Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CALML4 Gene 0 69.94 92.24 63.86 70.61 63.62 83.40 48.39 62.10 50.79 67.69 32.10 52.08 43.90 40.72 33.79 47.80 32.98 31.54 24.93 51.23 10.56 20.73 16.00 2 395465 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 354678 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 395463 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 315415 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 467889 Transcript 0 17.48 3.16 7.84 8.26 24.02 5.56 4.15 10.56 3.59 0.00 2.47 0.00 0.00 11.01 8.90 0.00 4.77 7.42 0.00 0.00 2.66 8.76 0.00 7 448060 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 478113 Transcript 0 3.78 2.03 1.44 0.68 2.68 3.91 3.31 2.14 2.60 0.70 0.97 0.00 0.00 0.00 1.45 0.00 0.00 0.00 1.59 1.06 0.00 1.04 0.00 9 467188 Transcript 0 45.86 27.20 75.14 53.75 30.43 59.25 21.19 25.55 36.80 47.09 41.27 22.56 20.93 37.75 54.27 57.41 42.16 44.71 27.17 39.80 21.05 11.40 21.39 10 IG28 Intergenic 0 8.33 15.30 30.66 17.52 7.90 30.36 13.64 25.94 21.31 35.82 16.67 7.83 4.38 25.65 15.20 29.94 30.58 50.45 28.03 40.52 12.12 6.63 19.04 11 IG28_AR1 ActiveIntergenicRegion 0 6.90 15.20 35.96 19.85 7.85 32.87 14.74 25.53 22.84 38.87 17.98 9.07 5.18 26.62 15.13 31.84 29.56 55.85 32.52 47.41 14.30 7.85 18.64 12 IG28_SR1 SilentIntergenicRegion 0 11.85 15.68 18.04 12.01 8.08 24.52 11.10 27.16 17.77 28.68 13.63 4.89 2.46 23.51 15.50 25.56 33.25 37.74 17.38 24.17 6.95 3.75 20.15 13 ER1a ExonRegion 0 1.43 5.25 12.67 8.55 20.15 32.09 13.50 5.55 9.64 22.64 12.38 0.49 2.04 20.35 13.62 26.03 26.57 26.23 22.45 38.02 7.39 5.18 9.24 14 E1_Ab KnownBoundary 0 3.04 6.58 32.20 18.65 43.04 77.34 23.19 28.42 26.01 56.84 31.69 0.00 6.82 16.78 34.74 46.83 37.87 63.71 71.63 66.79 5.56 6.25 15.54 15 ER1b ExonRegion 0 13.06 14.19 34.17 20.80 17.34 46.71 17.71 27.61 23.95 51.42 14.34 7.76 6.20 33.27 15.21 44.49 31.24 50.40 32.28 41.86 14.83 7.86 24.58 16 E1_Ac KnownBoundary 0 16.97 16.31 48.46 43.65 12.73 72.00 29.41 45.22 23.84 41.90 19.64 18.31 6.82 36.14 24.72 41.27 15.71 86.64 24.47 59.51 21.07 6.00 35.51 17 ER1c ExonRegion 0 15.18 18.73 35.78 26.54 15.60 38.65 18.18 38.65 23.66 48.65 17.35 8.39 5.45 34.41 20.90 31.34 22.23 68.17 29.66 44.56 14.47 13.27 24.01 18 E1_Ad KnownBoundary 0 12.59 46.04 20.19 11.65 7.56 61.27 19.96 23.25 15.51 41.64 7.48 0.00 0.00 30.31 22.99 39.39 25.06 44.31 21.37 33.75 9.02 2.63 16.39 19 ER1d ExonRegion 0 30.69 32.30 39.79 