Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MFGE8 Gene 0 120.29 14.54 225.21 107.34 85.77 90.82 35.05 120.39 159.64 108.01 265.68 9.00 80.11 63.25 130.20 22.01 101.80 77.10 22.86 25.85 950.64 1319.42 977.56 2 268150 Transcript 0 142.44 10.43 223.51 97.38 90.05 74.75 31.53 126.37 161.59 112.49 234.90 11.28 77.09 51.44 103.46 16.05 87.12 71.36 18.19 23.64 778.62 1131.84 749.20 3 268151 Transcript 0 7.26 3.29 11.89 0.00 3.65 0.00 0.00 4.64 1.16 10.91 34.22 0.00 22.24 2.24 10.75 4.10 11.50 1.62 3.58 0.00 162.23 150.33 139.31 4 ER1a ExonRegion 0 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.32 0.00 1.76 0.00 0.00 1.62 0.00 0.00 2.44 2.01 0.55 0.00 5.17 3.35 7.15 5 ER1b ExonRegion 0 53.87 6.23 38.24 12.80 32.60 53.50 14.74 24.80 32.38 24.32 88.94 1.83 9.91 15.67 34.42 10.38 30.03 45.95 13.65 7.04 416.23 568.03 623.39 6 E1a_E2a KnownJunction 1 15.41 0.00 46.24 9.92 3.48 5.74 1.94 25.22 32.99 34.22 139.35 0.00 6.82 14.66 35.85 3.85 39.83 18.61 8.85 0.00 819.79 192.95 165.95 7 I1 Intron 0 13.51 0.26 8.58 3.61 9.82 4.61 2.87 10.25 7.33 4.45 42.13 1.47 19.60 17.97 13.84 2.84 19.86 10.99 3.21 4.49 41.63 60.70 59.75 8 I1_AR1 ActiveIntronRegion 0 11.77 0.12 7.18 1.95 8.04 3.34 2.52 8.86 5.17 3.99 31.63 0.63 12.64 18.83 10.61 1.08 19.93 11.80 4.31 4.29 46.21 69.04 54.38 9 I1_SR2 SilentIntronRegion 1 10.30 0.00 9.14 1.22 6.26 1.91 1.85 10.83 8.54 7.76 43.40 0.83 46.07 28.54 20.61 0.17 30.05 16.55 6.84 4.38 42.45 63.42 82.61 10 I1_AR2 ActiveIntronRegion 1 13.86 0.00 12.23 1.36 16.66 4.77 2.25 8.22 9.04 5.24 63.79 5.31 32.30 24.64 16.15 0.00 26.66 10.18 2.04 8.71 37.01 52.91 69.09 11 I1_SR3 SilentIntronRegion 0 9.11 0.00 5.71 3.04 9.05 2.10 2.99 7.93 4.09 3.09 30.07 0.49 17.53 13.47 9.60 0.00 9.60 7.16 2.20 1.93 26.48 47.99 47.54 12 I1_SR4 SilentIntronRegion 0 20.17 0.30 7.09 4.89 10.99 4.35 1.93 11.44 13.24 4.18 47.12 0.97 11.58 20.63 16.96 6.75 24.26 10.08 2.37 5.64 43.48 70.68 75.85 13 I1_AR3 ActiveIntronRegion 0 21.39 0.35 13.02 6.04 13.16 7.10 3.41 8.55 9.28 5.33 71.61 3.18 28.49 17.47 11.78 3.60 22.22 14.42 2.08 6.46 45.93 69.47 78.88 14 I1_SR5 SilentIntronRegion 0 17.80 0.00 8.67 4.23 3.22 1.60 2.27 6.47 3.45 3.35 34.79 0.00 21.77 6.58 9.67 2.82 15.66 6.40 0.90 1.75 27.74 24.63 41.87 15 I1_AR4 ActiveIntronRegion 0 13.01 0.60 11.23 5.05 11.74 7.51 3.97 14.70 8.62 5.63 48.22 2.53 27.88 19.36 19.83 4.78 22.71 12.09 3.26 4.98 47.22 57.47 59.73 16 E2_Aa NovelBoundary 0 13.93 3.16 16.74 1.90 12.39 2.90 7.99 8.54 12.27 9.24 50.17 0.00 14.45 34.61 32.14 4.36 16.83 17.12 13.46 17.83 47.32 37.29 76.06 17 ER2a ExonRegion 0 31.30 4.36 127.14 63.44 22.12 35.45 10.50 79.59 120.09 80.02 245.86 3.54 36.45 62.80 108.14 19.84 99.50 70.31 21.02 26.66 910.30 1303.89 1145.00 18 E2a_E3a KnownJunction 1 36.75 3.16 173.38 103.55 46.10 97.50 10.38 101.66 143.26 90.09 195.94 7.50 6.82 40.67 63.42 30.08 94.81 67.53 9.22 17.07 800.26 618.15 810.10 19 ER3a ExonRegion 0 113.75 16.40 175.67 93.13 79.55 115.08 33.72 112.84 165.34 105.70 272.72 6.99 66.49 75.03 131.15 16.62 114.52 85.04 23.12 29.86 1148.00 1118.59 769.64 20 E3a_E4a KnownJunction 0 171.44 33.22 203.22 125.06 101.53 110.39 58.34 150.25 200.17 117.23 323.98 13.65 88.47 105.54 217.94 19.91 149.42 116.53 34.82 19.88 1321.66 1724.03 1082.06 21 ER4a ExonRegion 0 139.79 34.05 