Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PIF1 Gene 0 41.50 30.89 56.32 20.58 14.42 22.16 28.03 16.63 5.59 31.31 85.43 14.89 6.37 176.71 113.05 98.88 100.05 84.70 20.97 60.07 15.19 18.74 15.29 2 448035 Transcript 0 10.29 10.26 7.23 2.93 7.38 14.50 22.22 2.28 3.01 8.25 30.95 7.61 2.86 83.02 35.68 47.72 55.01 44.92 10.76 23.58 7.90 8.02 11.04 3 333425 Transcript 0 0.00 0.00 1.71 0.00 0.00 0.00 0.00 0.00 0.00 3.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.97 0.00 0.00 0.00 0.00 0.00 4 268043 Transcript 0 100.31 67.90 90.63 44.29 28.79 28.72 56.65 31.76 6.07 48.05 101.45 34.59 3.75 255.61 163.45 125.62 120.12 114.73 31.09 83.55 23.15 33.77 23.17 5 IG37 Intergenic 0 5.66 10.06 18.61 7.79 7.23 7.82 5.63 16.15 11.63 12.99 1.79 1.80 1.11 2.71 1.73 1.78 6.57 12.53 13.04 15.39 4.20 1.65 2.19 6 IG37_SR2 SilentIntergenicRegion 0 6.03 10.94 21.21 8.77 7.97 7.54 5.83 17.71 13.24 14.73 1.94 1.99 1.32 3.05 1.91 1.86 6.81 13.57 13.98 16.82 4.42 1.82 2.05 7 IG37_AR1 ActiveIntergenicRegion 0 11.70 13.31 14.10 5.87 10.07 21.30 11.80 14.28 7.37 7.44 0.98 1.31 0.00 2.39 1.03 1.50 11.08 17.35 12.87 20.08 6.68 1.58 2.22 8 ER1a ExonRegion 0 1.31 1.36 1.50 0.00 4.72 3.79 7.02 0.00 0.00 2.46 6.13 0.00 0.00 18.23 22.90 4.65 12.29 1.24 5.07 13.35 1.48 0.00 0.00 9 E1_Da NovelBoundary 0 0.00 2.57 3.22 1.80 3.90 23.91 27.29 0.00 1.45 1.67 4.79 0.00 0.00 4.77 4.82 12.13 0.00 14.88 0.00 14.25 0.00 0.00 0.00 10 E1a_E2a KnownJunction 0 3.26 2.96 7.75 1.30 7.81 25.27 13.73 1.97 0.00 14.45 20.53 0.00 0.00 42.73 43.39 29.99 47.50 28.11 8.94 39.05 0.00 0.00 0.00 11 E1a_E3a NovelJunction 0 0.00 0.00 0.00 1.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.65 0.00 0.00 0.00 0.00 0.00 3.26 0.00 0.00 0.00 12 ER2a ExonRegion 0 2.56 3.02 9.55 1.86 2.50 7.28 6.30 3.06 1.12 9.59 28.37 3.47 2.46 78.04 37.36 35.55 54.34 29.04 8.99 18.15 3.91 2.97 3.82 13 E2_Da NovelBoundary 0 10.74 14.47 12.21 7.92 7.81 5.62 12.50 4.07 1.79 7.66 26.74 0.00 0.00 54.09 29.05 41.27 20.57 68.11 13.37 11.44 20.20 3.12 11.69 14 E2a_E3a KnownJunction 0 6.30 6.58 22.86 9.42 0.00 0.00 1.72 7.48 4.66 17.25 61.91 0.00 0.00 85.88 40.05 50.67 77.89 33.29 21.18 34.90 8.46 14.21 6.66 15 I2 Intron 0 8.49 11.65 19.65 9.57 11.58 10.04 26.56 6.40 3.28 8.16 19.08 9.55 5.13 67.42 27.72 35.97 39.72 39.66 11.56 20.32 5.89 3.18 10.47 16 I2_AR1 ActiveIntronRegion 0 1.40 6.73 8.06 5.83 2.95 5.67 9.35 5.69 1.63 8.68 16.22 6.97 3.41 58.63 27.17 26.22 45.18 29.01 14.77 19.73 6.32 2.30 7.13 17 I2_AR2 ActiveIntronRegion 0 13.99 17.23 31.87 16.86 18.59 13.06 48.68 8.29 4.05 9.27 26.86 14.33 7.85 84.80 35.86 41.34 41.95 49.49 14.03 24.87 7.09 3.53 14.93 18 