Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C15orf33 Gene 0 5.26 3.59 2.15 4.84 10.82 6.76 4.75 1.38 5.56 4.59 3.56 9.62 6.91 5.07 6.82 7.53 4.48 2.87 6.20 3.98 4.34 4.59 3.68 2 299338 Transcript 0 1.06 0.00 0.76 2.60 2.14 2.96 0.00 0.00 0.60 1.75 1.38 2.44 1.29 0.96 2.42 0.00 0.00 0.95 0.53 0.00 2.67 0.00 0.00 3 354658 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.32 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 2.36 3.15 0.00 0.00 4 IG28 Intergenic 0 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.55 0.00 1.42 0.00 0.00 0.00 1.01 1.05 5.96 12.60 5 IG28_AR2 ActiveIntergenicRegion 0 0.00 0.00 0.00 0.00 1.84 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.95 0.00 1.92 0.00 0.00 0.00 1.77 0.64 8.29 16.03 6 IG28_SR1 SilentIntergenicRegion 0 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.27 0.00 1.24 0.00 0.00 0.00 0.49 1.70 4.56 11.99 7 ER1a ExonRegion 0 8.27 5.14 0.70 2.71 17.66 6.00 5.17 0.59 8.68 5.26 5.34 0.78 2.85 3.49 6.87 20.43 8.34 6.49 13.17 4.26 9.24 2.41 7.51 8 E1_Da NovelBoundary 0 0.00 0.00 0.00 3.26 3.82 0.00 0.00 3.37 7.38 3.22 0.00 5.70 25.97 0.00 15.20 7.69 4.77 0.00 9.04 2.81 3.15 5.94 0.00 9 E1a_E2a KnownJunction 0 0.00 5.92 1.77 1.30 3.82 2.44 0.00 0.00 12.01 2.69 0.00 6.30 0.00 7.00 5.44 6.84 0.00 3.73 0.00 2.88 26.50 0.00 11.95 10 ER2a ExonRegion 0 9.88 3.64 2.56 9.82 17.69 8.60 1.84 0.31 14.78 12.13 11.08 7.95 11.63 13.16 22.76 36.68 13.39 13.20 23.36 10.19 20.37 9.28 13.37 11 E2a_E3a KnownJunction 0 11.85 5.99 0.00 14.25 15.96 10.22 8.13 2.18 15.42 5.13 11.42 25.66 13.15 19.78 43.76 35.97 3.83 19.36 26.54 11.25 9.27 5.82 19.04 12 ER3a ExonRegion 0 5.25 3.09 3.00 6.46 17.49 2.82 7.82 3.94 11.21 5.44 4.72 27.18 22.58 11.13 16.44 12.00 12.65 10.06 17.87 7.21 7.02 5.59 6.47 13 E3a_E4a KnownJunction 0 0.00 0.00 4.64 3.80 31.41 0.00 8.35 5.09 8.68 4.65 2.68 36.46 13.64 4.59 15.95 0.00 0.00 0.00 20.71 2.75 2.41 3.12 4.35 14 E3a_E5a NovelJunction 0 0.00 0.00 0.00 0.00 12.99 5.68 4.50 0.00 9.61 7.63 0.00 20.56 0.00 5.42 6.18 0.00 0.00 0.00 0.00 0.00 0.00 5.94 0.00 15 ER4a ExonRegion 0 11.25 8.92 4.60 12.12 23.63 7.70 3.56 4.93 7.60 9.17 6.80 29.00 16.07 9.84 10.83 8.76 7.73 3.16 8.02 6.32 3.56 11.96 3.37 16 E4a_E5a KnownJunction 0 13.11 2.70 13.57 12.39 19.86 2.33 2.12 3.74 7.99 7.31 4.74 32.86 6.82 23.54 0.00 3.25 17.67 1.95 0.00 3.20 2.90 9.31 8.19 17 ER5a ExonRegion 0 12.70 3.23 5.32 12.61 18.42 5.39 9.70 3.38 6.45 8.69 10.29 33.81 26.07 14.76 17.88 18.44 8.69 2.20 5.81 5.51 2.07 16.39 8.29 18 E5a_E6a KnownJunction 0 