Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ADPGK Gene 0 324.03 138.12 125.84 113.80 136.71 131.30 96.31 118.79 107.18 89.47 340.82 276.90 201.16 303.38 289.95 330.50 233.99 168.67 109.40 84.14 202.88 221.41 204.08 2 311669 Transcript 0 7.03 14.56 15.32 8.75 5.30 8.75 8.43 4.79 21.52 8.35 54.56 1.09 13.44 45.21 107.48 76.87 49.57 65.49 16.14 31.58 59.87 40.45 47.47 3 443764 Transcript 0 9.44 1.22 7.47 7.32 14.28 17.75 13.02 8.80 10.24 5.40 11.60 16.39 9.16 6.47 5.85 11.89 16.76 19.87 13.43 6.55 11.49 7.12 22.32 4 331065 Transcript 0 0.00 0.00 58.75 44.12 0.00 0.00 0.00 23.49 40.45 31.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 65.37 0.00 0.00 0.00 0.00 0.00 5 450412 Transcript 1 9.27 7.72 1.34 2.12 0.40 2.43 5.73 0.51 3.96 2.48 3.40 9.01 27.63 6.43 4.90 6.59 3.84 2.60 2.63 3.19 0.00 3.04 4.29 6 456471 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.20 0.07 0.00 0.00 1.15 0.21 0.00 0.00 0.00 0.16 0.00 0.18 0.10 0.18 0.00 0.00 0.12 0.00 7 ER1a ExonRegion 0 6.80 6.69 4.08 3.01 3.31 15.39 8.87 2.56 4.28 2.17 15.30 2.17 2.05 34.15 30.65 21.64 15.64 16.37 6.40 10.93 25.03 15.27 12.91 8 E1a_E2b KnownJunction 1 7.26 22.43 26.55 14.48 7.30 2.10 7.99 7.02 38.77 14.53 93.81 0.00 24.84 56.27 184.31 132.10 83.50 114.62 25.88 52.22 94.70 65.64 82.03 9 E1a_E3a NovelJunction 0 0.00 6.51 3.43 0.00 0.00 0.00 0.00 0.00 1.45 0.00 4.63 0.00 0.00 4.77 0.00 15.55 0.00 2.36 0.00 0.00 0.00 3.12 0.00 10 Ix_SR2 SilentIntronRegion 0 7.36 11.74 4.95 7.76 13.04 7.84 20.42 8.01 7.99 4.60 13.01 24.80 34.75 7.32 6.25 15.85 22.60 8.82 7.49 11.31 6.45 5.76 8.75 11 ER2a ExonRegion 0 9.44 1.22 7.47 7.32 14.28 17.75 13.02 8.80 10.24 5.40 11.60 16.39 9.16 6.47 5.85 11.89 16.76 19.87 13.43 6.55 11.49 7.12 22.32 12 E2_Ab KnownBoundary 0 10.96 2.96 16.29 18.81 14.77 35.09 33.34 21.03 19.39 11.28 10.16 50.57 6.82 4.65 8.90 19.82 25.81 30.47 11.48 11.31 14.02 2.82 8.71 13 ER2b ExonRegion 0 39.13 50.21 42.25 42.85 54.34 66.67 43.53 39.45 71.31 41.34 238.16 114.11 68.40 222.83 281.28 196.55 192.24 145.86 97.34 84.45 186.90 96.96 122.22 14 E2_Ac KnownBoundary 1 42.53 74.20 38.97 43.65 78.86 122.43 98.44 63.91 81.25 45.85 309.97 107.28 60.87 276.59 299.52 210.80 210.75 150.31 149.27 103.99 232.90 149.29 148.45 15 ER2c ExonRegion 0 62.14 71.84 54.41 51.64 58.64 109.53 69.06 59.48 92.35 70.69 353.72 218.44 137.11 329.20 295.33 267.74 251.06 217.92 110.13 103.95 276.59 182.89 170.45 16 E2a_E3a KnownJunction 1 48.82 80.91 68.03 65.89 41.68 76.72 63.46 64.90 103.76 96.76 366.72 287.94 80.03 355.76 341.06 258.91 241.23 201.67 137.51 104.25 202.51 226.87 221.77 17 E2a_E4a NovelJunction 0 3.56 2.70 0.00 1.90 0.00 0.00 2.25 0.00 4.60 0.00 7.37 0.00 0.00 2.35 4.45 0.00 0.00 5.84 4.71 2.68 8.59 0.00 7.94 18 ER3a ExonRegion 0 56.27 60.20 67.76 65.55 76.83 103.68 73.34 84.53 109.81 99.36 419.29 312.00 185.37 416.19 432.10 393.97 288.44 205.07 157.09 113.61 303.97 262.85 253.34 19 E3a_E4a KnownJunction 0 58.45 53.02 73.50 70.72 127.08 127.31 62.62 107.53 120.69 88.81 320.55 365.07 197.23 413.09 333.03 372.64 228.42 208.59 121.60 84.63 298.14 230.67 261.81 20 E3a_E8a NovelJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 4.77 0.00 0.00 0.00 0.00 9.37 0.00 21 ER4a