42.12 12.30 0.00 16.30 20.15 15.98 30.86 145.67 0.00 22.56 5.87 11.45 22.19 59 ER16a ExonRegion 0 29.96 30.77 84.89 63.73 12.69 41.34 46.31 21.58 36.65 63.46 24.53 5.92 3.26 17.14 20.91 18.98 32.59 170.99 66.17 54.70 77.20 75.39 95.60 60 E16_Da NovelBoundary 0 3.33 3.09 28.44 9.09 6.88 4.88 22.35 11.01 8.42 27.48 21.74 12.60 0.00 19.13 18.54 36.40 43.67 120.50 13.08 34.20 27.06 29.27 21.00 61 E16a_E17a KnownJunction 0 37.71 18.09 80.75 62.53 16.81 36.63 24.55 3.53 29.14 66.13 2.68 0.00 6.82 0.00 0.00 0.00 25.71 64.38 38.68 23.84 63.14 53.03 75.63 62 I16 Intron 0 6.27 10.30 15.11 3.26 3.97 5.66 19.78 3.50 3.86 13.09 23.87 4.87 6.34 13.34 12.58 18.35 17.12 53.55 9.05 16.82 12.52 6.44 11.60 63 I16_AR1 ActiveIntronRegion 0 6.30 10.34 15.18 3.28 3.98 5.69 19.88 3.52 3.88 13.15 23.98 4.90 6.37 13.41 12.64 18.44 17.19 53.81 9.09 16.90 12.58 6.47 11.66 64 E17_Aa NovelBoundary 0 0.00 9.60 34.36 10.75 0.00 8.63 11.61 20.29 4.22 15.04 22.27 5.85 6.82 14.66 10.26 31.53 16.64 120.84 11.01 14.38 11.12 2.63 3.24 65 ER17a ExonRegion 0 20.45 16.83 76.32 59.71 12.63 32.43 24.19 11.94 29.38 64.58 19.67 10.86 2.57 9.55 11.53 13.77 34.68 76.52 36.91 38.06 73.05 54.26 86.80 66 E17_Da NovelBoundary 0 3.78 3.35 10.29 3.23 0.00 2.90 19.43 2.55 1.45 6.26 25.06 0.00 0.00 6.83 5.19 49.05 31.79 165.36 18.26 6.46 0.00 0.00 0.00 67 E17a_E18a KnownJunction 0 23.04 29.14 104.28 78.35 15.37 43.90 30.16 15.81 37.35 75.56 4.63 11.25 5.84 4.59 4.45 0.00 30.67 96.59 44.33 39.12 88.53 71.77 113.28 68 E18_Aa NovelBoundary 0 0.00 0.00 0.00 0.00 4.07 6.81 8.74 1.93 1.71 1.67 2.63 0.00 0.00 13.95 4.45 0.00 4.77 24.25 4.71 0.00 0.00 0.00 0.00 69 ER18a ExonRegion 0 22.45 27.18 99.80 70.91 14.05 40.77 30.22 23.13 38.13 69.41 12.07 9.25 1.34 5.21 7.48 5.16 17.99 94.24 47.48 37.31 84.67 58.47 111.27 70 E18_Da NovelBoundary 0 0.00 0.00 37.11 8.59 3.82 0.00 8.39 9.12 7.90 17.86 4.95 5.40 0.00 2.47 13.35 8.72 12.06 25.70 0.00 5.31 3.03 6.18 20.32 71 E18a_E19a KnownJunction 0 10.15 9.14 39.89 39.09 19.78 40.83 33.34 20.45 23.58 32.93 2.32 0.00 0.00 0.00 4.45 0.00 3.93 31.34 17.22 24.35 42.56 43.66 110.46 72 I18 Intron 0 1.14 1.65 14.28 5.48 1.44 3.46 10.00 2.09 2.48 9.68 18.26 2.89 1.04 5.54 4.84 12.03 13.36 33.46 6.89 6.32 7.14 4.50 5.55 73 I18_SR1 SilentIntronRegion 0 1.59 1.16 3.63 0.63 0.00 3.60 12.15 0.00 1.37 1.39 8.21 0.00 0.00 8.00 0.73 12.42 4.01 10.62 5.01 3.88 7.16 3.20 1.26 74 I18_AR1 ActiveIntronRegion 0 1.04 1.75 16.78 6.61 1.80 3.38 9.43 2.59 2.74 11.51 20.58 3.59 1.30 4.77 5.65 11.85 15.48 38.90 7.25 6.97 7.05 4.76 6.34 75 E19_Aa NovelBoundary 0 10.08 0.00 11.24 1.80 0.00 21.41 15.77 6.61 8.68 15.28 4.74 0.00 0.00 9.54 8.90 7.26 8.32 79.63 0.00 6.01 0.00 0.00 12.63 76 ER19a ExonRegion 0 19.65 28.99 79.01 53.04 18.45 24.40 47.18 12.18 22.17 51.41 22.32 7.83 6.06 16.91 9.08 13.40 33.11 98.96 51.55 30.01 50.38 52.14 66.16 77 ER19b ExonRegion 0 1.21 5.52 0.88 1.36 1.53 1.57 3.03 0.49 0.00 1.31 5.52 0.00 2.68 0.00 0.00 8.49 2.36 2.11 0.00 0.91 0.63 0.30 4.20