17.93 0.00 0.00 12.49 42.44 14.48 17.00 4.39 8.25 7.39 3.90 53.12 20.29 9.59 15.20 6.84 0.00 2.53 17.79 8.18 3.15 14.76 7.51 19 E5a_E8a NovelJunction 0 0.00 0.00 0.00 3.56 0.00 0.00 0.00 0.00 1.68 1.58 2.68 17.71 0.00 0.00 5.32 0.00 0.00 0.00 4.80 0.00 2.53 0.00 0.00 20 ER6a ExonRegion 0 5.64 5.87 2.69 14.08 36.42 16.61 13.90 2.45 9.47 9.65 3.06 44.74 10.55 6.86 12.73 1.49 1.28 5.13 15.13 6.97 1.35 11.05 2.37 21 E6a_E7a KnownJunction 0 9.78 9.34 7.16 10.82 20.46 19.59 10.82 0.00 10.30 8.97 4.90 30.91 6.33 8.48 8.90 0.00 4.21 4.68 9.04 9.01 0.00 10.78 0.00 22 ER7a ExonRegion 0 7.26 12.71 5.17 10.36 24.74 8.31 8.35 6.21 15.52 7.21 6.90 23.67 14.74 21.07 17.41 11.41 10.78 3.29 11.07 5.21 5.04 14.19 2.85 23 E7_Da NovelBoundary 0 14.74 2.96 4.58 12.72 37.27 9.99 9.76 13.51 10.33 14.72 15.32 44.86 14.93 7.24 37.83 11.36 13.65 3.94 0.00 6.39 6.05 10.96 3.41 24 E7a_E8a KnownJunction 0 0.00 0.00 0.00 1.76 4.33 0.00 0.00 0.00 2.69 1.37 0.00 0.00 13.64 0.00 0.00 0.00 0.00 2.45 0.00 2.56 2.84 0.00 0.00 25 I7 Intron 0 8.23 4.71 3.99 9.75 11.68 5.61 5.43 4.39 4.82 7.91 4.81 19.35 7.84 11.00 14.17 6.36 5.62 2.09 5.01 4.46 6.35 5.46 2.95 26 I7_AR1 ActiveIntronRegion 0 12.49 6.35 6.41 15.21 15.83 8.91 7.72 7.78 6.36 12.48 8.21 29.03 12.53 18.34 23.65 11.80 9.56 3.42 7.28 6.11 12.09 7.31 3.36 27 ER8a ExonRegion 0 3.27 1.15 0.48 1.97 3.84 4.85 2.73 0.00 3.99 0.65 1.25 10.63 1.52 3.79 3.75 3.21 0.00 2.44 3.22 4.02 2.69 0.00 4.54 28 E8a_E9a KnownJunction 0 0.00 0.00 1.83 2.06 4.24 8.01 0.00 0.00 0.00 1.53 0.00 6.30 0.00 0.00 5.19 0.00 0.00 1.62 0.00 0.00 3.09 0.00 0.00 29 E8a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.32 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 2.36 3.15 0.00 0.00 30 E9_Aa NovelBoundary 0 0.00 0.00 0.00 0.00 3.57 0.00 2.25 0.00 1.27 1.02 0.00 0.00 15.10 0.00 6.30 0.00 0.00 0.00 0.00 3.26 0.00 0.00 0.00 31 ER9a ExonRegion 0 3.17 0.00 0.44 2.11 2.18 0.86 0.00 0.00 1.79 2.38 1.44 1.02 3.86 0.41 2.08 0.00 0.00 1.23 1.59 0.00 1.90 0.00 0.00 32 E9a_E10a KnownJunction 0 0.00 0.00 0.00 3.63 0.00 0.00 0.00 0.00 0.00 1.34 2.68 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 33 ER10a ExonRegion 0 0.85 0.10 0.00 3.14 4.11 2.21 0.53 0.00 3.04 2.10 1.51 0.10 0.11 1.93 3.63 0.09 0.00 0.00 0.05 0.42 1.94 0.49 0.14 34 E10a_E11a KnownJunction 0 0.00 0.00 0.00 2.06 8.66 0.00 0.00 0.00 4.28 1.48 2.47 0.00 0.00 2.12 4.45 0.00 0.00 0.00 0.00 3.07 0.00 3.12 0.00 35 ER11a ExonRegion 0 0.00 0.66 0.02 1.57 4.13 1.36 0.19 0.00 2.00 1.70 0.94 1.60 2.45 1.59 2.94 1.01 0.00 0.00 0.65 