Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PKM2 Gene 0 472.18 961.05 1284.07 479.37 409.26 553.16 640.79 782.19 453.94 1004.26 6137.05 2495.60 1353.17 3744.68 3367.66 3582.94 4583.15 2442.90 1841.91 1051.52 3542.67 2850.45 2378.67 2 335181 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 319622 Transcript 0 1.11 4.03 7.85 3.64 4.43 10.83 2.26 6.51 4.72 5.71 18.57 0.84 2.94 14.81 6.86 15.18 20.57 27.95 24.59 9.25 11.49 5.61 9.16 4 438234 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 389093 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 434220 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 419739 Transcript 0 1.01 3.76 4.48 2.70 3.31 3.48 4.02 1.72 2.39 2.54 7.85 9.43 1.68 4.73 5.81 6.39 9.45 11.55 4.55 7.85 1.40 2.92 6.37 8 449901 Transcript 0 0.00 0.00 1.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.63 6.00 0.00 0.00 4.45 0.00 8.98 0.00 0.00 0.00 0.00 0.00 0.00 9 327974 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 IG6_SR1 SilentIntergenicRegion 0 4.95 19.44 6.26 2.79 8.46 18.54 7.27 15.21 5.96 5.50 4.72 13.35 3.18 4.12 1.02 2.15 0.57 18.73 13.87 4.48 3.32 3.23 3.88 11 IG6_AR1 ActiveIntergenicRegion 0 2.14 10.69 4.26 2.42 2.79 15.20 3.82 7.31 6.27 7.62 3.49 3.56 2.25 2.59 1.56 3.05 4.58 14.52 9.44 7.28 8.28 5.64 4.04 12 ER1a ExonRegion 0 48.91 72.81 22.18 10.84 25.21 84.05 66.80 16.25 17.63 20.57 138.16 1.10 5.91 98.34 208.06 158.31 113.47 90.44 345.76 54.90 148.84 148.82 180.74 13 E1_Ab KnownBoundary 1 727.98 804.53 248.34 140.64 230.39 842.19 839.00 187.54 174.19 239.80 1511.22 52.22 87.82 1094.77 2357.63 1941.54 1431.79 1575.10 4618.20 578.13 1640.93 1879.01 2263.83 14 ER1b ExonRegion 1 667.22 848.94 525.88 176.14 321.85 1151.40 1228.60 324.67 230.10 516.91 4516.22 191.67 125.74 4876.86 3891.64 3837.54 4997.91 1357.50 3497.18 1048.96 2747.46 2692.10 3564.73 15 E1_Da KnownBoundary 0 3.04 19.27 21.20 10.95 3.65 65.53 15.02 12.40 6.19 10.40 19.48 0.00 6.49 11.77 28.93 42.81 25.15 14.80 22.21 17.71 11.61 5.45 10.84 16 E1a_E3a KnownJunction 1 372.14 627.98 830.60 226.94 223.85 964.56 991.06 413.53 214.61 715.71 2476.63 353.37 143.01 1307.03 1743.62 2185.49 4366.33 1166.66 1048.03 1045.05 1678.68 1231.96 1888.23 17 ER1c ExonRegion 0 2.21 8.06 11.67 4.05 4.52 21.65 4.53 10.89 6.28 11.42 30.40 1.68 5.89 17.49 13.72 26.08 22.06 38.77 26.22 15.95 13.65 8.53 9.61 18 E1_Ac KnownBoundary 0 3.56 15.00 12.83 11.19 12.39 9.94 1.81 22.59 10.88 14.88 58.07 18.91 6.17 49.21 19.66 58.62 64.24 63.71 33.41 19.69 25.51 14.14 28.00 19 ER1d ExonRegion 0 0.85 8.86 16.72 9.48 8.21 8.77 1.54 10.75 10.43 13.43 56.21 12.14 6.47 45.38 41.98 45.16 35.89 43.37 37.38 24.04 30.90 27.68 15.26 20 E1b_E3a KnownJunction 0 0.00 0.00 4.02 3.23 4.33 0.00 0.00 2.14 3.15 0.00 6.74 0.00 0.00 12.13 0.00 4.27 19.07 17.12 22.97 2.56 9.33 2.69 8.71 21 E1c_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.59 3.74 2.57 0.00 2.81 0.00 0.00 0.00 22 