I2_SR1 SilentIntronRegion 0 9.21 10.49 17.22 5.05 12.20 10.79 17.82 5.23 4.18 6.89 13.34 7.02 3.89 60.20 20.47 41.22 35.12 40.72 6.60 16.85 4.54 3.74 9.13 19 E3_Aa NovelBoundary 0 0.00 9.80 19.87 1.93 0.00 5.05 10.51 0.00 2.60 9.62 18.37 0.00 5.84 50.80 5.19 26.92 17.77 25.25 4.14 17.32 0.00 5.94 8.37 20 ER3a ExonRegion 0 2.63 16.41 31.18 4.99 5.81 12.74 12.15 8.03 3.39 20.66 74.53 9.08 5.54 139.52 66.23 60.87 94.73 59.52 9.44 29.55 13.24 11.86 5.85 21 E3_Da KnownBoundary 0 0.00 6.51 8.10 2.06 0.00 12.61 10.20 2.42 0.00 10.40 28.64 18.16 6.82 78.05 29.54 36.49 30.67 36.56 18.54 8.44 20.08 3.12 0.00 22 E3a_E3b KnownJunction 0 3.33 5.72 21.52 7.29 8.23 11.19 10.25 7.11 3.01 16.14 82.13 5.85 0.00 102.30 35.85 44.01 35.06 47.30 8.85 33.36 0.00 10.84 7.94 23 ER3b ExonRegion 0 10.29 10.26 7.23 2.93 7.38 14.50 22.22 2.28 3.01 8.25 30.95 7.61 2.86 83.02 35.68 47.72 55.01 44.92 10.76 23.58 7.90 8.02 11.04 24 E3_Ab NovelBoundary 1 38.75 51.11 31.49 5.49 29.20 47.25 90.49 7.64 4.92 15.23 50.33 18.76 6.82 166.11 36.22 97.50 103.88 82.24 33.04 40.40 2.78 14.27 25.44 25 E3_Db NovelBoundary 0 7.41 29.80 43.94 22.11 30.14 46.28 48.40 9.00 5.87 25.01 93.60 18.91 6.82 179.59 129.43 143.81 109.12 70.68 22.40 48.77 16.25 19.04 24.41 26 ER3c ExonRegion 0 16.20 35.72 25.68 12.03 20.59 39.15 51.40 5.19 5.16 21.49 122.70 15.25 4.69 195.25 87.16 135.81 122.85 77.36 27.84 58.09 10.16 19.02 27.96 27 ER3d ExonRegion 0 3.44 7.78 16.85 9.57 6.61 13.54 14.65 5.30 3.89 14.83 52.83 3.57 4.74 100.90 60.95 51.58 59.51 31.47 8.06 26.83 8.88 9.21 6.48 28 E3_Dc NovelBoundary 1 10.59 15.92 36.25 12.15 0.00 7.84 3.84 8.17 4.63 25.06 74.18 16.81 6.82 134.97 33.01 77.24 124.45 64.05 3.58 34.64 8.03 15.31 4.35 29 E3c_E4a KnownJunction 0 2.96 0.00 8.22 1.50 0.00 4.20 4.20 0.00 0.00 1.50 24.53 0.00 0.00 78.64 28.06 36.40 31.60 15.75 4.33 10.55 2.59 3.12 4.27 30 E3c_E5a NovelJunction 0 0.00 0.00 10.73 1.76 0.00 8.35 4.15 0.00 3.33 0.00 12.21 0.00 0.00 9.42 0.00 11.02 3.83 19.36 0.00 6.14 8.71 0.00 4.27 31 I3 Intron 0 0.00 0.79 7.76 3.92 2.07 2.13 5.12 0.00 0.71 1.98 19.42 8.56 2.98 77.69 31.19 24.11 24.23 19.86 12.31 11.51 1.70 2.41 9.08 32 I3_AR1 ActiveIntronRegion 0 0.00 1.17 11.51 5.82 3.07 3.15 7.59 0.00 1.05 2.94 28.80 10.65 2.21 93.67 40.39 35.77 35.94 29.46 18.25 17.07 2.53 3.58 13.46 33 I3_SR1 SilentIntronRegion 1 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 4.80 46.54 12.