ExonRegion 0 41.05 76.91 72.54 74.67 105.00 130.93 76.48 85.21 106.05 97.52 331.96 335.59 218.73 355.76 238.38 322.19 281.67 204.64 124.81 104.71 292.38 229.08 225.88 22 E4_Da NovelBoundary 0 25.12 38.48 21.32 38.06 18.00 13.40 48.58 36.80 34.43 31.56 108.50 123.49 100.64 114.96 48.46 96.56 86.30 62.01 57.23 74.21 44.29 44.03 65.39 23 E4a_E5a KnownJunction 0 39.49 91.04 70.46 52.84 92.28 155.48 36.79 64.49 84.75 93.37 246.96 233.33 82.30 293.13 261.70 270.61 213.18 136.46 65.41 77.21 226.11 206.42 225.36 24 E4a_E7a NovelJunction 0 6.30 2.89 0.00 7.03 0.00 0.00 1.68 4.07 3.41 2.95 17.00 0.00 0.00 2.24 0.00 12.48 0.00 8.58 19.20 2.81 0.00 2.33 0.00 25 Ix Intron 0 67.46 32.63 31.19 37.65 55.32 32.08 38.91 39.93 39.51 25.59 122.19 138.29 140.88 140.46 75.67 148.27 85.44 49.91 37.89 33.97 44.27 62.43 67.77 26 Ix_AR2 ActiveIntronRegion 0 52.35 30.25 28.28 36.27 52.10 28.00 38.45 37.44 37.79 24.69 126.06 149.85 159.73 144.11 75.03 145.17 85.70 42.92 35.69 34.39 37.45 63.48 68.44 27 Ix_AR1 ActiveIntronRegion 0 131.16 42.71 43.51 43.58 69.03 49.36 40.96 50.56 46.85 29.45 106.35 90.13 62.17 125.57 78.61 161.78 84.60 79.43 47.23 32.28 73.08 58.22 65.19 28 E5_Aa NovelBoundary 1 164.47 41.77 55.17 39.26 63.67 71.44 39.00 49.41 54.72 39.94 125.14 53.42 45.94 180.76 115.21 239.00 32.91 87.14 43.67 34.71 64.25 41.76 92.53 29 ER5a ExonRegion 0 223.91 118.43 136.96 110.94 113.82 163.05 109.55 141.20 151.22 115.69 483.77 324.51 257.48 502.71 349.76 527.97 375.43 213.26 173.48 135.59 357.02 262.48 318.96 30 E5_Da NovelBoundary 0 103.43 44.47 57.36 79.64 78.01 53.15 60.50 86.95 68.23 54.77 195.15 98.13 74.51 241.27 145.50 244.72 198.22 142.48 96.19 66.41 94.40 120.87 137.01 31 E5a_E7a KnownJunction 0 219.74 75.71 147.39 103.25 87.44 173.54 89.12 135.22 135.56 117.66 444.48 261.84 187.81 354.11 323.75 413.40 374.38 139.49 113.32 112.56 377.34 348.97 297.23 32 Ix Intron 0 10.32 5.37 18.18 16.51 8.16 6.71 9.15 15.70 14.22 10.42 29.46 8.12 11.55 23.29 13.52 44.69 30.85 39.37 18.12 13.83 12.99 18.63 22.08 33 Ix_AR1 ActiveIntronRegion 0 10.40 5.41 18.31 16.64 8.22 6.76 9.22 15.83 14.33 10.50 29.68 8.19 11.64 23.48 13.63 45.04 31.09 39.68 18.27 13.95 13.09 18.78 22.25 34 ER6a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.20 0.07 0.00 0.00 1.15 0.21 0.00 0.00 0.00 0.16 0.00 0.18 0.10 0.18 0.00 0.00 0.12 0.00 35 Ix Intron 0 19.48 10.78 16.80 22.49 11.68 7.72 14.45 22.09 17.22 16.53 34.67 10.13 15.96 29.61 17.43 52.39 35.01 48.14 29.31 19.58 22.00 17.22 22.90 36 Ix_AR1 ActiveIntronRegion 0 19.60 10.85 16.91 22.63 11.76 7.77 14.54 22.21 17.33 16.63 34.88 10.19 16.06 29.78 17.54 52.70 35.22 48.43 29.49 19.70 22.13 17.32 23.03 37 E7_Aa NovelBoundary 0 36.01 31.84 29.33 55.50 7.72 9.77 53.79 37.58 26.82 25.28 38.75 12.00 33.93 51.92 43.51 89.38 43.67 87.47 36.24 34.32 23.23 14.57 43.62 38 ER7a ExonRegion 0 231.94 93.17 164.19 135.43 100.52 131.40 93.88 142.19 141.25 118.76 482.37 185.25 176.33 470.83 362.22 528.23 342.16 258.16 167.38 108.85 334.94 272.27 280.52 39 E7_Da NovelBoundary 0 20.89 19.27 7.57 17.25 15.70 5.68 27.65 33.89 20.54 15.45 28.69 37.51 28.08 54.92 19.66 66.56 36.19 77.23 9.32 21.99 23.29 18.06 38.84 40 E7a_E8a KnownJunction 0 234.26 59.13 