ER1e ExonRegion 0 0.00 2.03 1.84 0.00 0.00 1.83 0.00 0.00 0.00 4.59 7.73 8.66 0.00 4.87 2.90 2.97 6.60 6.47 4.78 5.85 0.00 4.69 4.40 23 ER2a ExonRegion 0 3.02 9.25 11.60 8.11 9.94 8.60 12.07 5.16 7.18 3.03 15.83 19.64 5.03 9.32 14.54 12.60 18.00 25.60 8.87 14.89 4.20 4.07 14.72 24 E2_Ab KnownBoundary 0 14.97 27.30 24.45 15.98 3.82 19.31 25.84 16.96 10.65 5.88 45.33 55.82 13.64 16.83 17.80 32.38 57.50 60.48 22.49 22.56 11.43 8.57 23.13 25 ER2b ExonRegion 0 5.45 8.07 13.33 10.16 3.41 10.61 8.14 7.44 9.06 2.61 42.29 30.31 10.94 11.81 12.13 15.67 38.31 27.83 16.60 10.90 14.82 8.27 8.19 26 E2a_E3a KnownJunction 0 0.00 0.00 5.65 9.46 0.00 2.73 0.00 6.49 10.68 2.77 32.27 11.70 0.00 4.59 4.45 8.72 23.47 13.14 13.74 5.50 14.21 8.33 0.00 27 E3_Ab NovelBoundary 0 92.31 122.41 409.57 111.41 48.98 137.31 93.85 176.54 140.86 306.04 822.52 360.27 164.11 305.14 302.49 435.01 676.76 374.53 356.06 170.34 609.19 244.51 226.72 28 ER3a ExonRegion 1 257.16 456.10 667.13 175.33 175.64 694.09 670.59 326.92 204.32 581.56 2442.63 488.30 234.50 1569.36 1153.46 1799.62 3624.15 902.63 931.49 807.29 1663.96 1079.71 1507.13 29 ER3b ExonRegion 1 135.24 231.24 804.18 260.59 82.47 175.49 144.69 498.29 347.05 782.94 6949.38 848.36 518.65 2769.15 2205.44 2484.37 5022.56 2138.02 3902.18 1066.55 3961.58 2071.05 2194.07 30 E3_Da KnownBoundary 1 186.55 323.63 1529.13 551.54 106.88 296.59 246.78 935.87 555.75 1308.15 9311.36 1565.61 824.30 7631.56 5618.53 6810.52 7440.57 4534.71 6502.21 2097.19 4723.50 5919.07 5904.05 31 E3a_E7b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 ER3c ExonRegion 0 140.42 336.01 1376.58 480.24 151.68 313.89 222.24 846.55 535.65 1194.98 8343.99 1519.27 861.49 8249.00 6330.20 7075.10 6193.61 4497.85 4976.08 1947.59 4352.83 4888.41 5765.38 33 E3b_E4a KnownJunction 0 182.85 451.83 1481.76 528.50 290.32 421.01 307.20 872.29 574.85 1189.82 7300.16 2129.19 1143.76 7703.14 6326.12 7054.30 5370.07 4300.33 3184.75 1965.52 4000.15 3829.97 5134.08 34 E3b_E5a KnownJunction 0 0.00 0.00 1.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.63 6.00 0.00 0.00 4.45 0.00 8.98 0.00 0.00 0.00 0.00 0.00 0.00 35 E4a_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 ER4a ExonRegion 0 156.86 390.33 1298.83 419.31 345.62 461.61 297.60 752.17 508.66 1082.68 6672.69 2202.01 1216.02 6211.26 4965.49 5829.66 4985.27 3824.74 2608.46 1680.85 3880.12 3091.13 4215.39 37 ER4b ExonRegion 0 228.13 535.00 1188.83 376.10 880.32 1088.81 897.02 621.94 483.81 1063.69 5721.15 2509.86 1112.04 3567.38 2982.84 3435.50 5053.27 2520.76 1847.98 1314.37 4109.41 2551.89 2265.86 38 E4b_E5a KnownJunction 0 247.38 972.26 1435.40 515.35 1696.78 2459.49 2202.39 803.98 574.70 1256.60 7348.12 2428.69 1034.02 4884.07 3246.93 3558.04 5784.10 2474.06 2222.28 1569.61 4606.00 2802.96 2272.79 39 ER5a ExonRegion 0 424.89 1420.62 1523.41 493.14 808.74 1335.80 1670.97 912.02 630.08 1381.59 9525.51 2575.25 1182.54 5369.07 