Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC025918.1 Gene 0 31.88 18.47 8.00 16.02 15.67 9.64 21.52 5.64 5.06 5.92 6.47 15.48 25.46 8.02 18.43 21.44 18.15 10.51 11.80 20.19 8.25 4.48 14.97 2 433570 Transcript 0 9.56 6.40 3.32 4.92 4.51 3.05 7.33 1.87 1.84 2.96 2.15 5.47 9.68 2.66 6.44 6.34 5.92 4.62 3.57 6.40 2.46 1.39 4.74 3 ER1a ExonRegion 0 0.00 0.00 0.31 0.27 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 2.35 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 Ix_AR7 ActiveIntronRegion 0 14.00 0.34 6.78 3.08 3.22 0.31 1.78 6.93 2.80 1.39 0.17 10.17 30.68 1.59 17.61 20.80 11.92 0.00 0.00 0.00 13.37 3.16 12.13 5 Ix Intron 1 9.27 0.78 4.81 1.98 2.83 0.33 4.09 3.64 2.91 1.36 1.75 20.77 52.43 2.56 9.55 11.27 12.83 0.11 0.04 0.00 11.04 3.52 13.63 6 Ix_AR2 ActiveIntronRegion 0 15.50 0.40 6.51 3.67 4.53 0.31 5.89 7.36 5.27 2.96 2.30 23.44 112.09 4.50 11.56 19.31 14.64 0.46 0.00 0.00 20.92 5.18 23.05 7 Ix_SR2 SilentIntronRegion 0 10.71 2.39 6.85 4.84 4.49 0.97 5.75 5.35 2.79 2.42 1.61 25.56 69.60 1.80 10.64 14.21 3.98 0.00 0.00 0.00 9.73 5.21 8.02 8 Ix_AR1 ActiveIntronRegion 0 15.57 3.11 8.35 2.01 4.66 0.10 8.30 5.33 0.79 4.24 3.45 24.99 73.37 3.41 25.16 13.50 6.88 0.00 0.00 0.00 17.22 2.95 18.92 9 Ix_SR1 SilentIntronRegion 0 10.71 0.76 7.19 1.04 1.52 0.00 0.59 4.00 3.93 0.20 3.27 14.03 24.65 0.55 15.59 12.39 15.54 1.03 0.00 0.00 12.10 3.10 11.58 10 Ix Intron 0 12.03 1.44 7.52 2.89 2.66 0.00 1.13 3.66 0.78 0.49 0.00 2.03 3.88 1.66 7.27 8.02 12.66 0.00 0.00 0.00 4.06 2.37 5.84 11 Ix_SR1 SilentIntronRegion 0 12.09 1.45 7.57 2.90 2.68 0.00 1.13 3.68 0.79 0.49 0.00 2.04 3.90 1.67 7.31 8.07 12.72 0.00 0.00 0.00 4.09 2.38 5.87 12 Ix_AR1 ActiveIntronRegion 0 11.99 1.15 6.72 3.45 4.29 0.00 3.50 3.41 2.96 2.74 2.01 20.06 51.76 2.96 9.62 13.19 13.41 0.52 0.00 0.00 13.11 3.54 12.48 13 Ix_AR5 ActiveIntronRegion 0 10.58 1.71 5.55 0.99 6.80 0.49 3.38 4.36 1.24 1.32 0.26 10.17 37.73 2.48 13.96 8.78 7.60 0.00 0.00 0.00 13.41 1.60 9.10 14 Ix_AR3 ActiveIntronRegion 0 2.74 2.03 4.61 3.37 0.00 0.00 5.30 6.91 2.47 4.05 1.93 7.64 40.00 2.01 30.21 7.69 35.14 0.00 0.00 0.00 15.69 4.17 5.36 15 Ix_AR2 ActiveIntronRegion 0 2.12 0.00 1.93 1.36 0.00 0.00 