1.71 2.44 0.69 2.04 36 E11a_E12a KnownJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.45 0.00 0.00 0.00 4.80 3.26 0.00 3.12 0.00 37 I11_AR1 ActiveIntronRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 8.18 0.04 38 ER12a ExonRegion 0 0.00 1.06 0.93 2.25 0.00 7.15 4.57 0.00 2.86 0.68 0.00 0.00 0.00 0.70 2.78 0.00 0.00 0.00 0.75 1.26 2.56 0.62 1.35 39 E12a_E13a KnownJunction 0 0.00 0.00 0.00 4.79 0.00 26.80 13.43 0.00 1.79 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.13 2.66 0.00 0.00 40 I12_AR1 ActiveIntronRegion 0 10.91 2.48 1.34 3.98 13.78 3.15 5.52 1.89 1.81 1.26 0.00 1.94 0.95 0.89 0.50 1.46 0.00 0.00 0.78 2.09 0.00 2.04 0.00 41 ER13a ExonRegion 0 8.72 1.96 4.66 3.50 4.25 15.63 7.89 1.63 1.31 3.94 0.61 0.03 2.13 1.79 1.30 0.94 0.04 0.06 1.35 2.34 0.60 2.63 1.97 42 E13a_E14a KnownJunction 0 0.00 0.00 0.00 4.13 0.00 17.21 1.72 0.00 2.34 0.00 0.00 0.00 6.82 0.00 0.00 0.00 0.00 0.00 4.24 0.00 0.00 0.00 0.00 43 I13_AR2 ActiveIntronRegion 0 6.55 11.48 2.21 19.12 4.75 33.42 11.57 10.31 15.46 10.14 0.00 3.77 0.00 0.00 0.00 0.00 0.00 1.25 5.24 7.14 0.00 1.61 1.23 44 I13_AR3 ActiveIntronRegion 0 10.52 15.56 2.99 23.71 9.02 25.66 11.31 9.49 16.35 13.50 0.00 2.22 2.05 0.64 1.57 0.71 0.34 3.37 5.11 5.02 0.64 4.28 2.27 45 I13_AR4 ActiveIntronRegion 0 10.81 13.63 2.40 27.10 12.79 22.67 13.05 1.89 12.66 11.16 0.00 3.76 1.63 0.28 0.68 1.25 1.77 2.26 4.03 5.82 1.28 2.79 3.99 46 I13_SR2 SilentIntronRegion 0 2.44 10.39 2.85 14.27 6.07 23.42 8.58 6.67 13.48 12.11 0.06 0.59 2.68 0.38 0.20 0.36 0.54 4.35 0.74 7.44 1.41 2.69 2.73 47 I13_AR5 ActiveIntronRegion 0 3.60 9.95 1.50 12.89 6.36 17.02 8.07 5.78 19.55 11.28 0.43 3.57 5.06 1.99 0.25 1.14 1.41 6.49 2.49 7.54 2.11 3.11 6.62 48 I13_SR3 SilentIntronRegion 0 5.01 8.60 4.16 9.35 5.03 7.73 7.13 4.92 14.50 9.42 0.32 4.54 3.01 0.46 0.63 1.25 0.54 2.05 1.81 6.24 0.89 2.82 3.08 49 I13_AR7 ActiveIntronRegion 0 20.06 24.41 14.66 62.26 34.83 39.79 21.02 24.15 44.96 32.95 0.89 3.34 6.40 1.46 4.98 3.90 0.00 3.51 5.72 14.60 2.31 11.25 8.45 50 I13_SR5 SilentIntronRegion 0 8.32 15.29 6.69 15.25 11.67 16.42 14.99 10.40 24.84 17.95 1.20 10.84 9.49 1.18 2.62 5.53 3.68 7.94 5.98 18.29 3.35 6.64 9.28 51 E14_Aa NovelBoundary 0 0.00 12.10 23.27 26.60 12.22 2.67 31.31 11.83 34.81 17.73 2.53 6.45 13.31 4.77 0.00 0.00 0.00 14.14 13.65 34.77 0.00 3.12 8.71 52 ER14a ExonRegion 0 2.77 3.94 8.22 2.48 8.71 16.13 10.68 0.00 5.80 2.54 0.00 4.61 10.76 0.69 4.02 0.00 7.96 2.96 7.72 6.85 4.29 4.03 7.68 53 E14_Da NovelBoundary 0 17.04 26.90 8.22 25.27 15.45 32.94 