Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC016525.1 Gene 0 270.44 8.32 7.80 14.52 125.84 22.86 25.70 19.77 13.84 6.97 453.22 150.20 231.17 244.79 183.32 229.20 196.68 16.90 7.88 11.46 8.04 11.17 16.36 2 501726 Transcript 0 96.43 9.54 4.56 6.96 54.21 11.86 15.98 8.44 8.19 4.20 244.77 75.55 118.71 117.45 96.53 121.68 121.28 13.09 8.27 12.40 7.02 5.69 13.78 3 500191 Transcript 0 106.05 3.86 2.76 7.91 56.19 14.68 12.34 5.83 8.07 2.23 207.27 95.44 130.68 115.69 65.19 109.75 71.58 8.96 4.24 6.09 4.57 7.99 8.28 4 502027 Transcript 0 299.84 4.90 5.33 13.39 214.26 26.43 29.69 22.05 14.88 4.84 549.27 218.39 324.93 283.85 182.16 244.69 233.17 10.90 4.91 8.14 4.71 10.72 16.44 5 IG27 Intergenic 0 4.30 4.58 3.82 5.77 4.94 3.07 5.15 4.28 4.91 2.98 7.56 5.09 4.01 7.38 7.79 8.22 6.94 10.74 6.19 6.67 6.83 7.64 11.27 6 IG27_AR1 ActiveIntergenicRegion 0 5.55 9.05 5.53 9.45 14.62 6.31 15.77 11.99 8.94 4.48 22.26 17.78 20.16 22.62 30.70 20.45 18.02 20.43 16.12 13.76 11.11 25.30 24.95 7 IG27_AR2 ActiveIntergenicRegion 0 3.70 3.56 0.00 3.75 0.00 0.00 2.32 0.00 1.54 6.31 4.83 0.00 18.76 6.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 IG27_AR3 ActiveIntergenicRegion 0 10.86 8.29 4.10 11.49 9.55 5.33 9.24 6.81 8.25 6.03 19.09 13.04 6.37 14.36 15.63 18.06 16.14 11.04 7.58 7.59 11.35 13.76 17.07 9 IG27_AR4 ActiveIntergenicRegion 0 5.01 1.64 1.63 6.11 7.54 3.76 3.63 5.22 2.34 1.02 17.79 0.70 1.38 6.74 6.09 11.37 9.91 12.69 8.04 5.17 9.03 7.44 13.33 10 ER1a ExonRegion 0 169.44 19.08 8.00 12.16 101.80 23.73 31.97 16.89 14.67 8.41 481.95 151.10 230.61 229.96 193.06 239.34 242.57 26.18 16.54 24.80 14.05 11.38 27.55 11 E1_Da NovelBoundary 0 188.11 8.95 6.45 16.71 94.91 12.10 15.63 5.63 0.00 5.96 167.83 180.96 176.12 205.84 127.20 156.88 113.14 0.00 17.32 0.00 0.00 8.51 11.35 12 E1a_E3b KnownJunction 0 23.41 0.00 1.12 1.76 6.62 0.00 0.00 0.00 1.71 0.00 7.58 0.00 6.82 4.94 0.00 4.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E1a_E4a NovelJunction 0 6.52 0.00 0.00 0.00 11.97 0.00 0.00 0.00 0.00 0.00 39.33 27.46 6.33 31.67 20.03 7.52 17.11 0.00 0.00 0.00 0.00 0.00 0.00 14 I1 Intron 0 159.01 3.29 4.40 10.78 77.29 16.05 18.42 15.16 10.72 4.64 406.88 159.61 294.32 255.17 127.05 224.01 203.69 19.59 6.61 9.67 8.00 9.03 17.02 15 I1_SR1 SilentIntronRegion 0 18.75 0.29 0.00 1.07 19.69 0.79 2.18 0.00 1.24 2.46 41.56 35.56 35.18 46.87 24.66 30.36 39.85 0.92 6.83 0.00 0.31 0.00 3.99 16 I1_AR1 ActiveIntronRegion 1 79.37 2.61 0.00 4.11 39.72 9.17 13.47 2.13 5.98 3.39 215.31 69.54 99.52 197.25 122.49 162.54 159.17 7.39 12.74 5.52 9.85 0.00 7.75 17 I1_SR2 SilentIntronRegion 1 136.76 3.42 3.94 8.37 65.12 10.69 19.72 9.07 8.75 4.35 278.23 132.80 197.77 197.27 102.06 163.00 150.06 11.36 5.31 10.09 8.03 6.42 12.12 18 I1_AR2 ActiveIntronRegion 0 224.57 4.09 4.56 11.78 74.83 15.74 17.15 19.60 12.31 3.73 434.98 165.39 355.30 285.05 139.63 257.60 212.31 22.71 5.08 8.50 6.86 11.77 26.78 19 I1_AR3 ActiveIntronRegion 1 180.96 3.39 4.90 10.34 93.65 26.13 16.77 26.79 14.92 8.03 603.39 141.79 347.45 334.16 139.74 293.99 317.71 41.11 5.84 12.59 6.43 8.85 26.19 20 I1_SR3 SilentIntronRegion 1 162.26 3.16 4.85 13.52 89.20 19.32 22.30 27.74 19.52 7.47 612.63 214.27 414.46 304.45 178.33 312.15 301.55 31.91 7.44 12.00 13.53 13.79 27.24 21 I1_AR4 ActiveIntronRegion 1 161.62 2.62 5.84 15.03 106.03 26.60 17.42 21.30 11.44 5.28 598.62 208.04 425.54 