4.73 5.93 2.47 1.31 1.93 8.04 42.21 1.62 17.82 0.85 33.01 0.00 0.00 0.00 17.31 4.17 0.00 16 Ix_SR4 SilentIntronRegion 0 11.14 0.72 3.57 1.56 4.96 0.31 2.21 1.52 2.08 0.98 1.14 9.81 26.33 3.43 15.72 15.93 8.97 0.00 0.00 0.22 13.98 4.06 13.76 17 Ix_AR4 ActiveIntronRegion 0 21.04 0.73 7.64 2.46 5.01 0.40 3.84 3.23 2.47 0.74 1.27 3.91 37.06 5.94 18.38 17.31 8.65 0.00 0.00 0.00 13.10 2.66 14.14 18 Ix_AR3 ActiveIntronRegion 0 30.51 1.69 1.23 0.00 6.02 0.00 2.21 0.00 1.24 0.00 1.93 8.66 18.76 2.17 17.41 14.86 5.50 0.00 0.00 0.00 8.63 3.82 12.73 19 Ix_SR3 SilentIntronRegion 0 19.94 0.00 0.47 0.00 5.20 0.00 3.36 0.00 0.95 0.00 0.00 4.08 10.37 0.62 9.71 2.29 2.29 0.00 0.00 0.00 10.13 1.84 11.75 20 Ix_SR2 SilentIntronRegion 0 15.36 1.26 3.74 2.53 2.22 1.14 4.67 1.62 3.05 2.65 1.20 9.24 36.66 3.12 7.22 6.23 6.16 0.00 0.00 0.00 6.84 1.73 4.87 21 E2_Aa NovelBoundary 0 0.00 0.00 1.83 2.76 29.63 0.00 0.00 0.00 1.79 2.74 7.53 0.00 0.00 4.71 0.00 3.67 9.54 0.00 0.00 3.26 23.78 3.00 11.61 22 ER2a ExonRegion 0 0.00 3.06 0.86 0.97 0.00 2.78 4.01 0.00 0.00 1.62 0.00 5.40 11.24 1.93 11.20 1.38 1.67 0.00 1.61 2.15 1.11 1.05 4.45 23 E2_Da NovelBoundary 0 0.00 5.66 13.66 9.46 3.82 2.56 11.70 7.64 13.60 2.85 0.00 5.85 12.82 4.65 4.45 4.19 0.00 7.46 0.00 5.75 0.00 0.00 7.17 24 E2a_E3a KnownJunction 0 0.00 0.00 1.66 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 4.39 1.95 0.00 0.00 0.00 0.00 0.00 25 Ix_AR3 ActiveIntronRegion 0 11.21 3.73 8.15 9.80 12.35 4.23 9.29 3.94 2.34 12.88 3.60 2.97 16.82 3.70 12.59 6.50 5.05 4.69 0.77 1.22 5.77 6.95 5.66 26 Ix_AR2 ActiveIntronRegion 0 2.12 2.03 13.01 10.12 4.97 0.52 4.98 4.20 7.35 12.78 12.06 4.33 23.45 6.81 5.66 15.43 8.80 8.27 1.21 3.85 10.07 6.55 8.53 27 Ix_AR1 ActiveIntronRegion 0 2.19 0.66 2.31 2.96 5.31 4.93 16.16 2.46 2.05 2.63 2.06 2.34 9.07 3.96 2.00 4.95 1.25 3.74 0.00 0.50 3.33 0.99 7.18 28 Ix_SR2 SilentIntronRegion 0 5.05 6.64 8.89 6.27 6.85 4.81 14.90 10.58 3.98 9.66 2.69 3.16 4.15 4.55 8.83 7.65 6.70 15.05 2.80 18.61 1.73 0.43 2.93 29 Ix_SR1 SilentIntronRegion 0 6.24 5.11 4.59 2.88 4.38 6.01 16.34 10.69 4.62 10.82 3.17 6.23 6.09 5.80 5.98 8.44 7.21 13.75 4.87 25.09 2.65 1.14 4.17 30 Ix_SR1 SilentIntronRegion 0 