Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ISLR Gene 0 140.92 2.47 23.61 20.31 14.33 17.71 14.39 64.80 30.76 34.47 1.09 1.16 1.58 0.09 0.00 0.00 0.20 19.60 10.36 28.12 342.84 338.53 236.47 2 249842 Transcript 0 24.62 0.65 5.09 3.65 3.75 4.48 1.40 6.68 13.92 4.39 0.00 0.00 0.00 0.00 0.00 0.00 0.56 7.92 1.68 6.98 162.69 126.66 97.85 3 422030 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 395118 Transcript 0 89.91 2.37 4.40 0.68 0.45 2.14 4.19 16.59 3.29 6.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.05 6.90 10.62 59.05 63.97 46.02 5 IG29_SR2 SilentIntergenicRegion 0 0.48 1.22 0.00 0.00 0.18 0.00 1.36 0.17 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.04 0.00 4.40 0.00 0.00 0.00 6 ER1a ExonRegion 0 1.97 1.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.23 1.26 0.00 0.00 7 ER1b ExonRegion 0 50.53 1.41 2.26 2.77 5.23 9.68 9.62 4.27 1.66 2.89 0.00 0.00 0.00 0.00 0.00 0.00 0.72 9.40 2.70 16.01 81.18 102.80 90.20 8 E1_Da KnownBoundary 0 80.31 3.29 1.57 7.33 0.00 10.28 7.91 18.24 6.25 6.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.68 0.00 19.56 164.08 176.96 128.81 9 E1a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER1c ExonRegion 0 34.33 0.65 4.86 5.71 2.60 4.82 2.48 10.34 13.12 5.52 0.00 0.00 0.00 0.00 0.00 0.00 1.68 13.60 5.03 14.72 198.86 180.12 137.93 11 E1b_E3a KnownJunction 0 37.56 0.00 10.41 5.23 8.66 8.63 1.72 9.69 28.65 7.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.16 0.00 0.00 287.94 199.87 155.62 12 I1_AR1 ActiveIntronRegion 0 0.00 0.72 1.44 0.00 0.00 0.00 2.49 0.26 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.54 4.90 19.54 0.93 0.48 1.24 13 ER2a ExonRegion 0 145.07 4.75 6.96 1.35 0.89 4.28 8.39 18.06 3.48 10.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.57 13.80 21.23 90.24 116.80 72.74 14 E2_Da NovelBoundary 0 0.00 3.35 0.00 0.00 0.00 0.00 4.02 0.00 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.24 20.80 40.20 3.03 0.00 0.00 15 E2a_E3a KnownJunction 0 34.75 0.00 1.83 0.00 0.00 0.00 0.00 15.12 3.10 3.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 27.86 11.14 19.29 16 I2 Intron 0 2.49 2.39 5.01 0.00 0.00 0.00 2.60 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.96 15.00 31.72 2.59 0.00 1.15 17 I2_SR1 SilentIntronRegion 0 2.51 2.41 5.05 0.00 0.00 0.00 2.62 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.05 15.11 31.95 2.61 0.00 1.16 18 E3_Aa NovelBoundary 0 3.78 2.96 4.41 0.00 0.00 0.00 2.16 1.64 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.58 4.24 43.91 2.97 0.00 0.00 19 ER3a ExonRegion 0 57.35 2.83 29.43 18.43 5.63 22.15 11.02 74.85 43.83 36.48 1.76 1.83 2.57 0.01 0.00 0.00 0.16 29.80 14.06 34.68 467.64 445.95 264.62 20 E3_Ab KnownBoundary 0 493.27 8.16 34.83 33.46 7.81 31.35 8.66 126.63 61.14 79.40 2.11 0.00 0.00 0.00 0.00 0.00 4.49 45.39 34.07 52.60 731.88 645.71 406.24 21 ER3b ExonRegion 0 115.65 1.67 26.70 22.67 14.10 16.61 12.27 72.80 33.30 44.46 1.73 1.19 1.24 0.24 0.00 0.00 0.11 21.46 7.86 29.91 434.84 352.86 281.30 22 E3_Da KnownBoundary 0 238.19 2.43 19.78 33.90 47.03 33.84 35.11 109.22 32.44 36.08 2.68 0.00 0.00 0.00 0.00 0.00 0.00 6.59 20.61 25.76 448.69 377.50 347.43 23 ER3c ExonRegion 0 270.86 3.50 30.32 30.85 27.59 24.74 24.21 88.48 39.17 40.48 0.64 1.59 2.64 0.00 0.00 0.00 0.00 17.87 14.61 30.05 319.46 418.74 264.30 24 IG30 Intergenic 0 0.86 1.86 0.79 0.00 0.20 0.33 5.02 0.66 0.37 0.22 0.05 0.00 0.20 0.00 0.00 0.00 0.00 6.59 11.35 25.23 0.67 2.01 2.91 25 IG30_SR1 SilentIntergenicRegion 0 0.61 2.93 1.00 0.00 0.77 0.00 3.01 1.45 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.41 8.10 22.42 1.69 4.61 0.85 26 IG30_AR1 ActiveIntergenicRegion 0 0.00 0.00 0.61 0.00 0.00 0.00 6.12 0.43 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.66 8.16 36.97 4.41 6.90 0.00 27 IG30_AR2 ActiveIntergenicRegion 0 1.80 1.44 1.04 0.00 0.00 0.78 3.36 0.37 0.36 0.49 0.27 0.00 0.00 0.00 0.00 0.00 0.00 7.97 17.96 24.09 1.07 4.10 2.92 28 IG30_SR2 SilentIntergenicRegion 0 0.68 1.87 0.71 0.00 0.19 0.26 5.68 0.63 0.26 0.18 0.00 0.00 0.27 0.00 0.00 0.00 0.00 6.64 10.16 25.78 0.39 1.11 3.23