Order	SeqName	SeqType	IsAE	NBL01_MYCN	NBL05_MYCN	NBL09_MYCN	NBL10_MYCN	NBL02	NBL03	NBL04	NBL06	NBL07	NBL08	NBL11_Rel2	NBL11_Rem1	NBL11_Rel1	NBL12_Rel_Left	NBL12_Rel_Right	NBL13_Rel_Left	NBL13_Rel_Right	NBL14_MYCN_Met	NBL14_MYCN_Pri	NBL15_MYCN_Rel1	SKP01	SKP02	SKP03
1	GTF2A2	Gene	0	58.96	103.00	80.45	77.17	60.10	72.43	60.10	64.70	42.54	93.40	100.83	94.26	42.49	100.04	149.72	129.06	84.40	47.53	151.76	65.13	25.75	101.62	79.84
2	480768	Transcript	0	9.69	8.45	2.33	5.15	6.89	7.13	11.20	2.57	2.40	3.39	5.12	6.29	8.78	9.59	11.83	11.36	9.20	3.86	7.33	8.96	5.18	3.05	7.61
3	396060	Transcript	0	12.89	23.45	13.41	18.11	15.97	16.38	13.56	13.67	11.32	19.98	6.47	7.64	6.56	5.32	7.67	4.05	4.90	4.73	7.60	10.14	3.20	9.60	2.69
4	484743	Transcript	0	10.82	2.70	0.00	4.23	0.00	0.00	0.00	2.42	1.74	2.79	4.63	0.00	0.00	2.30	0.00	0.00	0.00	1.70	0.00	2.43	0.00	11.94	0.00
5	396064	Transcript	0	0.00	2.76	7.39	10.95	8.49	8.29	18.59	1.89	1.53	8.54	12.42	13.35	0.00	0.00	0.00	0.00	4.21	5.84	4.71	0.00	3.15	8.70	0.00
6	396063	Transcript	0	1.14	1.10	2.22	3.16	3.76	3.20	2.02	1.90	1.29	2.23	5.96	5.44	3.00	2.90	3.43	3.46	3.36	0.99	2.22	3.57	0.68	2.08	1.37
7	267869	Transcript	0	0.00	5.85	0.00	3.80	4.24	0.00	0.00	0.00	1.79	1.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.66	0.00	0.00
8	472508	Transcript	0	0.69	0.71	0.91	0.70	0.94	0.00	1.38	0.45	0.32	2.03	1.02	0.76	0.00	1.87	0.36	0.52	0.58	0.97	0.56	0.37	0.73	0.00	0.51
9	396061	Transcript	0	2.62	1.11	6.84	0.56	6.38	5.26	4.59	3.52	0.64	6.36	9.80	0.65	3.91	6.75	9.21	8.34	11.42	11.40	3.08	7.42	4.42	2.73	1.85
10	ER1a	ExonRegion	0	2.12	0.00	0.00	0.00	0.00	0.00	0.66	0.00	0.00	0.00	2.42	0.00	1.17	4.06	4.35	8.92	4.13	0.00	0.00	0.00	2.20	0.00	0.00
11	ER1b	ExonRegion	0	4.23	0.23	0.00	0.00	0.00	7.74	1.91	0.00	0.14	0.51	5.80	0.00	4.69	16.51	12.25	20.14	9.17	0.00	0.00	0.12	4.41	1.50	0.00
12	E1_Ae	KnownBoundary	1	26.23	37.30	5.71	8.56	35.48	98.92	64.83	7.48	5.84	13.97	21.27	0.00	0.00	8.95	61.19	106.30	26.55	10.11	47.44	3.20	30.64	40.72	45.93
13	ER1c	ExonRegion	0	4.23	2.03	2.25	1.36	2.68	11.00	8.83	0.00	1.24	2.29	5.80	0.00	4.69	22.20	41.10	23.78	9.90	0.00	0.00	2.13	6.61	7.64	2.94
14	E1_Af	KnownBoundary	0	0.00	0.00	6.95	7.76	0.00	0.00	2.25	2.34	1.74	3.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.09	0.00	0.00