4.89 3.05 2.74 1.38 4.01 3.45 14.65 4.48 2.26 8.74 2.72 7.71 6.27 3.06 7.44 9.23 8.89 14.12 5.15 15.47 3.79 1.70 3.51 31 I2 Intron 0 8.05 6.08 4.16 3.02 6.20 3.22 18.19 5.41 3.93 7.44 5.29 14.91 21.21 10.39 14.09 10.93 11.42 11.01 3.57 19.49 8.97 5.46 8.74 32 I2_SR1 SilentIntronRegion 0 12.35 4.87 3.61 2.70 5.56 2.63 21.37 10.00 4.25 6.28 3.88 15.30 16.34 14.22 18.17 9.07 16.84 4.85 0.91 23.25 12.01 10.22 11.09 33 I2_AR1 ActiveIntronRegion 0 10.38 9.63 4.48 3.30 7.02 3.52 19.08 5.74 3.69 8.87 4.60 18.34 19.86 14.43 21.77 13.87 15.69 11.90 3.53 22.10 10.20 7.10 12.44 34 I2_SR2 SilentIntronRegion 0 8.80 4.01 3.77 1.47 4.31 1.47 14.79 4.34 2.20 6.83 6.99 10.19 19.74 8.52 13.92 16.04 13.32 13.85 5.41 21.06 11.55 2.27 8.41 35 I2_AR2 ActiveIntronRegion 0 8.06 3.52 6.42 1.83 4.18 3.87 15.14 2.77 4.15 7.67 4.49 13.81 15.51 8.08 13.92 12.68 11.19 16.33 3.81 22.18 14.19 5.73 7.75 36 I2_AR3 ActiveIntronRegion 0 8.47 8.13 6.74 2.73 5.35 3.67 24.23 7.95 6.30 8.26 8.89 6.06 9.85 4.39 10.44 17.83 9.90 11.64 4.46 22.55 14.32 3.96 14.68 37 I2_AR4 ActiveIntronRegion 0 6.94 8.13 6.26 2.73 6.39 2.85 25.82 10.37 6.04 10.39 6.66 4.33 13.81 7.13 15.80 26.75 11.55 13.86 5.49 24.94 11.88 1.39 8.65 38 I2_AR5 ActiveIntronRegion 0 14.20 3.35 7.31 2.73 13.98 8.16 22.12 9.70 6.53 10.36 4.43 17.04 28.14 10.64 21.81 36.24 13.63 25.57 9.15 27.32 13.65 4.17 10.14 39 I2_SR3 SilentIntronRegion 0 14.51 4.07 6.13 2.92 16.05 14.67 20.81 5.68 9.00 9.18 2.49 25.98 34.17 12.06 26.11 31.00 12.73 24.02 6.37 34.35 17.63 6.25 17.62 40 I2_AR6 ActiveIntronRegion 0 12.28 5.49 6.13 2.73 6.15 14.67 21.05 4.84 8.28 7.11 3.87 22.95 30.95 12.18 18.28 22.59 9.90 25.87 6.37 33.83 15.87 6.25 16.74 41 I2_AR7 ActiveIntronRegion 0 6.02 4.50 3.42 2.15 1.48 5.36 14.25 4.46 7.70 3.11 4.68 22.22 12.34 9.49 8.93 5.32 4.60 18.23 2.51 31.97 12.24 4.66 13.14 42 I2_SR4 SilentIntronRegion 0 6.27 2.51 2.93 3.11 5.75 1.54 16.71 3.48 2.89 4.95 4.58 12.82 22.74 6.96 10.36 6.26 3.97 5.80 3.17 12.61 4.40 5.84 5.73 43 I2_AR8 ActiveIntronRegion 0 3.93 2.84 4.10 3.33 7.17 3.25 22.58 7.15 5.32 6.15 4.68 17.05 37.97 9.36 11.86 7.74 9.36 9.67 2.65 20.60 5.56 3.43 8.46 44 I2_SR5 SilentIntronRegion 0 4.32 1.66 5.10 3.96 3.97 