Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DIS3L Gene 0 68.06 87.98 76.20 92.35 49.41 65.79 44.90 51.35 67.35 57.33 112.78 97.46 120.69 100.98 75.42 90.76 120.59 55.59 61.64 64.97 29.22 56.58 46.49 2 319194 Transcript 0 1.75 3.01 1.07 2.11 1.73 1.69 0.44 0.57 0.36 0.40 0.21 0.00 0.00 2.42 3.23 0.00 0.56 0.58 1.47 0.92 0.00 0.28 0.00 3 441424 Transcript 0 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 1.26 1.73 0.00 2.80 1.16 0.00 0.00 0.00 0.00 0.00 1.58 1.22 0.00 4 319212 Transcript 1 4.21 6.62 2.94 4.67 5.33 6.98 5.77 5.21 13.16 9.47 46.41 7.86 0.00 21.02 12.64 12.75 38.83 23.13 9.31 18.91 10.69 6.25 7.80 5 ER1a ExonRegion 0 1.39 1.96 2.14 4.23 3.45 3.39 0.87 1.14 0.72 0.80 0.42 0.00 0.00 1.58 3.56 0.00 1.13 1.17 2.94 1.83 0.00 0.55 0.00 6 E1_Ab KnownBoundary 0 10.52 5.59 2.31 8.86 0.00 16.07 4.20 2.30 4.66 3.89 5.11 0.00 0.00 4.65 14.46 0.00 8.70 6.88 18.64 2.94 0.00 3.12 0.00 7 ER1b ExonRegion 0 4.56 5.85 0.36 5.38 0.00 13.01 4.14 1.32 2.21 6.02 1.91 0.00 0.13 3.50 6.73 7.22 7.01 2.75 10.31 3.49 0.00 2.49 0.00 8 E1a_E3a KnownJunction 0 0.00 3.09 0.00 4.03 0.00 13.46 3.89 2.51 1.22 7.09 2.42 0.00 0.00 2.47 9.02 20.34 4.77 0.00 0.00 3.13 0.00 0.00 0.00 9 ER2a ExonRegion 1 8.41 10.29 2.78 4.45 6.85 13.97 9.41 6.52 11.97 9.30 36.02 3.12 0.00 22.33 11.19 17.72 39.33 29.88 14.77 14.69 7.91 4.78 11.25 10 E2a_E3a KnownJunction 1 0.00 2.96 3.10 4.89 3.82 0.00 2.12 3.90 14.35 9.64 56.80 12.60 0.00 19.72 14.09 7.78 38.34 16.37 3.86 23.14 13.47 7.72 4.35 11 E3_Aa NovelBoundary 0 14.82 11.91 2.93 6.13 22.92 0.00 10.64 5.05 5.30 5.78 2.42 0.00 19.48 9.24 0.00 15.38 4.77 5.02 4.05 12.14 0.00 9.00 0.00 12 ER3a ExonRegion 0 13.62 20.52 26.58 40.48 20.05 25.61 9.55 33.39 48.46 38.03 109.59 42.68 60.91 96.03 43.80 88.35 115.85 70.26 36.53 64.78 29.13 43.36 46.05 13 E3a_E4a KnownJunction 1 6.45 23.48 19.54 42.42 26.06 28.45 12.63 24.23 47.13 45.61 95.34 46.37 62.66 103.89 26.45 97.32 97.62 62.80 22.21 68.77 29.96 52.78 15.96 14 I3_AR1 ActiveIntronRegion 0 12.95 11.04 16.83 20.81 8.25 1.06 10.36 10.48 5.94 5.21 4.88 25.57 24.98 7.02 14.73 7.31 15.87 3.73 5.16 7.88 0.76 3.44 3.53 15 ER4a ExonRegion 0 33.98 61.43 27.97 61.00 24.79 41.52 40.00 42.73 58.01 38.79 141.72 90.58 87.73 129.40 56.52 103.49 138.51 71.46 32.94 90.05 44.84 53.74 58.96 16 E4a_E5a KnownJunction 1 30.75 52.75 46.36 76.75 45.33 31.18 42.57 41.07 66.52 47.41 139.77 67.82 85.22 195.60 69.84 77.67 166.43 64.71 40.57 92.94 36.51 83.03 60.44 17 ER5a ExonRegion 0 27.33 56.81 40.63 75.38 28.00 60.61 36.72 40.45 80.27 58.24 169.92 144.72 137.25 153.95 60.01 121.59 190.58 71.22 63.87 88.45 44.93 69.60 62.81 18 E5a_E6a KnownJunction 1 25.26 62.69 51.89 108.54 15.45 59.62 47.96 45.10 112.38 76.64 247.22 349.01 321.57 209.37 72.07 126.72 238.99 98.16 92.33 70.63 45.41 68.09 69.40 19 ER6a ExonRegion 0 21.27 53.69 45.76 75.10 27.18 49.83 38.13 43.14 