23.61 37.78 55.23 20.83 37.37 18.71 44.53 5.34 2.42 3.45 29.33 17.15 25.26 26.60 57.66 15.74 41.61 22.56 6.50 16.07 20 E1_Ae KnownBoundary 0 82.38 29.14 47.78 34.66 75.21 68.99 29.99 45.18 18.89 27.48 7.11 6.30 6.82 31.73 18.42 26.92 29.55 57.91 12.33 43.21 36.02 19.59 20.23 21 ER1e ExonRegion 0 73.60 18.07 29.71 23.86 44.23 52.21 19.23 33.98 14.26 24.39 5.25 1.88 1.86 22.58 17.30 14.69 16.07 37.93 14.91 32.84 18.42 10.65 4.88 22 E1_Da NovelBoundary 0 7.56 18.35 15.43 9.42 6.79 27.20 26.59 13.47 7.55 22.48 7.63 11.70 0.00 18.31 4.45 12.05 7.76 31.42 23.81 41.67 5.62 0.00 16.30 23 E1a_E2a KnownJunction 0 73.49 0.00 14.10 12.32 36.84 37.88 4.50 14.50 6.45 13.54 2.63 0.00 0.00 10.12 15.45 0.00 9.54 15.75 13.37 6.52 3.03 0.00 0.00 24 E1a_E3a KnownJunction 0 28.45 0.00 0.00 0.00 0.00 0.00 2.25 7.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.88 0.00 0.00 0.00 25 E1a_E4b KnownJunction 0 7.56 0.00 1.66 0.00 0.00 2.33 0.00 2.55 2.72 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 E1a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 I1 Intron 0 0.00 3.35 3.00 1.11 1.47 13.07 3.63 2.83 4.04 6.56 4.24 0.00 0.00 6.55 6.55 8.15 14.48 5.54 0.00 14.00 3.63 2.29 1.61 28 I1_AR1 ActiveIntronRegion 0 0.00 3.42 3.07 1.14 1.50 13.36 3.70 2.87 4.13 6.69 4.33 0.00 0.00 6.66 6.70 8.30 14.80 5.67 0.00 14.31 3.71 2.34 1.65 29 E2_Aa NovelBoundary 0 3.70 21.64 27.38 16.65 15.79 24.70 21.37 17.50 7.70 24.28 4.84 0.00 6.33 18.13 4.45 11.79 3.93 9.78 31.15 25.50 8.28 2.82 16.30 30 E2_Da NovelBoundary 0 7.56 11.51 13.42 9.19 22.67 29.76 31.71 18.48 16.29 25.98 5.37 17.26 5.84 26.37 29.42 35.80 8.98 32.04 32.10 44.74 0.00 8.39 17.07 31 E2a_E3a KnownJunction 0 17.48 3.16 7.84 8.26 24.02 5.56 4.15 10.56 3.59 0.00 2.47 0.00 0.00 11.01 8.90 0.00 4.77 7.42 0.00 0.00 2.66 8.76 0.00 32 E2a_E4b KnownJunction 0 2.89 0.00 3.25 0.00 3.31 8.12 0.00 0.00 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.68 2.03 0.00 0.00 2.97 0.00 0.00 33 ER2a ExonRegion 0 34.21 2.03 12.41 11.25 21.58 22.42 3.67 14.22 7.89 5.96 3.12 0.00 0.15 10.48 8.14 0.10 8.94 10.31 7.71 3.98 5.62 5.24 0.00 34 I2 Intron 0 8.74 17.50 36.01 22.29 17.48 32.20 16.38 18.92 17.72 27.94 11.66 7.65 4.15 20.87 12.90 29.38 22.82 36.37 18.83 21.99 12.03 6.84 12.23 35 I2_AR1 ActiveIntronRegion 0 7.16 13.82 16.21 15.08 14.76 35.26 14.13 10.97 17.32 29.82 10.35 5.66 3.05 23.15 16.38 29.27 24.03 28.40 25.69 33.66 9.06 3.76 10.53 36 I2_SR1 SilentIntronRegion 