1.55 15.52 3.35 2.77 6.42 9.81 10.58 16.28 6.72 3.66 3.95 10.23 10.33 4.40 21.25 6.64 2.29 4.65 45 I2_AR9 ActiveIntronRegion 0 8.53 11.27 2.02 3.68 7.55 4.44 17.08 6.49 4.27 8.96 6.43 11.45 14.74 9.34 6.14 9.29 9.32 9.07 3.85 10.72 6.88 5.26 4.74 46 Ix Intron 0 17.31 14.64 19.34 8.87 12.06 7.58 21.79 11.73 8.55 14.93 16.70 15.56 20.08 13.73 17.84 17.97 21.78 26.85 2.81 16.50 7.67 5.81 8.59 47 Ix_AR4 ActiveIntronRegion 0 15.68 12.48 22.60 9.08 12.47 7.99 20.84 18.95 8.15 14.91 18.02 8.25 10.60 12.78 19.61 17.76 19.41 19.87 3.16 17.22 8.59 5.42 12.02 48 Ix_AR3 ActiveIntronRegion 0 22.22 23.13 17.35 7.41 12.98 12.22 16.37 11.00 8.34 11.33 21.67 26.57 24.27 16.99 13.53 18.84 20.18 38.02 7.88 25.72 6.94 8.57 8.85 49 Ix_AR2 ActiveIntronRegion 0 19.09 16.59 21.04 10.47 12.98 7.72 24.20 10.63 10.08 17.75 17.76 16.36 23.23 15.49 19.64 20.70 26.60 32.28 2.27 17.11 8.62 6.39 8.28 50 Ix_AR1 ActiveIntronRegion 0 8.53 2.95 3.94 3.19 6.58 0.00 6.14 2.17 2.52 2.08 5.48 6.50 7.88 3.02 13.45 5.66 6.16 2.75 0.67 1.64 7.38 5.27 8.99 51 Ix Intron 0 14.88 9.33 2.37 11.54 9.07 12.98 15.11 12.71 11.38 9.97 8.09 14.98 15.51 9.36 6.04 9.04 14.65 9.26 3.81 11.77 8.24 12.78 7.03 52 Ix_AR2 ActiveIntronRegion 0 14.33 7.68 2.25 16.88 9.91 16.47 13.56 12.32 15.94 8.96 6.22 17.18 13.64 8.38 8.25 7.98 11.01 10.02 5.05 7.07 6.18 21.78 7.73 53 Ix_SR1 SilentIntronRegion 0 14.38 9.70 2.74 11.44 9.66 13.56 14.00 13.24 11.04 10.23 8.32 15.16 16.92 9.38 6.02 10.05 15.33 8.81 3.79 12.13 7.03 12.00 7.18 54 Ix_AR1 ActiveIntronRegion 0 19.36 9.22 0.00 5.01 3.90 4.32 25.33 9.78 7.54 9.76 9.27 10.92 8.61 10.82 3.22 3.65 15.20 11.46 2.31 16.06 19.69 5.89 5.15 55 Ix_AR1 ActiveIntronRegion 0 10.31 19.43 6.72 14.78 15.53 11.55 18.96 9.90 9.07 9.17 9.39 17.00 11.81 9.90 10.19 12.80 8.24 2.81 4.93 14.98 3.01 10.46 8.80 56 Ix Intron 0 12.77 10.70 3.68 12.13 9.98 3.54 12.74 8.25 5.58 6.25 1.46 9.96 13.70 1.09 6.29 5.69 7.08 4.32 4.19 9.25 2.36 2.26 3.78 57 Ix_SR1 SilentIntronRegion 0 12.77 10.70 3.68 12.14 9.99 3.54 12.74 8.25 5.58 6.26 1.47 9.96 13.71 1.09 6.29 5.70 7.08 4.32 4.19 9.25 2.36 2.26 3.78 58 Ix_AR1 ActiveIntronRegion 0 11.03 4.41 1.54 3.23 10.20 2.99 16.30 4.78 2.94 1.99 1.35 6.23 12.04 