337.09 151.84 297.56 276.50 30.50 9.08 10.14 7.32 11.94 16.59 22 E2_Aa NovelBoundary 0 339.02 11.97 3.05 8.82 151.70 20.56 20.80 12.53 5.96 6.74 470.43 249.68 417.83 356.59 217.07 339.40 261.62 23.05 11.58 2.68 7.60 17.94 22.19 23 ER2a ExonRegion 0 155.38 9.02 4.95 12.10 108.01 21.46 26.16 14.46 13.58 5.64 448.58 186.81 239.40 225.55 120.32 199.08 166.94 19.18 7.99 13.29 6.49 13.14 15.01 24 E2_Da NovelBoundary 0 227.37 2.57 0.00 6.43 134.30 15.16 15.41 13.39 4.92 1.56 366.20 87.78 289.27 264.00 146.24 265.23 170.17 15.63 0.00 24.03 11.80 9.25 10.93 25 E2a_E3c KnownJunction 0 108.09 2.57 2.31 11.62 22.67 21.98 6.89 1.60 8.97 1.05 131.35 85.08 137.00 92.00 41.41 121.76 43.38 6.47 3.67 4.99 7.23 9.43 9.82 26 E3_Aa NovelBoundary 0 433.26 11.64 5.62 14.92 198.22 18.46 25.84 15.57 11.26 2.85 473.23 124.69 211.03 264.58 152.91 263.61 182.98 16.91 13.84 5.50 5.56 10.16 10.24 27 ER3a ExonRegion 0 299.84 4.90 5.33 13.39 214.26 26.43 29.69 22.05 14.88 4.84 549.27 218.39 324.93 283.85 182.16 244.69 233.17 10.90 4.91 8.14 4.71 10.72 16.44 28 E3_Ab KnownBoundary 0 404.37 6.71 11.41 13.62 279.88 46.05 51.36 26.25 16.17 6.34 479.02 218.77 205.18 310.85 224.49 264.63 248.62 19.52 0.00 11.44 0.00 8.02 21.68 29 ER3b ExonRegion 0 443.63 8.49 10.44 23.14 163.67 29.62 33.62 27.21 17.95 10.28 510.46 157.94 291.39 302.63 244.66 304.64 241.42 18.00 7.75 11.29 8.59 14.79 20.57 30 E3_Ac KnownBoundary 0 384.96 0.00 2.99 17.61 99.32 15.39 4.02 6.20 4.83 4.65 193.26 36.91 99.83 210.73 183.45 174.48 145.02 15.34 8.38 0.00 10.69 5.14 3.33 31 ER3c ExonRegion 1 294.28 2.21 5.44 7.57 41.96 11.71 11.26 15.72 7.59 5.78 259.63 38.26 49.71 197.13 152.90 151.32 125.84 16.68 6.53 3.80 9.40 3.10 5.87 32 E3_Da KnownBoundary 1 240.78 3.22 6.21 6.03 22.24 23.28 13.91 25.63 3.85 8.92 255.85 44.11 54.05 147.51 152.30 128.51 95.56 21.18 4.80 0.00 14.39 0.00 0.00 33 ER3d ExonRegion 1 252.76 3.05 10.92 8.91 50.94 17.59 9.41 19.10 6.57 5.85 311.31 37.27 78.83 191.63 184.96 179.26 129.42 11.28 4.40 2.49 7.56 3.79 6.26 34 E3_Db NovelBoundary 0 55.49 3.29 4.38 26.70 6.37 8.63 0.00 4.39 1.13 0.00 103.08 12.00 13.15 129.38 99.76 59.56 49.37 7.46 0.00 5.50 2.97 2.63 4.18 35 E3b_E4a KnownJunction 1 106.09 0.00 16.88 6.49 41.43 0.00 0.00 15.90 4.43 0.00 307.50 37.51 66.72 78.99 148.46 102.02 122.02 4.60 0.00 0.00 2.41 0.00 0.00 36 ER3e ExonRegion 1 99.39 1.06 14.21 5.34 36.71 5.87 3.97 17.08 4.74 1.79 314.52 31.52 99.43 126.23 164.56 101.53 134.28 7.46 0.00 1.70 7.32 0.25 2.35 37 I3 Intron 1 83.31 1.74 8.75 11.47 40.30 7.22 6.34 7.49 3.15 2.92 119.74 7.45 23.56 120.14 145.24 80.38 59.88 11.15 3.82 5.83 4.15 1.07 5.53 38 I3_AR1 ActiveIntronRegion 1 83.59 1.75 8.78 11.50 40.43 7.24 6.37 7.52 3.16 2.93 120.15 7.48 23.62 120.55 145.71 80.65 60.08 11.19 3.83 5.85 4.16 1.07 5.55 39 E4_Aa NovelBoundary 0 54.97 9.41 3.99 6.89 78.78 0.00 8.13 15.28 4.05 10.58 147.20 58.67 75.48 106.25 109.65 74.51 48.06 11.65 7.62 0.00 2.41 3.12 3.93 40 ER4a ExonRegion 0 161.99 2.87 10.04 10.65 76.67 6.85 4.82 14.86 10.71 2.82 337.82 90.38 120.86 144.88 184.33 115.89 105.39 5.69 2.92 4.48 6.27 7.74 4.14 41 ER4b ExonRegion 0 98.77 0.00 1.23 1.36 63.33 1.83 5.30 1.73 3.71 0.00 76.03 40.41 64.10 57.39 84.14 24.77 20.91 1.85 3.19 0.00 0.00 2.08 0.00 42 ER4c ExonRegion 0 54.68 0.00 1.02 0.00 37.91 0.61 3.97 1.44 1.65 0.00 41.88 14.43 15.63 29.50 33.85 8.42 4.40 1.23 1.06 0.00 0.00 1.39 0.00