15	ER1d	ExonRegion	0	4.23	2.27	3.39	1.76	3.46	12.41	11.45	0.31	1.38	4.05	5.80	4.07	4.69	26.94	73.56	29.55	9.90	0.00	1.12	5.51	6.61	11.28	5.87
16	E1_Ag	KnownBoundary	1	123.06	123.73	171.34	143.24	80.90	213.80	133.72	141.46	76.33	171.86	58.86	5.85	0.00	265.53	425.99	643.59	115.38	70.10	648.87	255.29	27.74	368.99	451.31
17	ER1e	ExonRegion	1	29.93	38.20	27.31	17.52	32.49	85.27	50.97	2.22	6.09	29.00	24.58	10.21	0.67	186.19	518.70	209.75	59.42	8.18	210.23	111.40	17.79	157.01	135.09
18	ER1f	ExonRegion	1	119.05	153.54	43.19	35.44	94.99	351.63	186.68	8.21	15.44	59.64	118.87	17.32	39.87	738.57	1088.70	643.47	273.97	27.25	935.70	213.30	87.05	424.00	483.81
19	ER1g	ExonRegion	1	105.16	145.41	58.28	41.26	105.93	329.56	207.97	19.44	26.61	90.62	250.03	24.14	36.43	563.66	604.97	521.42	496.31	38.42	865.68	149.69	88.90	350.23	349.70
20	E1_Da	KnownBoundary	0	10.74	0.00	6.89	0.00	0.00	10.33	0.00	0.00	1.22	1.67	2.53	0.00	0.00	0.00	4.45	0.00	0.00	7.54	9.04	0.00	0.00	0.00	0.00
21	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	2.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	E1a_E4a	KnownJunction	1	41.49	88.73	41.13	20.94	56.37	36.06	60.68	42.02	32.73	95.20	208.00	70.22	18.51	84.82	80.35	122.28	325.95	54.47	85.93	70.82	73.08	22.90	16.30
24	E1a_E6a	KnownJunction	0	0.00	5.85	0.00	3.80	4.24	0.00	0.00	0.00	1.79	1.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.66	0.00	0.00
25	ER1h	ExonRegion	0	1.61	2.21	5.34	1.12	1.22	0.98	1.01	3.01	1.29	3.82	6.60	1.30	1.16	6.27	7.67	8.91	5.63	9.95	2.29	3.09	3.09	3.26	3.70
26	E1b_E4a	KnownJunction	0	3.63	0.00	8.34	0.00	11.54	9.54	8.17	4.03	0.00	8.89	13.00	0.00	6.66	7.24	10.75	7.78	17.20	12.85	3.86	11.76	5.75	2.20	0.00
27	E2_Aa	NovelBoundary	0	0.00	3.35	3.13	3.76	19.10	0.00	4.33	2.34	0.00	2.87	5.21	0.00	0.00	4.94	10.75	0.00	13.18	3.94	0.00	0.00	9.20	0.00	0.00
28	ER2a	ExonRegion	0	3.43	3.32	5.44	9.47	3.97	2.39	2.13	4.13	3.86	3.92	8.93	16.31	8.99	6.23	3.99	10.38	10.07	2.98	6.65	4.46	2.05	6.25	4.10
29	E2_Da	NovelBoundary	0	6.59	9.34	8.52	6.19	3.23	2.61	10.69	15.53	3.56	11.95	2.68	19.66	22.89	24.43	5.19	0.00	4.39	1.95	18.45	3.26	0.00	2.94	4.35
30	E2a_E4a	KnownJunction	0	0.00	0.00	1.21	0.00	7.30	4.66	3.93	1.56	0.00	2.77	8.95	0.00	0.00	2.47	6.30	0.00	0.00	0.00	0.00	6.26	0.00	0.00	0.00
31	Ix_AR1	ActiveIntronRegion	0	3.08	5.64	3.42	8.06	2.22	2.11	6.58	5.51	4.22	6.27	2.82	18.47	16.30	3.02	3.15	1.44	5.41	4.21	3.12	3.51	0.48	5.40	5.65