0.31 1.35 2.08 1.54 1.50 0.74 11.14 0.00 0.49 2.05 59 Ix_SR4 SilentIntronRegion 0 3.67 4.67 4.93 7.77 7.37 2.71 17.29 9.72 7.60 3.75 3.35 13.98 12.30 3.53 5.19 10.31 11.61 2.21 2.92 11.40 1.46 1.59 3.89 60 Ix_AR4 ActiveIntronRegion 0 5.27 5.71 6.46 8.49 6.65 0.60 13.84 8.48 7.13 6.98 3.23 21.35 26.38 0.68 5.87 3.12 9.20 0.45 1.04 13.28 1.97 0.00 4.91 61 Ix_AR2 ActiveIntronRegion 0 5.86 4.07 1.23 3.56 12.76 0.00 19.04 10.37 5.99 17.56 1.93 5.00 15.87 0.00 14.28 2.97 3.81 0.00 3.19 17.84 0.00 0.00 0.45 62 Ix_AR1 ActiveIntronRegion 0 3.75 2.34 2.85 1.90 0.04 4.44 6.67 7.80 6.36 3.79 3.70 1.17 4.44 6.32 16.73 9.04 14.69 7.36 5.38 15.52 11.59 1.07 5.88 63 E3_Aa NovelBoundary 0 1361.87 1448.76 1035.95 847.21 795.67 856.89 1277.58 981.55 1111.62 835.19 641.64 392.23 516.52 414.86 550.10 1549.85 1135.30 1387.36 1271.19 1133.12 838.01 631.56 1441.87 64 ER3a ExonRegion 0 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 3.98 0.00 1.45 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.00 65 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66 E4_Aa NovelBoundary 0 23.93 6.51 4.70 15.78 8.40 2.78 34.01 7.35 8.97 6.93 9.69 18.91 25.16 37.38 4.94 14.01 20.94 10.99 24.28 34.20 13.78 8.08 12.12 67 ER4a ExonRegion 0 53.60 26.16 12.48 26.27 29.41 14.23 39.14 9.51 9.54 7.73 10.18 27.29 45.50 11.49 27.86 28.06 25.93 11.22 19.70 29.93 7.95 5.57 18.99 68 E4_Da NovelBoundary 0 767.40 593.91 623.07 681.93 531.75 398.63 624.11 612.74 619.58 574.17 119.45 151.55 312.48 140.33 257.37 438.60 392.61 707.32 295.44 603.12 194.35 177.03 332.75 69 E4a_E5a KnownJunction 0 3.19 6.25 5.50 1.50 0.00 0.00 5.79 1.93 3.04 5.80 2.37 0.00 7.30 0.00 0.00 0.00 0.00 11.03 0.00 3.13 0.00 0.00 0.00 70 Ix_AR1 ActiveIntronRegion 0 28.78 15.42 37.97 42.45 29.14 10.79 21.99 12.72 12.56 14.18 6.66 27.60 54.63 7.27 19.52 17.17 24.53 14.98 7.59 14.74 7.07 2.49 11.39 71 E5_Aa NovelBoundary 0 155.36 184.64 234.91 255.35 107.98 89.04 225.10 282.30 269.18 356.51 54.38 54.32 19.15 42.85 40.18 155.00 114.17 414.95 115.77 187.28 53.13 34.17 95.44 72 ER5a ExonRegion 0 19.68 15.60 5.72 10.36 6.70 7.38 9.72 3.46 2.13 5.51 4.67 7.13 11.03 6.43 12.43 20.70 15.35 12.75 7.14 15.97 10.63 4.47 14.45