104.90 83.34 107.47 93.58 40.81 100.22 75.90 52.46 237.11 129.79 130.51 270.65 206.56 350.51 153.62 154.50 86.78 77.72 180.88 138.69 134.02 41 E7a_E8b KnownJunction 0 190.55 73.47 93.76 76.78 48.81 66.21 66.51 77.14 70.40 71.35 245.75 159.35 139.11 255.40 261.82 226.44 156.33 145.67 144.00 55.29 141.72 164.47 198.30 42 Ix Intron 0 53.66 21.63 21.33 22.04 33.68 13.53 27.87 22.73 19.70 15.02 40.33 40.25 51.19 35.43 24.43 57.08 36.77 33.64 21.78 16.85 15.86 39.64 30.48 43 Ix_SR1 SilentIntronRegion 0 28.29 18.21 14.22 15.52 24.76 7.57 21.93 17.60 16.10 13.35 28.72 33.73 36.25 35.73 15.51 58.38 30.78 36.80 19.59 18.05 14.19 31.70 25.99 44 Ix_AR1 ActiveIntronRegion 0 72.45 24.21 26.62 26.89 40.33 17.95 32.32 26.58 22.41 16.30 48.98 45.17 62.33 35.34 31.05 56.31 41.30 31.44 23.46 16.04 17.13 45.60 33.89 45 ER8a ExonRegion 0 231.23 68.63 122.84 93.36 94.32 106.82 50.31 121.86 95.72 71.68 315.55 172.10 128.98 305.74 246.61 401.98 232.71 198.63 126.62 82.98 213.21 164.60 196.76 46 ER8b ExonRegion 0 308.24 126.02 199.01 174.10 142.54 172.33 101.38 158.22 141.09 126.02 515.08 279.68 220.01 458.35 374.20 545.31 351.38 342.56 162.81 113.54 345.22 281.62 308.19 47 E8_Da KnownBoundary 0 148.40 71.30 95.68 85.00 41.09 49.69 38.64 63.66 54.11 54.23 133.03 77.13 87.01 88.82 103.84 154.23 117.34 130.25 57.51 45.96 122.44 83.28 87.75 48 E8a_E8c KnownJunction 0 0.00 0.00 58.75 44.12 0.00 0.00 0.00 23.49 40.45 31.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 65.37 0.00 0.00 0.00 0.00 0.00 49 E8_Ac KnownBoundary 0 121.50 30.92 71.43 82.37 40.32 32.54 31.89 40.25 35.82 42.71 100.82 57.17 94.96 65.87 72.81 108.95 63.96 114.41 11.11 25.82 115.28 72.56 63.60 50 ER8c ExonRegion 0 226.82 101.00 139.69 128.79 64.66 89.55 79.44 95.64 82.55 92.52 249.67 194.83 196.20 254.72 309.47 279.88 197.50 202.64 65.30 62.41 264.08 175.71 155.64 51 ER8d ExonRegion 0 563.71 175.85 184.18 153.37 180.24 155.21 127.65 157.98 134.63 111.79 483.57 219.69 188.25 418.24 400.97 465.55 316.07 252.04 133.16 99.68 317.40 302.31 288.08 52 E8_Db KnownBoundary 0 1211.92 321.92 299.81 222.95 206.62 209.42 172.41 235.40 198.41 152.28 615.68 427.04 268.98 449.47 469.62 539.09 401.78 276.62 158.31 152.70 307.03 313.33 301.42 53 ER8e ExonRegion 0 966.89 320.61 210.81 187.65 241.05 238.51 171.05 249.49 190.66 146.15 591.54 415.63 396.71 447.41 381.20 457.85 365.55 236.20 126.09 131.76 257.32 367.21 304.48 54 E8_Dc KnownBoundary 0 1009.88 440.58 177.14 187.26 364.43 259.79 205.89 247.35 166.00 141.08 634.84 515.27 511.98 386.84 420.18 389.30 362.88 118.39 102.21 87.63 151.42 358.03 232.27 55 ER8f ExonRegion 0 529.90 223.36 169.22 159.49 218.81 169.44 136.34 161.77 129.23 110.38 366.77 424.80 289.83 296.29 347.82 346.80 236.06 144.67 116.92 86.25 155.74 280.41 220.81 56 E8_Dd KnownBoundary 0 6.67 16.05 1.39 6.86 6.96 5.79 5.48 1.85 3.04 5.35 4.53 29.26 20.94 13.83 0.00 11.88 8.32 9.45 20.33 9.46 0.00 0.00 15.71 57 ER8g ExonRegion 0 9.27 7.72 1.34 2.12 0.40 2.43 5.73 0.51 3.96 2.48 3.40 9.01 27.63 6.43 4.90 6.59 3.84 2.60 2.63 3.19 0.00 3.04 4.29 58 IG13_SR3 SilentIntergenicRegion 0 7.46 7.76 2.84 8.61 5.73 4.30 8.41 5.51 7.06 4.37 2.64 8.93 16.93 3.59 4.58 6.62 9.60 3.61 5.02 6.11 1.14 2.24 4.48