308.43 169.45 115.56 132.14 59.46 158.64 244.81 144.29 390.13 12.51 138.40 97.61 177.03 20.79 117.54 121.00 35.77 38.16 1283.84 2033.71 1299.21 22 E4a_E5a KnownJunction 0 224.41 45.85 467.16 298.13 222.07 237.99 113.37 273.18 338.62 198.78 565.09 32.11 125.97 142.62 232.15 20.42 171.39 174.60 38.40 57.59 1530.35 2993.52 1808.33 23 ER5a ExonRegion 0 191.14 23.81 408.31 223.73 146.61 152.41 71.40 196.17 293.31 166.41 465.79 16.60 151.54 94.68 168.31 32.92 162.36 141.31 31.72 45.05 1416.19 2462.26 1624.92 24 E5a_E6a KnownJunction 0 246.64 57.36 402.06 218.62 166.13 221.52 73.27 188.28 265.28 157.92 421.26 6.90 229.21 113.43 197.42 43.83 181.95 85.27 52.99 40.72 1417.48 2522.82 1674.48 25 I5 Intron 0 13.92 1.38 8.68 5.73 13.00 8.17 7.19 9.29 13.35 4.39 52.04 1.12 13.02 17.87 15.30 5.30 22.55 17.26 2.91 6.54 53.28 78.06 92.01 26 I5_AR1 ActiveIntronRegion 1 10.75 1.45 9.20 5.97 12.96 8.52 7.46 10.02 14.39 4.07 55.39 1.24 13.13 19.71 16.19 6.72 22.80 17.86 2.53 7.60 58.68 85.18 102.33 27 I5_SR1 SilentIntronRegion 0 16.39 2.18 8.64 6.96 19.61 8.80 8.75 10.13 11.72 6.12 50.54 0.75 20.28 22.85 15.99 3.06 20.85 16.33 4.11 5.40 45.90 74.75 78.90 28 I5_AR2 ActiveIntronRegion 1 16.81 1.98 7.68 5.60 10.69 9.13 7.80 12.00 13.28 4.51 64.23 0.58 13.42 20.95 18.76 3.97 26.63 24.83 5.69 4.22 55.57 88.75 100.93 29 I5_AR4 ActiveIntronRegion 0 24.16 0.54 10.43 5.94 10.31 5.85 6.33 8.21 15.64 5.22 45.69 0.00 9.34 9.91 13.33 3.95 24.55 15.13 2.12 5.65 50.91 70.56 84.26 30 E6_Aa NovelBoundary 0 95.42 5.13 26.29 17.11 22.16 33.84 4.33 25.84 40.71 11.95 119.56 0.00 13.64 22.01 51.67 19.48 25.81 74.53 20.61 32.34 109.10 200.36 415.38 31 ER6a ExonRegion 0 239.22 38.29 319.38 141.90 141.89 164.45 69.45 175.96 229.48 152.88 393.56 20.59 117.40 90.27 166.59 31.60 154.29 96.17 27.81 32.64 1362.99 1927.06 1415.99 32 E6a_E7a KnownJunction 0 330.87 27.17 359.98 165.15 121.82 90.86 55.20 189.72 228.59 168.75 289.60 30.91 141.22 50.56 142.16 19.82 125.11 91.86 27.11 40.97 1255.87 1831.00 1117.32 33 E6a_E8a KnownJunction 0 7.26 3.29 11.89 0.00 3.65 0.00 0.00 4.64 1.16 10.91 34.22 0.00 22.24 2.24 10.75 4.10 11.50 1.62 3.58 0.00 162.23 150.33 139.31 34 I6 Intron 0 26.87 2.48 7.49 5.08 15.43 9.66 5.94 7.57 4.19 3.69 35.25 1.67 13.97 12.07 14.20 3.62 13.54 8.86 0.53 3.42 31.40 59.59 51.60 35 I6_SR1 SilentIntronRegion 0 43.50 2.12 7.60 7.40 16.01 10.02 8.27 10.71 7.65 4.00 41.24 0.00 12.42 13.82 10.48 1.55 14.55 7.42 0.83 3.32 32.03 53.59 49.64 36 I6_AR1 ActiveIntronRegion 0 34.66 4.81 8.50 5.76 25.46 14.65 8.47 8.79 5.80 3.73 43.06 4.66 29.01 13.69 15.16 7.01 16.61 10.62 0.00 4.23 38.94 73.96 61.57 37 ER7a ExonRegion 0 170.35 18.48 340.95 138.94 143.91 143.61 52.53 202.44 260.28 176.54 458.64 13.49 112.50 99.61 170.26 33.70 167.33 136.07 27.97 36.14 1374.17 1807.71 1350.35 38 E7a_E8a KnownJunction 0 207.81 6.51 415.04 182.83 181.83 139.29 48.58 239.67 318.78 216.59 423.53 12.00 124.67 103.77 201.99 26.75 137.45 126.85 35.30 41.10 1253.46 2010.91 1260.90 39 ER8a ExonRegion 0 102.78 6.96 210.34 96.54 72.43 61.30 23.29 105.68 125.06 95.38 193.53 6.83 70.67 48.84 127.88 20.80 81.30 51.55 19.89 20.84 751.43 1020.97 769.04 40 ER8b ExonRegion 0 3.17 0.00 0.61 0.00 2.68 0.00 1.32 0.00 0.00 0.57 0.97 0.00 7.04 1.62 2.90 0.00 3.30 0.00 0.00 0.00 4.41 6.25 10.28