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 E4_Aa NovelBoundary 0 33.12 37.69 87.76 27.97 23.01 13.97 27.78 29.53 14.41 34.52 89.08 18.61 13.64 168.11 85.54 128.94 85.74 141.36 32.85 51.58 23.97 21.86 28.26 35 ER4a ExonRegion 0 19.36 18.74 49.50 12.04 10.44 13.49 27.37 12.13 2.61 20.60 79.61 23.33 10.23 193.67 91.46 79.96 106.04 50.42 16.40 42.94 11.59 21.42 12.49 36 E4_Da NovelBoundary 0 0.00 22.04 27.82 16.15 11.63 11.47 34.36 6.82 5.87 24.31 45.91 18.91 0.00 84.05 51.05 45.29 38.62 62.76 24.75 37.01 5.19 31.54 20.23 37 E4a_E5a KnownJunction 0 27.56 14.14 77.88 19.21 7.64 28.17 20.67 16.84 3.76 32.58 106.87 11.70 0.00 226.09 146.86 173.54 91.63 123.45 42.07 62.96 2.29 19.47 15.62 38 I4 Intron 0 8.89 8.54 5.48 2.44 3.21 13.20 8.74 1.55 0.00 1.03 16.24 10.70 2.32 37.32 30.04 42.80 19.81 9.37 5.73 8.94 6.61 6.25 14.10 39 I4_SR1 SilentIntronRegion 0 9.10 8.75 5.60 2.48 3.29 13.52 8.95 1.58 0.00 1.04 16.60 10.95 2.37 38.22 30.69 43.83 20.20 9.59 5.87 9.15 6.74 6.40 14.44 40 E5_Aa NovelBoundary 0 20.52 12.70 60.44 7.46 4.33 7.78 22.92 18.57 7.35 17.86 21.85 18.01 6.49 50.21 20.27 29.22 46.66 45.68 17.98 11.89 5.62 7.41 4.10 41 ER5a ExonRegion 0 36.39 29.02 89.25 30.13 18.47 23.39 43.90 22.00 7.65 42.55 117.17 15.17 8.56 220.50 125.59 128.84 132.47 172.39 42.41 83.50 10.69 27.29 24.03 42 E5_Da NovelBoundary 0 12.22 18.62 26.46 5.69 16.47 7.33 13.78 18.52 3.18 23.88 14.32 6.30 0.00 38.97 8.90 29.99 29.27 52.69 13.37 24.54 5.50 0.00 8.71 43 E5a_E6a KnownJunction 0 50.53 25.39 77.94 39.09 22.84 15.84 42.57 15.07 9.84 39.51 92.29 18.91 0.00 194.77 78.37 125.18 91.72 108.61 33.98 92.68 5.99 42.37 7.68 44 I5 Intron 0 24.91 17.29 2.39 0.00 7.00 1.20 21.64 0.00 0.00 0.00 21.48 6.99 0.00 16.87 17.63 31.09 25.90 6.63 8.33 12.52 1.44 6.81 1.92 45 I5_SR1 SilentIntronRegion 0 24.06 18.78 2.45 0.00 8.73 0.58 24.77 0.00 0.00 0.00 20.70 7.98 0.00 19.32 16.11 28.47 26.23 5.45 7.88 10.97 1.39 7.40 1.47 46 I5_AR1 ActiveIntronRegion 0 27.07 16.70 2.42 0.00 5.63 1.83 19.62 0.00 0.00 0.00 23.35 6.38 0.00 15.22 20.08 35.27 26.84 8.12 9.22 14.73 1.57 6.58 2.47 47 E6_Aa NovelBoundary 0 12.67 8.88 28.06 13.05 0.00 13.29 12.41 4.39 0.00 11.52 21.27 0.00 13.47 28.55 15.20 8.46 14.03 33.62 4.80 11.95 3.15 0.00 11.44 48 ER6a ExonRegion 0 56.20 34.63 71.98 22.69 13.58 20.72 31.13 9.29 8.80 40.54 92.22 21.20 7.23 228.70 105.07 117.86 115.01 104.86 36.05 76.50 14.48 20.47 21.79 49 E6_Da NovelBoundary 0 12.67 5.59 31.25 8.32 4.33 8.18 21.82 4.27 0.00 10.42 18.22 6.75 0.00 47.56 18.91 22.81 37.77 43.07 3.95 24.10 5.00 2.57 0.00 50 E6a_E7a KnownJunction 0 6.37 6.38 11.41 6.33 0.00 2.90 8.30 0.00 1.71 10.66 37.27 0.00 0.00 74.28 52.66 62.38 42.26 35.69 17.32 16.81 8.53 8.76 16.22 51 E6a_E8a NovelJunction 0 3.41 0.00 10.59 0.00 3.48 0.00 0.00 12.20 0.00 1.48 13.06 0.00 6.82 9.83 4.45 14.95 7.85 4.52 4.33 5.69 3.15 4.84 3.67 52 I6 Intron 0 5.66 8.50 18.02 5.94 