Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 LRRC49 Gene 0 29.97 216.89 72.75 91.41 70.36 163.44 78.62 89.72 115.77 94.01 14.17 23.61 12.84 8.30 9.59 4.74 43.50 47.98 79.77 69.57 26.01 41.96 19.83 2 443425 Transcript 0 0.35 3.39 1.53 1.25 2.01 6.27 4.19 3.46 5.25 3.63 0.81 1.08 0.00 0.14 0.00 0.25 3.03 4.62 1.06 3.19 3.31 1.22 2.45 3 260382 Transcript 0 4.08 64.08 13.32 12.63 29.00 92.52 56.65 21.07 41.98 31.11 10.28 7.29 0.00 3.12 2.27 4.01 17.50 44.55 30.84 36.79 32.10 17.92 24.60 4 436542 Transcript 0 0.02 0.02 0.00 0.95 2.55 0.43 2.17 0.78 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.50 0.00 0.00 0.00 5 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 Ix_AR1 ActiveIntronRegion 0 4.14 5.75 9.53 9.50 5.24 5.78 9.79 6.72 4.00 10.97 13.24 11.77 13.72 10.20 4.75 4.85 7.90 8.29 5.89 4.63 0.24 2.04 1.92 7 E2_Aa NovelBoundary 0 8.89 40.12 3.46 0.00 16.04 72.97 39.66 2.18 3.15 8.68 6.48 12.75 0.00 2.30 0.00 0.00 7.67 20.52 30.21 2.81 11.92 8.14 7.85 8 ER2a ExonRegion 0 5.19 75.15 17.86 12.03 24.39 95.03 55.88 14.96 25.80 24.62 8.24 1.97 0.00 3.78 4.54 4.52 17.51 47.61 50.00 29.93 36.47 19.68 17.96 9 E2a_E3b KnownJunction 0 2.96 53.02 8.78 13.22 33.62 90.00 57.41 27.19 58.16 37.61 12.32 12.60 0.00 2.47 0.00 3.50 17.48 41.49 11.67 43.66 27.74 16.17 31.24 10 ER3a ExonRegion 0 0.71 6.78 3.06 2.50 4.01 12.53 8.39 6.91 10.50 7.26 1.61 2.16 0.00 0.27 0.00 0.50 6.05 9.24 2.12 6.38 6.61 2.43 4.89 11 ER3b ExonRegion 0 4.12 49.35 30.42 19.76 17.11 64.74 25.01 32.50 50.73 60.52 16.77 17.32 1.01 4.52 0.67 0.48 40.20 40.68 28.90 34.84 33.49 27.57 25.22 12 E3a_E4a KnownJunction 0 6.00 60.45 59.37 40.42 11.88 70.41 39.08 46.29 72.92 86.33 31.90 26.56 6.98 5.12 5.19 0.00 65.64 47.51 80.19 52.86 53.19 31.35 37.82 13 ER4a ExonRegion 0 6.42 77.04 39.21 35.36 23.26 61.74 40.05 50.18 55.59 82.34 23.41 20.37 8.21 16.11 10.88 14.49 66.99 85.82 99.43 89.70 36.64 39.99 32.64 14 E4a_E6a KnownJunction 0 6.82 71.17 44.50 25.97 26.32 95.29 46.59 36.10 38.77 80.24 22.43 12.00 19.80 7.89 4.45 4.36 36.47 63.17 64.19 86.35 10.44 34.47 36.54 15 E4a_E7a NovelJunction 0 0.00 17.63 0.00 6.99 7.72 9.54 8.17 18.24 38.05 12.03 0.00 0.00 0.00 2.41 5.19 0.00 0.00 12.23 8.38 11.89 0.00 3.12 3.33 16 ER5a ExonRegion 0 0.04 0.04 0.00 1.90 0.76 0.86 4.35 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 3.09 0.00 0.00 1.00 0.00 0.00 0.00 17 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 4.33 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER6a ExonRegion 0 9.21 104.80 36.70 28.90 58.74 181.87 106.03 32.07 49.85 73.15 12.82 23.71 19.17 5.93 1.75 3.98 31.05 36.52 46.23 59.66 16.32 41.06 18.05 19 E6a_E7a KnownJunction 1 15.78 210.88 