3787.06 3903.60 7236.71 2565.22 2402.91 1670.41 5738.86 3786.94 2510.22 40 E5_Da KnownBoundary 0 877.93 1833.09 1614.70 517.52 402.46 695.34 992.25 975.06 702.45 1418.23 8345.17 3246.61 1570.68 6143.59 4097.92 4220.00 7268.06 2884.24 2490.61 1827.52 6110.71 3703.46 2655.30 41 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 ER5b ExonRegion 0 695.66 1515.39 1428.46 456.48 342.90 402.09 602.18 910.66 598.99 1313.97 8486.07 3425.33 1419.44 6269.59 4273.55 4244.49 7044.44 2656.11 2214.73 1736.66 5588.83 3700.64 2843.50 43 E5b_E6a KnownJunction 0 941.57 1881.70 1540.63 556.74 507.90 445.25 733.90 1004.51 594.15 1393.65 8645.98 4180.96 1770.34 6789.25 5112.57 4508.73 7136.13 3150.04 2371.55 1702.82 5514.37 4203.37 3142.47 44 E6_Ab NovelBoundary 1 521.28 916.94 892.49 363.32 125.04 197.44 382.71 539.59 355.41 775.07 3370.96 1579.11 386.66 1843.67 1731.38 2003.75 3214.02 1868.59 943.37 713.32 2314.67 2009.81 1126.45 45 ER6a ExonRegion 0 790.82 1642.12 1500.82 535.42 391.04 386.54 642.88 958.55 583.94 1354.49 8343.91 3779.01 1427.44 5841.49 4446.58 4311.49 6944.61 3289.39 2122.13 1546.35 5294.73 3982.80 2834.07 46 ER6b ExonRegion 0 995.07 2261.52 2122.70 791.55 817.31 831.64 1228.64 1262.80 751.89 1650.01 10307.88 4625.52 1814.26 6737.98 5009.21 5762.88 7943.37 4050.62 2657.33 1951.45 6237.59 5147.24 3691.09 47 E6a_E7a KnownJunction 0 1128.87 2592.83 3292.43 1289.55 1094.14 1091.19 1521.89 1803.73 985.29 2077.99 11181.62 6404.24 2894.94 7664.88 6256.77 7259.55 8344.54 4738.62 3080.09 2415.17 6283.93 6319.91 4704.79 48 ER7a ExonRegion 0 758.77 2188.13 3190.28 1205.50 885.67 913.89 1356.11 1672.94 924.63 2065.16 11480.38 5481.88 2503.26 8157.56 6303.44 7182.20 8626.56 4820.82 2894.60 2362.12 6642.20 6096.67 4465.11 49 E7_Ab KnownBoundary 0 777.99 2282.36 3110.21 1219.06 967.40 878.81 1652.61 1721.41 992.81 2241.42 11813.99 5713.86 2643.01 8094.69 6628.86 7171.96 9531.64 4667.03 2992.09 2517.76 7022.97 6569.62 4584.00 50 ER7b ExonRegion 0 1246.57 3045.61 3188.24 1248.38 1267.95 1218.53 1762.11 1890.44 1045.80 2277.88 14200.84 7388.46 3984.23 8835.40 7189.90 8719.72 10291.73 5442.75 4081.03 2476.43 7485.41 7354.32 5574.90 51 E7a_E8a KnownJunction 0 1878.85 3512.07 3970.97 1584.15 1396.10 1363.87 2038.37 2216.48 1184.68 2713.92 14498.36 9739.97 4345.98 8219.18 7835.73 9254.84 10539.49 6137.38 4438.62 2561.74 7407.72 8196.23 6097.49 52 ER8a ExonRegion 0 1075.86 2603.61 3562.20 1356.12 1072.67 1238.41 1445.66 2092.46 1134.70 2416.85 15124.34 8791.11 4968.51 8773.94 7838.92 9595.30 11285.48 5796.78 4434.24 2406.64 8212.29 7992.72 6197.79 53 E8a_E9a KnownJunction 0 1423.96 2668.60 3826.83 1460.75 1191.43 1467.05 1690.55 2118.72 1086.51 2524.38 18030.51 10981.63 7413.47 9681.02 9594.07 14685.55 13004.38 7638.28 6101.92 2656.91 8957.90 10140.82 9413.50 54 ER9a ExonRegion 0 866.93 1813.37 2794.50 1031.22 827.33 1080.96 1289.65 1704.45 946.24 2069.29 14195.30 7002.67 3584.90 