32	ER3a	ExonRegion	0	2.07	2.14	2.72	2.11	2.81	0.00	4.14	1.35	0.97	4.47	3.05	2.28	0.00	5.61	1.08	1.56	1.74	2.90	1.67	1.12	2.20	0.00	1.54
33	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.61	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	E4_Aa	NovelBoundary	1	13.48	2.57	10.79	12.72	3.65	4.77	3.89	1.52	3.27	1.67	0.00	20.26	21.26	2.24	0.00	3.67	25.53	0.00	0.00	6.20	0.00	7.65	4.27
35	ER4a	ExonRegion	1	34.57	75.69	62.49	35.99	59.46	60.99	58.89	63.38	39.39	123.27	231.88	97.81	31.61	103.28	116.69	107.99	292.68	50.98	84.12	84.24	93.54	39.43	20.23
36	ER4b	ExonRegion	1	155.47	194.10	302.91	231.99	98.01	100.45	92.68	308.62	187.01	424.22	1074.86	243.69	106.12	739.42	843.49	1682.76	818.48	564.13	2297.56	362.74	279.94	637.62	1136.17
37	E4_Db	KnownBoundary	0	21.19	3.22	4.85	10.06	0.00	2.90	6.76	0.00	4.72	2.58	0.00	6.90	0.00	3.00	4.45	3.50	9.35	0.00	0.00	5.69	0.00	3.12	4.18
38	E4b_E5a	KnownJunction	1	379.77	445.51	463.32	444.57	177.33	139.07	159.87	466.56	289.61	587.58	1447.05	340.46	237.16	2422.93	3128.63	6246.22	1416.45	1152.32	8595.07	512.62	245.01	1955.74	4216.51
39	E4b_E6a	KnownJunction	0	10.82	2.70	0.00	4.23	0.00	0.00	0.00	2.42	1.74	2.79	4.63	0.00	0.00	2.30	0.00	0.00	0.00	1.70	0.00	2.43	0.00	11.94	0.00
40	ER4c	ExonRegion	0	17.27	16.89	4.65	10.30	13.77	14.26	21.73	5.15	4.80	6.78	7.83	12.58	16.39	15.12	19.31	13.81	14.26	7.73	14.66	17.91	8.15	6.10	15.22
41	E4_Dc	NovelBoundary	0	52.97	2.89	0.00	7.99	3.82	8.29	4.33	9.98	1.36	1.07	8.00	0.00	0.00	0.00	0.00	7.78	4.21	1.95	0.00	0.00	0.00	16.17	0.00
42	Ix_SR1	SilentIntronRegion	0	19.77	6.31	4.87	8.01	12.81	5.14	21.12	6.64	3.18	6.30	4.08	6.92	12.08	3.84	1.65	6.64	3.69	2.70	16.02	6.01	1.64	2.42	5.47
43	E5_Aa	NovelBoundary	1	193.07	15.52	15.17	21.68	28.35	10.62	42.00	15.07	12.24	16.60	7.53	11.85	28.41	7.42	8.90	35.12	26.74	2.24	21.74	15.34	5.31	21.98	0.00
44	ER5a	ExonRegion	0	261.96	558.79	352.09	320.42	273.74	396.52	199.39	268.40	169.52	395.38	564.81	355.84	179.38	617.83	824.37	1153.95	458.67	509.86	1179.89	332.50	146.64	443.81	694.22
45	E5a_E6a	KnownJunction	0	305.91	755.26	410.30	333.46	584.81	992.33	546.78	312.37	151.79	419.74	498.13	435.89	124.02	347.52	654.43	216.78	351.75	127.22	113.32	309.55	132.57	383.14	110.89
46	E5a_E7a	KnownJunction	0	0.00	2.76	7.39	10.95	8.49	8.29	18.59	1.89	1.53	8.54	12.42	13.35	0.00	0.00	0.00	0.00	4.21	5.84	4.71	0.00	3.15	8.70	0.00