38.82 34.33 35.40 276.37 176.03 43.42 57.18 97.37 6.26 49.97 6.82 17.31 0.00 0.00 43.57 40.54 55.91 44.17 19.40 70.48 32.61 20 ER7a ExonRegion 1 12.60 171.61 34.63 45.64 43.93 146.02 84.34 51.85 90.84 91.17 11.77 43.80 13.68 14.08 8.13 7.82 41.89 38.97 48.58 67.27 16.67 51.55 23.88 21 E7a_E8a KnownJunction 0 13.26 120.70 34.03 30.03 55.86 122.26 71.32 52.66 79.05 97.91 12.00 44.71 8.12 16.01 10.75 7.86 35.34 28.19 55.44 74.59 8.90 29.39 28.00 22 ER8a ExonRegion 1 11.12 175.68 49.34 38.51 48.96 139.40 60.61 59.26 75.47 93.04 8.60 46.78 11.06 8.27 16.67 5.01 32.17 24.99 63.09 55.89 6.22 47.52 25.82 23 E8_Da NovelBoundary 0 0.00 102.88 4.55 9.76 10.78 0.00 18.42 12.45 30.84 14.94 0.00 0.00 6.82 0.00 6.18 0.00 4.77 6.30 0.00 4.92 5.99 14.21 4.18 24 E8a_E9a KnownJunction 0 21.11 132.81 64.84 61.86 37.61 192.28 91.59 48.02 66.96 94.90 10.06 30.76 12.34 11.65 9.64 3.25 17.48 12.52 57.04 38.73 16.87 38.15 22.45 25 I8 Intron 0 2.03 16.32 3.37 15.26 10.62 24.44 13.98 18.72 36.17 8.96 2.50 3.28 3.52 0.82 0.67 0.74 9.18 5.31 4.97 12.33 4.33 8.01 2.65 26 I8_SR2 SilentIntronRegion 0 1.26 9.70 6.54 15.35 10.91 24.06 19.74 15.36 28.73 8.33 1.92 1.42 2.69 1.37 1.43 0.00 12.80 6.58 4.43 16.92 6.57 6.01 4.38 27 I8_SR3 SilentIntronRegion 0 1.11 11.60 2.11 9.95 7.87 22.21 13.86 14.07 31.70 8.55 2.84 4.33 4.25 0.78 0.66 0.83 7.74 3.64 4.35 11.62 3.62 8.97 1.85 28 I8_AR1 ActiveIntronRegion 0 5.39 27.99 4.21 30.54 17.88 37.50 12.75 34.43 59.60 11.83 3.23 1.42 1.84 0.49 0.00 1.42 11.56 9.73 8.62 12.02 5.44 9.12 3.97 29 E9_Aa NovelBoundary 0 3.11 67.69 0.00 31.53 15.62 79.22 18.42 70.93 97.71 24.93 2.68 6.30 0.00 2.35 0.00 0.00 4.39 4.23 8.09 20.20 2.90 18.68 4.18 30 ER9a ExonRegion 0 26.09 203.64 66.25 100.21 88.39 211.17 88.31 108.34 126.65 112.90 18.95 38.88 19.48 13.96 9.73 7.95 42.38 55.71 68.07 84.57 16.80 51.60 25.51 31 E9a_E10a KnownJunction 0 17.19 335.07 66.11 158.09 88.79 217.55 90.75 140.19 169.01 124.34 24.11 21.01 19.80 9.42 9.64 4.27 36.00 77.81 140.71 93.32 43.37 69.68 21.77 32 ER10a ExonRegion 0 21.64 259.15 78.72 141.54 70.56 188.08 76.68 132.62 150.07 119.22 30.90 26.26 23.90 13.15 8.19 6.95 67.93 73.19 79.02 112.32 44.57 52.52 25.67 33 E10a_E11a KnownJunction 0 35.27 266.93 81.37 110.94 80.56 187.16 81.30 140.80 132.87 111.77 27.06 32.56 20.45 10.24 9.02 7.26 85.27 73.17 67.01 110.90 48.19 53.95 31.33 34 ER11a ExonRegion 0 32.55 256.57 79.38 128.30 78.92 246.04 90.52 126.60 133.18 105.45 24.47 26.62 27.06 11.06 11.10 9.38 70.01 103.69 95.63 100.52 44.51 45.36 26.29 35 E11a_E12a KnownJunction 0 34.01 225.42 58.42 116.64 96.86 315.56 127.37 97.43 105.09 106.10 13.95 37.21 33.28 14.07 0.00 12.56 57.50 77.35 117.18 100.73 23.23 46.97 