Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NTRK3 Gene 0 9.43 11.71 5.56 55.20 7.90 7.35 3.09 43.86 40.35 129.18 0.00 0.16 0.19 0.09 0.15 0.03 0.05 33.79 29.97 34.66 0.42 1.57 0.75 2 394480 Transcript 0 2.14 3.29 1.56 11.23 2.16 2.14 0.63 11.50 12.11 33.16 0.00 0.05 0.06 0.03 0.05 0.01 0.02 7.58 11.43 9.42 0.38 0.24 0.08 3 317501 Transcript 0 25.37 6.98 7.12 78.98 14.22 9.62 4.66 65.17 26.91 198.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.89 38.15 27.13 1.10 6.55 0.92 4 343782 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 360948 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 357724 Transcript 0 0.00 5.13 11.38 54.34 6.62 0.00 0.00 47.97 23.09 161.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 108.82 59.30 23.01 0.00 0.00 0.00 7 355254 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 ER1a ExonRegion 0 2.08 0.00 0.47 0.00 1.31 0.00 0.00 0.42 0.50 3.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 12.59 4.17 0.00 0.00 0.00 9 E1_Da NovelBoundary 0 0.00 0.00 1.39 2.06 0.00 0.00 0.00 3.98 5.93 12.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.14 30.68 22.37 0.00 0.00 0.00 10 E1a_E2a KnownJunction 0 0.00 0.00 1.83 0.00 0.00 0.00 0.00 4.27 3.50 9.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.39 0.00 0.00 0.00 0.00 0.00 11 E2_Aa NovelBoundary 0 0.00 0.00 0.00 6.13 0.00 2.44 0.00 15.20 12.04 32.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.21 64.00 12.53 0.00 3.12 6.74 12 ER2a ExonRegion 0 0.00 0.50 0.77 1.27 0.00 1.45 0.00 5.43 3.12 12.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.26 13.13 3.32 1.43 0.00 0.00 13 E2_Ab KnownBoundary 0 0.00 2.89 1.57 5.43 0.00 2.16 0.00 14.01 3.41 31.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.81 9.51 12.14 2.84 0.00 0.00 14 ER2b ExonRegion 0 0.00 0.52 0.00 0.21 0.00 0.72 0.00 1.22 1.00 10.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.59 4.82 3.26 0.21 1.07 0.00 15 E2_Da NovelBoundary 0 12.97 0.00 0.00 0.00 4.33 5.11 2.25 2.46 3.10 9.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.49 28.61 0.00 2.35 0.00 0.00 16 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.06 0.00 17 E3_Aa NovelBoundary 0 0.00 3.35 1.71 8.92 8.32 8.69 1.68 20.13 7.12 38.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.69 27.20 21.92 0.00 0.00 0.00 18 ER3a ExonRegion 0 7.92 8.36 5.78 53.28 2.83 6.80 3.81 43.59 27.29 177.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55.52 82.38 60.73 2.14 1.66 3.90 19 E3a_E4a KnownJunction 0 15.71 14.60 11.15 81.54 6.62 0.00 9.14 63.09 59.03 289.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 71.09 111.06 87.06 0.00 3.12 12.04 20 ER4a ExonRegion 0 19.95 14.86 12.12 64.71 12.31 8.00 4.18 58.91 57.80 253.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 84.75 78.74 76.08 7.05 2.03 4.50 21 E4a_E5a KnownJunction 0 32.60 24.86 13.96 93.73 12.31 8.52 6.71 85.19 57.78 289.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 129.71 42.07 81.81 8.34 0.00 0.00 22 ER5a ExonRegion 0 22.28 21.95 15.30 114.39 8.32 10.47 10.72 88.80 58.96 296.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 164.73 165.20 83.19 7.50 2.60 6.85 23 E5a_E6a KnownJunction 0 27.41 31.51 15.73 125.53 14.77 4.77 10.16 96.11 63.22 320.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 141.44 123.02 72.35 5.56 5.39 7.94 24 ER6a ExonRegion 0 28.10 14.91 13.30 109.96 16.25 9.04 7.69 81.14 56.15 277.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 89.15 86.47 73.33 4.06 6.25 3.58 25 E6a_E7a KnownJunction 0 60.83 8.95 18.07 145.67 20.03 15.33 15.50 78.04 68.20 297.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 90.95 120.19 72.48 0.00 5.45 8.71 26 ER7a ExonRegion 0 24.35 17.39 16.97 159.08 9.25 10.58 7.27 115.74 67.55 346.