4.47 3.68 14.61 4.09 2.15 10.86 23.27 5.45 4.52 40.78 21.30 22.86 27.32 23.04 3.46 14.23 2.21 2.79 3.19 53 I6_SR1 SilentIntronRegion 0 5.73 8.79 18.71 6.23 4.65 3.90 15.11 4.27 2.25 11.44 24.38 5.77 4.79 42.20 22.15 23.48 28.21 23.81 3.67 14.67 2.34 2.95 3.30 54 E7_Aa NovelBoundary 0 36.82 36.70 65.02 14.42 11.88 19.93 31.93 8.21 2.58 36.99 75.18 18.91 6.82 109.13 86.16 121.16 80.79 109.89 32.19 57.72 11.92 20.08 16.30 55 ER7a ExonRegion 0 28.29 30.47 60.08 18.71 18.69 17.64 17.46 14.95 5.48 33.40 93.01 11.04 10.99 212.52 116.40 112.26 94.97 115.34 18.43 74.64 16.81 15.75 11.39 56 E7a_E8a KnownJunction 0 29.49 15.46 68.51 20.08 12.99 16.69 35.11 17.42 11.55 35.97 103.13 23.71 20.45 281.24 149.45 111.00 127.54 134.97 26.07 44.61 16.62 32.15 11.18 57 ER8a ExonRegion 0 27.71 22.52 65.30 17.14 10.20 33.11 36.37 12.12 6.96 41.31 115.99 8.78 2.54 232.10 133.92 120.36 110.63 124.30 28.34 66.95 25.83 27.77 25.96 58 E8_Da NovelBoundary 0 7.41 12.30 10.41 6.19 7.56 9.31 10.16 16.43 1.10 8.38 38.22 6.30 0.00 71.81 24.48 8.72 25.99 36.81 0.00 17.39 10.38 2.76 4.18 59 E8a_E9a KnownJunction 0 31.04 28.35 53.78 18.85 25.38 46.85 46.33 22.55 5.76 38.36 71.44 6.30 7.14 200.19 110.76 82.46 84.24 114.74 12.99 44.68 34.84 7.65 22.62 60 I8 Intron 0 10.16 8.62 14.26 6.57 3.58 6.34 6.94 4.31 2.05 6.29 31.28 5.66 2.68 62.32 26.24 35.16 29.10 33.83 7.11 17.09 3.44 5.58 3.60 61 I8_AR1 ActiveIntronRegion 0 10.10 8.91 16.44 7.90 7.55 6.36 4.29 1.33 1.45 7.30 34.62 7.40 0.00 59.04 29.75 41.95 24.49 46.59 7.30 7.38 5.94 9.23 4.35 62 I8_SR1 SilentIntronRegion 1 12.82 10.30 25.03 8.40 1.81 8.84 11.52 3.41 1.36 9.48 38.66 2.96 1.60 66.76 27.53 48.23 37.65 56.51 12.48 24.34 5.32 8.76 3.29 63 I8_AR2 ActiveIntronRegion 0 8.96 7.79 8.47 5.32 3.24 5.18 5.60 5.71 2.60 4.48 26.88 6.47 4.06 61.63 24.74 26.96 26.62 19.08 4.49 16.73 1.77 2.95 3.55 64 E9_Aa NovelBoundary 1 16.97 6.71 31.10 13.29 0.00 0.00 16.87 13.14 0.00 5.18 9.69 0.00 0.00 85.11 18.30 51.27 42.82 56.63 27.39 26.97 2.84 0.00 4.01 65 ER9a ExonRegion 0 63.38 21.91 58.86 18.99 18.12 34.97 30.41 15.87 9.24 36.87 104.75 10.92 6.45 227.14 129.34 147.83 107.99 111.85 21.68 55.58 25.27 24.32 26.40 66 E9_Da NovelBoundary 0 16.67 6.05 23.42 8.66 3.65 2.78 16.08 0.00 0.00 11.36 15.85 0.00 6.17 44.68 25.59 14.36 40.11 61.56 0.00 11.57 0.00 5.27 0.00 67 E9a_E10a KnownJunction 1 80.24 26.44 49.17 14.42 15.37 16.52 16.87 6.53 8.01 32.02 104.61 0.00 0.00 147.63 113.98 150.90 61.99 75.32 14.40 39.76 6.30 20.02 24.67 68 I9 Intron 0 5.89 6.91 10.16 7.53 1.65 7.37 7.37 4.78 0.57 4.75 15.53 3.15 0.00 52.74 27.17 11.94 11.22 18.47 0.98 11.84 2.04 2.58 4.54 69 I9_SR1 SilentIntronRegion 