47	I5_AR1	ActiveIntronRegion	0	13.61	2.61	7.35	6.81	2.68	1.83	9.27	3.46	4.94	12.29	1.93	12.99	4.69	4.87	5.80	0.00	0.00	0.00	3.19	0.00	0.00	3.87	0.00
48	ER6a	ExonRegion	0	255.12	542.34	477.69	466.61	433.81	629.47	499.02	364.43	244.29	518.31	470.56	595.01	224.53	414.57	754.69	239.97	323.83	115.93	184.93	335.83	98.39	462.52	99.66
49	E6a_E7a	KnownJunction	1	402.89	401.84	696.52	707.44	404.24	242.93	357.76	513.71	296.96	719.26	379.36	834.27	229.69	513.75	1064.72	383.06	340.63	109.64	182.69	408.94	36.33	625.44	127.79
50	ER7a	ExonRegion	1	329.09	389.14	661.07	643.31	325.49	201.07	300.98	487.19	303.81	683.20	352.22	802.49	239.50	431.01	829.89	265.18	242.29	92.10	186.73	321.84	36.78	674.27	126.54
51	E7_Da	KnownBoundary	0	170.40	162.14	322.11	318.14	115.11	66.16	117.38	202.33	136.05	311.73	141.61	228.22	94.31	104.77	200.63	79.98	80.04	28.15	119.34	122.27	10.87	247.26	37.22
52	E7_Db	KnownBoundary	1	171.81	309.68	248.10	275.36	121.82	99.77	96.67	189.97	151.91	271.44	123.61	274.89	113.14	60.33	210.40	38.96	78.82	20.06	42.45	150.21	21.50	180.33	15.62
53	ER7b	ExonRegion	1	324.36	535.85	608.09	616.02	288.31	168.71	217.79	456.74	312.79	658.90	330.53	738.17	324.78	318.73	699.20	165.70	188.98	66.52	157.68	272.34	30.30	567.76	78.56
54	ER7c	ExonRegion	1	245.52	469.70	308.91	287.30	187.02	141.58	134.02	243.68	151.26	342.37	178.09	411.26	158.99	161.64	366.37	88.31	97.67	27.99	76.28	154.56	17.51	335.25	31.73
55	E7_Dc	KnownBoundary	0	15.56	26.71	11.65	12.89	30.39	2.27	15.68	7.60	8.65	31.43	5.16	36.16	15.26	0.00	15.45	3.42	8.60	2.11	9.04	19.18	3.09	27.56	0.00
56	E7_Dd	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.77	1.64	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
57	E7_De	KnownBoundary	0	3.11	15.19	10.76	3.90	3.74	7.72	8.52	19.18	10.94	12.41	6.37	6.30	6.82	7.71	0.00	0.00	4.21	0.00	0.00	9.78	3.15	11.14	0.00
58	ER7d	ExonRegion	1	65.61	65.07	51.47	35.44	41.03	30.56	52.96	42.06	33.76	83.34	23.84	122.67	54.72	38.44	58.99	15.85	24.21	9.24	12.74	34.75	5.88	31.25	6.85
59	ER7e	ExonRegion	1	22.37	41.83	32.56	16.94	25.99	15.19	21.75	32.35	23.29	49.15	18.50	38.97	37.52	21.35	18.24	8.49	15.56	5.81	6.37	28.57	4.41	26.79	2.94
60	ER7f	ExonRegion	0	12.89	23.45	13.41	18.11	15.97	16.38	13.56	13.67	11.32	19.98	6.47	7.64	6.56	5.32	7.67	4.05	4.90	4.73	7.60	10.14	3.20	9.60	2.69