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 111.30 98.24 99.03 2.37 6.53 4.01 27 E7a_E8a KnownJunction 0 41.19 24.73 26.55 174.94 20.12 22.15 3.80 129.18 78.96 349.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 159.84 116.90 120.68 2.97 5.57 3.84 28 ER8a ExonRegion 0 23.55 13.50 23.40 169.25 7.24 7.87 8.09 144.20 93.83 450.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 224.50 166.26 162.45 3.78 11.70 3.47 29 E8a_E9a KnownJunction 0 16.23 9.74 19.60 145.44 11.46 14.99 4.50 156.99 105.64 441.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 225.67 237.09 206.07 2.35 11.21 4.35 30 ER9a ExonRegion 0 25.10 12.23 21.93 145.55 10.08 14.53 5.10 151.93 84.09 441.91 0.00 1.01 0.00 0.00 0.00 0.00 0.00 219.37 158.64 150.10 5.40 13.91 6.45 31 E9a_E10a KnownJunction 0 40.82 16.84 21.58 186.09 24.02 11.30 11.31 155.38 99.36 464.42 0.00 7.35 0.00 0.00 0.00 0.00 0.00 241.09 202.45 216.04 0.00 22.72 3.33 32 ER10a ExonRegion 0 26.60 15.24 21.03 153.37 9.76 16.50 7.98 122.23 85.08 417.17 0.00 0.26 0.00 0.00 0.00 0.00 0.00 176.40 120.93 102.18 3.90 7.61 4.49 33 E10a_E11a KnownJunction 0 10.59 9.87 9.85 90.73 0.00 10.11 1.90 38.98 56.39 156.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48.79 32.75 45.32 2.78 5.20 4.35 34 E10a_E12a KnownJunction 0 0.00 5.13 11.38 54.34 6.62 0.00 0.00 47.97 23.09 161.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 108.82 59.30 23.01 0.00 0.00 0.00 35 E11a_E12a KnownJunction 0 17.93 0.00 4.61 85.84 4.33 11.02 6.01 66.50 46.79 119.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 78.18 80.94 45.38 0.00 5.69 4.35 36 ER11a ExonRegion 0 14.82 6.27 10.21 116.36 3.34 8.56 3.03 70.72 70.04 184.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 85.77 62.65 47.69 2.20 5.47 5.63 37 ER12a ExonRegion 0 23.05 9.17 22.57 162.37 15.52 15.60 9.27 125.11 78.82 309.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 161.41 123.64 71.10 4.95 4.94 1.13 38 E12a_E13a KnownJunction 0 36.45 2.63 25.04 200.34 14.77 23.40 13.47 134.02 75.58 339.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 163.20 121.98 85.52 5.25 3.12 0.00 39 ER13a ExonRegion 0 12.08 8.59 26.68 172.94 7.87 17.43 5.64 124.01 68.35 359.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 105.48 121.04 80.27 1.52 5.22 8.18 40 E13a_E14a KnownJunction 0 7.19 8.49 26.99 149.43 3.65 4.60 7.55 113.32 64.55 325.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 84.07 85.56 82.01 0.00 3.12 4.27 41 ER14a ExonRegion 0 22.92 9.90 15.39 124.77 5.61 12.32 6.47 92.26 49.95 281.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 82.22 92.88 68.85 0.59 5.00 2.67 42 E14a_E15a KnownJunction 0 14.52 3.35 0.00 62.53 7.56 4.83 2.16 54.79 26.24 161.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.38 32.28 15.47 0.00 3.00 0.00 43 E14a_E16a NovelJunction 0 0.00 0.00 1.51 5.66 7.39 0.00 0.00 9.69 1.56 22.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.95 7.53 15.53 0.00 0.00 0.00 44 E14a_E17a KnownJunction 0 9.19 0.00 9.49 48.08 0.00 0.00 0.00 20.78 18.95 56.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26.65 40.47 29.40 0.00 0.00 0.00 45 I14_AR3 ActiveIntronRegion 0 1.73 3.89 0.21 26.13 1.25 0.21 1.18 9.48 5.88 12.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.29 4.84 14.12 0.00 0.00 0.00 46 ER15a ExonRegion 0 31.95 6.69 7.95 70.11 18.67 11.00 6.72 65.55 30.70 209.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.69 34.80 36.80 0.95 5.54 2.18 47 E15_Da NovelBoundary 0 6.59 3.35 0.00 11.22 0.00 0.00 0.00 22.02 8.54 12.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 4.14 15.66 0.00 0.00 0.00 48 E15a_E16a KnownJunction 0 28.60 9.54 5.17 84.24 16.21 14.03 3.62 66.70 25.17 233.