0 5.96 6.97 10.28 7.63 1.67 7.46 7.45 4.84 0.58 4.81 15.71 3.19 0.00 53.37 27.50 12.09 11.36 18.69 1.00 11.98 2.07 2.61 4.59 70 E10_Aa NovelBoundary 0 16.60 16.38 19.51 7.52 0.00 8.01 12.50 0.00 1.79 10.21 20.16 6.75 0.00 21.48 41.41 31.19 18.51 49.00 0.00 20.45 0.00 5.88 8.11 71 ER10a ExonRegion 1 54.28 25.74 60.17 14.15 10.81 21.78 21.52 11.42 8.96 33.85 91.47 3.38 4.98 172.27 141.39 118.36 98.35 84.92 20.90 66.83 23.98 21.38 15.47 72 E10a_E11a KnownJunction 0 86.24 45.78 74.30 7.92 16.21 31.29 35.29 16.72 4.86 44.83 127.56 13.35 0.00 216.44 153.41 129.11 119.12 102.06 16.28 80.28 25.82 23.21 32.52 73 I10 Intron 0 12.64 9.89 9.99 3.28 4.33 3.42 10.05 2.88 1.37 4.89 12.98 8.68 2.40 37.17 21.72 22.57 13.96 12.12 4.75 10.32 1.10 3.37 2.19 74 I10_SR1 SilentIntronRegion 0 12.70 9.93 10.04 3.30 4.35 3.44 10.09 2.90 1.38 4.91 13.05 8.72 2.41 37.35 21.82 22.68 14.03 12.17 4.78 10.37 1.10 3.39 2.20 75 E11_Aa NovelBoundary 0 14.08 17.89 16.47 5.19 12.99 7.21 22.61 0.00 1.74 9.48 7.58 6.30 0.00 32.49 22.87 15.81 44.04 23.30 0.00 17.13 5.37 2.69 3.67 76 ER11a ExonRegion 0 68.76 48.57 83.49 28.66 19.13 33.09 32.93 21.24 7.44 48.64 103.74 6.74 6.11 219.73 144.04 135.93 111.30 121.92 29.81 87.63 21.68 24.67 20.62 77 E11a_E12a KnownJunction 0 96.31 59.73 74.07 31.36 27.08 15.39 50.61 22.63 3.91 44.11 53.80 38.11 0.00 206.49 116.69 73.40 70.69 88.50 26.35 55.10 17.30 32.94 20.32 78 E11a_E12b KnownJunction 0 0.00 0.00 1.71 0.00 0.00 0.00 0.00 0.00 0.00 3.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.97 0.00 0.00 0.00 0.00 0.00 79 I11 Intron 0 8.50 1.44 13.37 2.88 3.79 0.87 1.88 2.43 0.43 6.05 3.19 0.00 0.00 6.90 5.40 7.02 5.46 17.34 1.50 3.01 0.52 0.00 2.08 80 I11_SR1 SilentIntronRegion 0 3.82 1.44 15.75 0.89 1.58 0.00 0.66 1.88 0.22 6.88 4.43 0.00 0.00 5.49 5.18 9.78 0.83 18.57 0.31 2.81 1.09 0.00 0.00 81 I11_AR1 ActiveIntronRegion 0 18.06 3.25 20.36 5.39 11.67 0.43 4.17 4.52 1.24 8.88 2.51 0.00 0.00 10.78 7.78 7.59 8.85 23.90 6.10 3.62 0.00 0.00 1.50 82 E12_Aa NovelBoundary 0 19.78 6.31 26.67 3.60 4.24 0.00 6.32 0.00 1.13 11.68 9.69 0.00 5.84 5.47 4.45 16.83 9.16 27.32 13.27 12.85 0.00 0.00 0.00 83 ER12a ExonRegion 0 104.31 76.07 107.18 57.21 30.49 42.05 62.69 40.90 8.23 51.99 149.09 31.08 7.50 304.74 210.20 177.85 169.55 140.96 35.82 112.00 29.00 34.60 26.01 84 E12_Ab KnownBoundary 0 107.65 60.91 169.98 86.54 43.80 84.55 103.08 59.02 13.72 82.33 182.10 54.77 18.99 382.84 309.17 199.69 168.68 132.11 48.75 152.00 38.18 25.53 31.41 85 ER12b ExonRegion 0 69.45 51.67 90.32 28.28 23.34 28.06 33.38 30.77 9.35 48.37 109.47 35.16 12.62 178.92 170.20 110.97 111.11 93.36 21.16 81.07 14.92 27.25 20.71