7309.04 7535.50 8262.57 10074.68 5638.16 3526.05 1945.98 7907.28 6550.72 5254.29 55 E9a_E10a KnownJunction 0 219.67 1347.52 645.13 669.78 243.29 736.05 508.27 1263.40 788.10 1414.60 450.17 127.54 72.72 355.47 307.81 467.23 433.75 3467.04 1457.36 1242.68 722.05 619.01 409.91 56 E9a_E11a KnownJunction 0 1264.96 806.44 2159.56 525.04 478.78 387.05 1007.35 765.99 278.85 944.36 11984.14 5130.62 3104.34 7575.70 8028.58 8257.15 8053.66 3091.97 3380.71 762.98 6532.96 6818.11 5226.44 57 ER10a ExonRegion 0 176.86 926.05 704.85 555.92 262.53 717.14 422.69 1174.81 765.05 1378.48 769.50 239.11 194.06 516.58 362.60 483.25 707.74 2610.22 837.50 1194.40 896.07 501.17 406.26 58 E10a_E12a KnownJunction 0 281.68 1396.20 891.93 699.74 312.05 916.23 409.43 1539.00 926.81 1633.82 397.05 92.28 94.96 253.93 180.73 560.96 575.03 3568.51 1484.28 1330.82 778.27 601.99 486.06 59 I10 Intron 0 43.34 68.80 92.88 117.79 45.26 61.81 53.55 85.17 58.05 102.16 379.31 127.21 84.77 225.58 142.47 267.25 287.57 258.78 155.15 129.62 167.25 162.44 155.37 60 I10_AR1 ActiveIntronRegion 0 43.56 69.14 93.34 118.38 45.48 62.12 53.81 85.60 58.34 102.67 381.20 127.82 85.18 226.70 143.19 268.57 289.01 260.07 155.93 130.27 168.07 163.25 156.13 61 ER11a ExonRegion 0 852.96 528.07 1934.38 445.12 363.20 351.73 580.40 629.69 260.47 849.49 9872.06 3525.74 2409.47 5986.30 6323.67 5780.11 7084.83 2477.09 1997.34 702.15 5455.01 4051.42 3606.34 62 E11a_E12a KnownJunction 0 861.78 432.62 2247.26 436.84 494.82 411.24 570.58 724.18 280.09 862.97 9420.07 3314.13 2010.10 5694.07 6112.14 7305.26 6894.24 2937.14 2838.01 717.53 5360.98 5415.18 4857.76 63 I11 Intron 0 80.03 118.19 132.70 145.86 66.87 77.45 69.06 84.02 57.95 94.24 276.50 98.19 50.87 191.09 134.10 191.28 195.69 214.15 127.94 114.73 120.17 146.39 165.18 64 I11_AR1 ActiveIntronRegion 0 80.11 118.32 132.84 146.02 66.94 77.54 69.14 84.11 58.02 94.35 276.80 98.30 50.93 191.30 134.25 191.50 195.91 214.39 128.08 114.86 120.30 146.56 165.36 65 E12_Aa NovelBoundary 0 139.65 107.35 237.22 188.32 70.80 155.54 87.93 154.60 89.35 141.99 442.11 73.37 53.89 204.25 249.58 302.23 316.13 362.80 342.03 154.49 205.78 200.72 300.22 66 ER12a ExonRegion 0 519.36 1038.80 2171.98 793.48 454.64 785.28 696.46 1353.95 781.12 1761.42 10143.09 2680.15 1851.63 5932.93 6496.35 5572.26 7091.30 4349.95 2484.08 1539.71 6109.01 3843.57 3688.34 67 E12a_E13a KnownJunction 0 519.43 1182.75 1693.32 582.51 609.42 950.70 903.39 1145.31 663.77 1647.50 10408.32 2170.61 1632.36 5580.76 5676.01 4191.04 7504.62 2792.34 2047.96 1371.92 5666.71 2959.90 2703.02 68 ER13a ExonRegion 0 228.80 255.22 336.05 137.58 92.85 202.63 198.11 216.01 121.69 311.73 1702.62 442.67 297.95 986.09 1160.09 989.60 1236.34 714.14 451.74 251.91 1012.58 691.62 631.95 69 ER13b ExonRegion 0 90.30 79.99 15.93 13.63 41.92 31.17 32.22 1.15 6.59 14.15 144.97 281.42 196.98 176.49 394.57 134.74 185.95 49.27 114.67 19.86 71.99 65.98 119.42