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.23 33.98 25.69 2.35 14.45 0.00 49 I15 Intron 0 3.39 2.75 1.43 11.71 1.33 1.31 1.13 18.98 6.68 25.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.93 4.19 12.04 0.16 0.59 0.21 50 I15_SR1 SilentIntronRegion 0 3.39 2.75 1.43 11.72 1.33 1.31 1.13 18.99 6.69 25.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.94 4.20 12.05 0.16 0.59 0.21 51 ER16a ExonRegion 0 26.42 8.35 15.35 99.04 14.45 8.62 6.12 73.64 25.54 189.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39.25 51.53 30.56 1.12 3.22 1.50 52 E17_Aa NovelBoundary 0 0.00 2.76 2.37 3.30 0.00 0.00 2.12 9.90 6.39 9.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.63 0.00 5.82 0.00 0.00 0.00 53 ER17a ExonRegion 0 2.31 2.64 8.84 46.39 0.00 2.86 0.59 24.61 23.12 74.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53.27 20.11 40.95 0.00 0.16 2.29 54 E17a_E18a KnownJunction 0 0.00 6.38 6.83 52.71 0.00 4.60 3.84 33.93 30.03 84.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54.93 22.31 41.87 0.00 2.51 0.00 55 ER18a ExonRegion 0 3.83 7.50 7.52 47.20 1.52 2.97 1.32 33.20 33.23 82.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53.37 22.76 37.70 0.00 1.52 0.87 56 E18a_E19a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57 E18a_E20a KnownJunction 0 0.00 15.13 13.72 66.09 8.15 13.29 2.25 28.83 32.52 101.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43.98 31.06 43.08 0.00 5.63 0.00 58 ER19a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59 ER20a ExonRegion 0 6.03 6.63 7.73 71.32 3.61 2.96 1.52 34.67 32.40 93.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50.19 28.38 39.19 0.00 1.89 0.61 60 E20_Da NovelBoundary 0 0.00 9.80 0.00 21.31 3.31 2.67 1.77 2.55 4.08 25.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.84 4.61 3.13 0.00 0.00 0.00 61 E20a_E21a KnownJunction 0 0.00 0.00 0.00 0.00 6.71 0.00 0.00 4.39 1.62 6.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.71 0.00 2.62 0.00 0.00 0.00 62 E20a_E22a KnownJunction 0 6.67 6.05 12.06 61.60 3.90 10.56 0.00 43.66 25.29 57.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38.10 33.70 44.23 0.00 0.00 0.00 63 I20_AR1 ActiveIntronRegion 0 2.22 4.94 0.99 20.04 0.73 0.00 0.73 9.25 5.43 19.01 0.52 0.00 0.00 0.00 0.00 0.00 0.00 32.75 9.12 9.74 0.00 0.57 0.00 64 I20_SR1 SilentIntronRegion 0 2.89 2.27 0.77 23.31 0.56 0.93 0.74 4.16 2.34 10.43 0.04 0.00 0.00 0.00 0.00 0.00 0.00 5.99 2.98 4.66 0.00 0.04 0.00 65 ER21a ExonRegion 0 1.91 0.00 0.00 1.82 1.08 0.00 0.00 5.97 3.15 7.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.22 0.30 2.08 0.00 0.00 0.00 66 E21a_E22a KnownJunction 0 3.26 0.00 0.00 3.23 0.00 0.00 0.00 9.12 3.27 8.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.03 0.00 3.26 0.00 0.00 0.00 67 E22_Aa NovelBoundary 0 3.26 2.70 1.21 9.19 0.00 0.00 0.00 0.00 0.00 8.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.77 17.88 0.00 0.00 0.00 0.00 68 ER22a ExonRegion 0 9.03 8.36 8.19 56.37 10.06 5.63 2.34 39.15 29.12 73.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35.62 22.74 32.48 0.91 0.67 0.94 69 E22a_E23a KnownJunction 0 3.33 12.17 13.57 64.63 16.98 10.45 3.97 35.32 34.49 80.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43.98 12.89 44.29 2.84 0.00 0.00 70 ER23a ExonRegion 0 7.47 4.96 11.78 71.86 6.02 4.00 1.66 42.59 36.16 93.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38.60 36.27 34.78 0.24 0.97 0.00 71 E23_Da KnownBoundary 0 3.26 0.00 8.69 15.95 0.00 0.00 2.16 11.71 3.70 25.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.58 0.00 5.18 0.00 0.00 0.00 72 ER23b ExonRegion 0 6.50 12.68 3.16 43.67 7.34 7.12 2.53 35.88 41.31 107.74 0.01 0.20 0.25 0.12 0.20 0.04 0.07 24.02 20.00 30.18 0.07 0.95 0.33