56.88 6.74 37.90 28.80 0.00 33.01 26.13 9.18 15.08 11.62 8.23 3.40 25.69 41.23 5.25 22.47 7.09 54 E14a_E15a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 8.52 0.00 0.00 0.00 3.17 0.00 0.00 0.00 2.35 0.00 0.00 4.21 0.00 0.00 0.00 0.00 0.00 0.00 55 I14 Intron 0 6.25 10.39 6.12 10.86 8.83 14.36 16.29 8.17 19.85 11.83 0.70 14.86 12.03 2.22 2.33 3.82 2.87 10.56 7.16 22.17 4.59 7.67 9.16 56 I14_AR1 ActiveIntronRegion 0 8.65 10.28 7.07 10.76 9.04 14.13 15.45 8.08 21.79 14.20 0.38 13.37 11.02 2.04 5.10 3.48 3.38 13.62 9.85 23.10 5.51 6.34 6.76 57 I14_SR1 SilentIntronRegion 0 9.17 10.39 10.55 22.79 3.57 30.56 11.92 19.40 29.44 8.79 0.00 17.32 8.86 3.07 0.00 0.00 6.60 17.66 28.67 34.75 5.02 8.10 7.18 58 I14_AR2 ActiveIntronRegion 0 5.05 11.66 6.98 12.23 9.33 16.81 19.11 11.48 22.22 11.79 0.53 16.26 13.07 2.18 1.62 4.45 3.86 7.94 4.94 19.98 3.46 9.49 10.60 59 I14_SR2 SilentIntronRegion 0 6.32 9.24 4.80 9.41 8.34 11.84 14.03 4.82 16.56 10.89 1.03 14.16 11.56 2.34 1.81 3.44 1.62 11.67 7.80 23.79 5.30 6.49 8.89 60 E15_Aa NovelBoundary 0 0.00 20.65 4.79 16.91 19.35 15.33 16.38 9.69 25.52 12.49 0.00 47.42 61.68 0.00 0.00 4.19 0.00 14.43 14.31 29.79 0.00 2.88 8.71 61 ER15a ExonRegion 0 4.63 8.25 0.09 0.76 8.79 13.94 15.72 0.00 2.29 3.46 2.82 21.34 11.26 1.04 1.74 2.17 3.07 1.29 2.23 12.34 2.55 6.01 2.14 62 E15_Da NovelBoundary 0 0.00 34.80 3.25 22.91 7.13 24.02 20.54 6.00 31.57 33.04 0.00 33.31 20.29 0.00 0.00 7.69 9.54 4.48 3.48 36.18 0.00 19.23 11.35 63 E15a_E16a KnownJunction 0 0.00 3.35 0.00 2.06 4.33 13.63 6.49 0.00 3.36 4.57 4.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 0.00 0.00 64 I15 Intron 0 17.55 19.83 7.64 18.98 13.70 16.92 20.12 7.33 17.65 11.04 0.86 17.32 14.38 1.32 3.00 4.35 4.16 10.88 8.80 25.59 6.63 10.50 7.64 65 I15_SR1 SilentIntronRegion 0 15.43 20.04 3.59 8.22 6.51 10.66 8.21 6.14 10.90 6.02 0.59 17.95 11.08 1.46 1.51 0.73 4.59 3.80 5.82 19.70 1.15 14.58 0.72 66 I15_AR1 ActiveIntronRegion 0 18.95 21.59 7.74 20.05 14.18 18.32 23.55 8.33 21.22 12.79 0.94 20.57 15.64 1.63 3.63 4.54 4.66 9.07 8.13 26.65 4.28 10.70 7.31 67 I15_SR2 SilentIntronRegion 0 15.95 17.42 8.11 19.08 14.09 15.90 17.09 6.12 13.68 9.35 0.80 12.78 13.13 0.86 2.33 4.60 3.41 14.43 10.19 25.04 10.69 9.68 9.10 68 E16_Aa NovelBoundary 0 3.78 15.52 11.50 23.21 34.30 19.87 14.88 12.08 26.50 15.12 2.21 43.66 6.33 4.94 4.70 0.00 7.95 1.99 13.93 19.69 0.00 14.57 0.00 69 ER16a ExonRegion 0 0.00 0.16 0.00 0.56 0.73 2.92 2.79 0.00 0.76 1.53 1.07 0.65 0.71 0.00 0.00 0.00 1.21 0.00 0.00 0.39 0.95 0.01 0.00