81.82 70.65 180.40 157.03 143.85 163.38 60.39 115.64 198.97 73.97 95.47 73.58 47.59 63.67 46.95 20 E6a_E7a KnownJunction 1 56.23 106.23 44.82 87.87 40.24 41.57 54.89 35.28 98.18 91.06 167.78 187.26 249.17 249.93 63.79 119.03 196.63 71.71 98.54 94.60 70.80 64.97 54.12 21 ER7a ExonRegion 1 40.24 78.00 38.47 69.54 22.79 96.17 42.99 39.29 88.38 68.71 167.04 174.11 237.00 192.86 62.17 138.71 222.54 97.56 104.67 97.01 52.28 68.62 81.52 22 E7a_E8a KnownJunction 0 41.19 81.89 36.43 66.76 30.48 107.61 19.17 45.84 70.54 52.57 147.62 151.25 186.51 196.78 75.04 111.34 124.08 84.40 108.99 100.03 30.83 56.46 76.91 23 ER8a ExonRegion 0 28.11 72.32 51.49 65.26 28.45 61.17 37.02 42.43 64.01 52.40 138.81 111.84 123.63 137.22 60.12 106.85 145.33 102.13 89.56 87.90 41.97 50.40 50.93 24 E8a_E9a KnownJunction 0 31.86 102.81 59.08 79.54 8.06 43.21 19.87 48.63 61.89 55.39 123.35 112.09 87.17 121.55 53.28 83.48 156.62 99.32 68.99 81.11 52.45 36.99 83.66 25 E8a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.07 0.00 2.53 0.00 0.00 4.94 0.00 0.00 0.00 0.00 0.00 0.00 3.15 2.45 0.00 26 ER9a ExonRegion 0 44.35 136.87 56.67 81.37 39.43 63.46 38.22 55.04 71.67 63.01 128.57 84.42 90.10 136.34 64.22 108.66 148.58 93.55 75.25 87.75 54.33 50.25 61.17 27 E9a_E10a KnownJunction 0 70.09 182.40 43.29 84.60 27.42 51.11 53.00 54.42 69.96 67.85 99.97 99.63 70.13 127.08 65.02 95.70 103.04 79.01 39.81 64.49 27.92 60.56 83.31 28 ER10a ExonRegion 0 56.83 155.93 73.21 113.73 46.21 57.02 40.08 60.60 81.69 75.88 144.23 116.66 118.79 143.91 76.29 126.32 141.65 68.07 78.65 100.85 52.62 75.23 64.86 29 E10a_E11a KnownJunction 1 85.94 193.19 100.23 128.89 71.05 87.68 53.39 49.74 94.24 79.38 166.31 236.63 144.80 162.58 56.99 177.90 141.09 98.53 71.53 108.85 23.72 77.09 62.83 30 ER11a ExonRegion 0 31.12 103.43 75.21 83.89 22.17 35.47 23.99 35.75 72.58 60.91 94.88 86.03 71.11 91.40 46.84 92.94 105.03 66.76 62.36 56.33 26.40 52.26 46.95 31 E11_Da NovelBoundary 0 3.33 6.71 3.55 25.80 7.13 0.00 19.30 6.28 8.16 6.07 0.00 12.60 32.95 4.77 4.45 7.09 31.32 6.22 13.08 15.72 0.00 3.12 4.27 32 E11a_E13a KnownJunction 0 44.23 105.18 106.47 103.08 44.65 83.87 43.77 45.59 88.80 62.10 164.62 89.43 129.05 121.37 62.30 143.72 261.71 77.43 123.20 77.98 47.20 99.69 73.58 33 E11a_E14a NovelJunction 0 3.56 0.00 3.13 2.06 0.00 0.00 0.00 2.34 1.13 0.00 9.53 5.70 13.64 2.12 0.00 7.43 7.95 0.00 0.00 0.00 0.00 3.06 0.00 34 ER12a ExonRegion 0 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.46 0.00 0.65 2.