14.94 36 ER12a ExonRegion 0 37.39 245.19 79.53 139.74 106.74 240.82 106.26 96.42 148.93 125.09 23.72 30.62 15.91 13.01 12.99 8.49 84.53 82.62 125.03 101.32 43.81 53.13 24.19 37 E12a_E13a KnownJunction 0 42.01 332.70 97.96 143.44 88.62 165.47 75.03 119.11 171.50 151.53 26.85 17.26 13.80 14.42 14.83 7.69 55.82 84.73 142.40 125.28 45.65 53.58 25.35 38 ER13a ExonRegion 0 39.07 332.54 79.75 119.69 80.04 226.74 108.48 108.63 139.83 121.24 25.23 26.72 19.30 11.73 10.10 3.97 60.78 74.29 126.46 88.31 57.19 48.53 23.80 39 E13a_E14a KnownJunction 0 42.23 275.94 103.16 119.67 103.14 320.55 83.16 126.10 147.60 152.60 19.43 0.00 32.14 21.90 13.35 6.84 60.87 108.28 142.31 82.77 66.35 69.68 24.84 40 ER14a ExonRegion 0 29.58 184.80 110.83 148.38 82.07 228.87 95.54 127.00 180.09 132.83 21.80 29.65 18.76 11.46 13.73 5.51 85.16 88.75 167.49 103.75 41.57 66.03 29.67 41 E14a_E15a KnownJunction 0 61.05 289.55 109.99 143.24 114.52 341.34 113.41 140.97 202.37 137.48 25.53 12.60 47.56 20.19 39.43 0.00 43.76 64.25 138.17 108.34 25.39 56.95 12.21 42 ER15a ExonRegion 0 55.77 225.42 95.05 121.06 97.02 242.99 116.53 116.93 175.38 115.25 19.62 26.12 23.68 10.94 18.39 4.07 55.81 51.63 109.30 98.18 27.91 50.14 23.49 43 E15a_E16a KnownJunction 0 55.42 283.17 96.12 132.12 101.02 227.54 104.14 154.07 216.20 131.17 14.42 6.30 6.82 19.90 32.39 0.00 51.05 38.84 91.58 84.95 31.38 71.77 8.28 44 ER16a ExonRegion 0 48.53 278.88 97.82 108.55 81.66 176.63 69.46 113.15 172.87 108.65 19.61 25.50 17.82 7.26 12.92 2.76 48.43 43.44 91.39 85.74 28.85 50.10 21.14 45 E16a_E17a KnownJunction 0 48.75 278.96 102.01 136.25 159.42 161.61 74.99 119.32 181.48 107.31 17.74 43.96 6.82 10.83 9.64 0.00 52.92 31.67 51.48 64.11 18.04 33.80 20.06 46 ER17a ExonRegion 0 56.53 255.68 108.34 135.46 153.20 240.00 128.91 142.83 169.98 121.10 16.64 38.57 22.78 9.19 16.18 3.94 43.68 35.29 93.95 70.92 15.07 60.35 15.88 47 E17a_E18a KnownJunction 1 61.94 361.51 106.41 141.77 178.18 306.70 142.42 180.81 157.67 137.13 11.85 77.28 6.33 11.83 25.34 0.00 37.59 23.30 37.08 64.88 2.59 53.52 22.45 48 ER18a ExonRegion 0 43.42 332.54 101.95 115.60 80.75 130.04 66.33 113.70 130.98 102.41 5.26 17.71 5.82 4.26 8.39 2.21 27.31 21.21 63.59 58.30 13.14 34.71 12.29 49 IG49 Intergenic 0 0.98 14.31 5.15 5.56 5.87 13.86 8.89 11.06 14.82 6.54 0.06 0.23 0.00 0.09 0.10 0.14 1.96 3.89 6.07 10.73 1.06 0.53 1.13 50 IG49_SR1 SilentIntergenicRegion 0 0.86 63.41 8.35 6.50 8.99 32.92 9.44 14.99 18.02 9.57 0.00 0.00 0.00 0.00 0.00 0.00 0.59 1.05 6.60 15.06 0.00 1.43 2.00 51 IG49_SR2 SilentIntergenicRegion 0 0.99 11.79 4.97 5.52 5.71 12.88 8.86 10.85 14.63 6.37 0.07 0.24 0.00 0.09 0.10 0.15 2.02 4.03 6.03 10.52 1.11 0.49 1.09