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 E13_Aa NovelBoundary 0 24.97 8.49 2.39 22.61 7.47 2.44 16.83 6.49 4.69 7.41 5.16 11.10 25.81 4.71 4.94 3.42 8.04 21.80 13.55 30.42 3.15 5.51 8.28 36 ER13a ExonRegion 0 24.47 71.44 70.43 67.37 22.30 45.06 23.13 36.46 68.25 51.99 84.36 57.49 71.16 57.63 24.05 74.56 116.53 69.06 60.18 35.55 23.13 42.66 38.49 37 E13a_E14a KnownJunction 0 50.31 115.70 86.72 78.51 54.24 87.51 47.74 57.30 88.43 89.13 158.67 147.65 188.14 141.33 76.15 88.44 194.11 103.22 99.86 71.14 51.46 54.99 90.66 38 E14_Aa NovelBoundary 0 13.63 3.03 3.19 45.25 21.73 2.33 6.09 13.64 6.28 7.39 5.11 6.30 6.66 5.47 4.45 0.00 15.80 6.63 8.38 4.92 6.30 5.45 4.18 39 ER14a ExonRegion 1 30.04 39.18 42.24 34.96 11.88 41.32 21.41 24.77 29.64 28.29 41.61 23.04 64.47 41.68 23.28 48.84 53.81 41.21 32.06 23.44 14.15 31.16 32.66 40 E14a_E15a KnownJunction 1 82.38 122.41 212.09 141.84 51.02 119.70 87.80 131.77 110.82 93.88 193.26 95.28 340.40 173.29 89.87 197.30 235.44 165.19 128.00 107.89 73.89 150.21 113.62 41 E15_Aa NovelBoundary 0 9.56 2.57 6.12 29.43 12.39 10.28 9.94 7.02 2.52 6.04 16.27 25.21 6.82 11.65 13.35 14.87 25.53 5.80 0.00 8.50 0.00 0.00 0.00 42 ER15a ExonRegion 1 75.57 88.60 108.34 101.86 33.25 105.52 50.35 65.35 79.61 67.51 145.59 72.87 210.51 156.68 82.58 123.01 157.25 84.07 72.22 80.82 54.32 92.23 82.59 43 E15_Da NovelBoundary 0 24.52 12.37 30.54 28.70 16.47 5.22 10.33 10.23 8.04 2.93 9.48 5.70 21.59 22.49 28.80 19.57 13.37 16.00 4.14 7.80 3.09 8.63 8.19 44 E15a_E16a KnownJunction 0 153.73 141.09 140.24 145.47 82.85 152.75 64.17 70.98 86.28 93.21 189.10 135.49 158.59 153.98 78.87 117.23 203.93 90.53 105.13 104.50 55.60 147.39 132.57 45 E16_Aa NovelBoundary 1 48.53 3.35 12.24 28.73 25.38 31.69 39.00 0.00 9.84 9.48 10.21 6.15 63.96 55.68 12.36 20.08 27.96 2.20 9.04 24.99 0.00 3.12 8.19 46 ER16a ExonRegion 0 121.28 127.85 124.47 140.74 87.49 108.70 73.71 70.05 102.13 78.14 167.65 142.80 240.42 146.69 102.00 113.32 154.13 56.94 95.04 81.42 31.32 99.82 59.42 47 E16_Da NovelBoundary 0 14.22 5.92 0.00 19.54 21.65 0.00 11.00 0.00 2.60 3.22 0.00 5.40 42.85 12.07 19.66 0.00 9.54 1.74 4.05 2.94 2.35 17.39 3.33 48 E16a_E17a KnownJunction 0 113.28 142.34 106.15 129.52 61.71 83.82 47.30 71.30 86.40 81.36 118.56 142.10 164.44 105.60 66.75 58.28 118.84 38.43 92.80 71.08 34.04 81.87 33.21 49 I16 Intron 0 22.73 17.45 13.01 29.37 22.38 10.89 16.22 11.12 13.51 11.62 12.41 23.77 41.52 21.62 22.97 21.97 14.96 8.44 7.56 12.86 2.26 9.78 8.08 50 I16_SR1 SilentIntronRegion 0 11.30 11.02 9.16 17.47 13.22 7.01 12.77 7.19 11.29 8.30 11.86 16.39 36.52 19.60 21.35 22.02 13.42 7.55 6.09 11.87 2.28 7.31 9.13 51 I16_AR1 ActiveIntronRegion 0 47.01 31.14 21.21 54.70 41.88 19.14 23.60 19.51 18.28 18.70 13.66 39.52 52.35 26.03 26.54 21.99 18.30 10.36 10.71 15.04 2.23 15.08 5.93 52 E17_Aa NovelBoundary 1 62.38 79.33 53.19 109.64 77.50 35.83 69.29 24.56 23.00 38.73 21.69 67.97 94.80 45.15 35.48 41.27 23.84 15.13 9.13 31.38 9.27 15.74 7.94 53 ER17a ExonRegion 0 140.10 170.40 135.88 156.24 90.02 119.27 69.02 84.30 110.91 84.03 186.31 181.93 254.10 139.08 122.49 121.23 170.58 48.19 85.74 86.97 41.34 97.65 64.28 54 E17_Da NovelBoundary 1 60.53 67.22 50.41 92.96 69.61 33.56 59.00 28.38 18.84 45.80 12.42 51.02 33.44 29.49 77.63 28.11 0.00 0.00 23.15 32.66 0.00 9.12 0.00 55 E17a_E18a KnownJunction 0 181.14 183.91 140.98 207.40 128.27 149.74 86.56 100.51 115.36 88.83 153.46 101.88 169.79 138.56 164.29 98.95 108.93 36.44 61.55 89.68 20.26 108.51 31.16 56 I17 Intron 0 17.39 25.50 25.70 37.65 30.56 16.10 24.36 11.84 6.16 14.29 12.38 45.85 38.21 13.81 20.12 13.25 17.02 2.83 12.43 17.21 1.84 6.97 5.32 57 I17_SR1 SilentIntronRegion 0 6.02 13.06 0.00 0.00 14.46 18.97 34.07 0.00 0.00 0.00 8.07 10.66 17.59 11.62 12.00 13.20 13.27 1.56 2.82 11.25 2.16 3.49 0.00 58 I17_AR4 ActiveIntronRegion 0 26.62 37.41 44.68 64.90 45.28 21.56 30.28 20.52 10.55 24.72 18.17 71.25 52.64 18.11 27.24 17.07 24.05 4.48 19.34 22.86 1.61 10.42 7.85 59 E18_Aa NovelBoundary 1 27.12 58.54 56.03 93.46 47.96 38.78 50.17 24.77 21.30 37.53 18.64 109.24 77.11 19.01 47.59 33.24 38.24 8.50 20.24 41.35 0.00 15.19 3.41 60 ER18a ExonRegion 0 230.12 225.68 208.18 252.48 185.38 173.32 148.32 126.22 141.27 117.24 211.49 253.58 298.63 140.69 170.88 152.55 193.39 47.98 83.18 106.99 23.79 112.33 50.51 61 E18_Da NovelBoundary 1 21.49 63.28 60.58 95.63 46.77 39.47 38.82 20.33 25.20 45.93 50.17 98.58 74.18 25.72 33.01 23.58 33.10 3.94 15.62 31.19 0.00 2.76 0.00 62 E18a_E19a KnownJunction 0 329.02 180.30 146.30 198.94 147.37 140.54 139.20 80.75 107.12 80.91 157.67 105.33 189.60 83.64 153.16 117.66 175.78 24.04 38.87 85.59 17.30 71.95 27.32 63 I18 Intron 0 4.64 16.73 18.02 11.14 32.28 17.10 24.69 4.24 9.08 10.31 13.78 33.80 52.50 12.68 20.68 11.41 7.24 3.04 3.49 12.83 0.00 9.14 0.00 64 I18_AR1 ActiveIntronRegion 0 4.74 17.07 18.39 11.35 32.96 17.45 25.21 4.33 9.28 10.51 14.08 34.49 53.65 12.96 21.14 11.63 7.40 3.11 3.57 13.09 0.00 9.34 0.00 65 E19_Aa NovelBoundary 1 37.64 53.15 71.38 92.76 63.50 60.31 67.17 35.86 17.94 50.15 11.53 31.96 74.51 26.13 37.09 39.14 27.58 11.07 30.78 23.27 0.00 8.21 3.67 66 ER19a ExonRegion 0 118.65 103.65 111.85 134.17 85.15 79.50 62.98 71.52 73.96 68.76 103.60 114.19 122.22 88.03 130.06 89.28 113.16 37.66 66.72 69.85 20.86 57.86 42.73 67 ER19b ExonRegion 0 2.12 4.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.25 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 68 IG11 Intergenic 0 12.94 29.39 28.10 37.96 23.80 25.17 29.12 15.75 11.13 19.06 19.14 24.78 33.62 31.86 25.43 25.71 26.83 17.59 26.56 18.85 5.51 6.15 5.51 69 IG11_SR1 SilentIntergenicRegion 0 12.00 22.95 24.01 28.36 23.24 24.69 27.60 11.59 8.66 14.80 15.70 17.81 25.15 26.55 23.09 24.25 23.12 17.77 25.44 16.35 5.16 5.66 6.35 70 IG11_AR1 ActiveIntergenicRegion 0 12.99 39.85 48.82 70.00 31.59 29.85 34.67 27.95 19.22 32.93 29.83 44.84 59.90 46.03 37.01 38.52 44.12 23.16 39.60 27.41 8.22 7.75 5.90 71 IG11_SR2 SilentIntergenicRegion 0 24.76 52.68 18.38 39.17 19.47 29.92 39.24 19.40 12.64 21.23 21.92 27.23 33.90 44.16 23.21 17.01 18.79 12.54 17.72 20.48 4.51 5.26 2.54