0 14.33 23.96 35.46 25.11 24.40 35.67 20.65 22.26 16.02 28.48 12.16 15.16 6.14 23.48 15.59 32.08 24.35 36.24 20.58 25.75 10.66 10.10 10.49 37 I2_AR2 ActiveIntronRegion 0 5.37 16.73 48.45 25.29 13.79 30.11 14.92 22.13 21.42 32.55 13.15 4.85 3.14 20.12 10.28 31.03 21.92 45.57 18.81 18.15 15.93 6.36 13.74 38 I2_SR2 SilentIntronRegion 0 6.70 10.68 24.03 16.02 14.48 29.44 13.42 11.79 14.29 18.77 9.00 1.94 3.31 17.38 11.95 22.76 21.65 24.48 13.57 18.21 8.79 4.04 13.06 39 E3_Aa NovelBoundary 0 14.00 9.47 46.57 17.85 14.69 84.84 39.97 20.66 17.85 31.29 14.64 12.00 0.00 28.14 4.33 10.94 27.21 57.45 15.53 14.96 6.30 0.00 3.76 40 ER3a ExonRegion 0 57.39 20.58 35.67 15.82 29.07 34.97 14.24 34.01 21.84 30.24 9.65 6.76 1.40 25.88 22.90 16.82 11.24 24.36 15.47 26.23 10.83 7.82 13.91 41 E3_Da NovelBoundary 0 10.96 14.67 33.32 21.51 0.00 15.79 5.56 6.04 18.69 27.80 5.16 0.00 0.00 17.19 9.64 50.24 25.81 48.13 9.60 27.93 5.50 11.70 32.27 42 E3a_E4b KnownJunction 0 42.90 10.00 20.34 16.45 18.00 4.32 0.00 30.76 10.39 11.85 4.90 0.00 0.00 24.90 27.81 4.36 4.68 23.84 13.84 5.94 4.82 8.82 0.00 43 I3 Intron 1 43.47 34.57 51.71 49.26 29.11 56.66 25.87 34.90 35.63 46.76 38.69 26.38 19.76 36.57 44.94 60.01 38.80 43.23 29.79 33.57 19.06 10.74 19.51 44 I3_SR1 SilentIntronRegion 1 10.89 18.08 35.03 18.69 22.12 32.89 15.69 20.89 15.50 30.12 14.77 6.83 4.13 11.51 15.17 31.98 27.29 38.38 18.38 32.19 13.73 5.84 15.11 45 I3_AR1 ActiveIntronRegion 1 56.29 41.09 58.34 61.31 31.91 66.06 29.89 40.45 43.57 53.36 48.11 34.07 25.91 46.43 56.66 71.08 43.39 45.23 34.31 34.18 21.18 12.68 21.27 46 E4_Aa NovelBoundary 0 70.38 33.48 103.43 100.39 25.13 67.80 27.56 60.54 68.08 94.66 24.27 12.15 21.26 36.79 72.81 82.88 34.50 38.01 53.37 63.09 27.49 29.21 8.71 47 ER4a ExonRegion 0 45.86 27.20 75.14 53.75 30.43 59.25 21.19 25.55 36.80 47.09 41.27 22.56 20.93 37.75 54.27 57.41 42.16 44.71 27.17 39.80 21.05 11.40 21.39 48 E4_Ab KnownBoundary 0 80.46 64.86 98.34 101.39 41.17 131.69 53.97 58.33 56.45 95.57 30.38 12.15 47.72 62.51 39.56 45.03 73.59 87.63 37.18 65.13 28.42 23.09 30.05 49 ER4b ExonRegion 0 115.22 51.11 129.52 85.27 97.68 145.87 59.31 89.63 72.41 97.57 39.38 32.24 32.95 66.67 76.40 80.09 49.43 67.40 62.35 68.93 33.18 19.21 37.79 50 E4_Da NovelBoundary 0 57.05 8.95 19.43 17.91 15.87 16.87 6.40 13.60 5.90 23.99 10.00 6.30 6.33 16.89 10.75 16.32 4.77 22.84 16.28 20.01 11.18 2.39 10.84 51 E4a_E5a KnownJunction 0 53.94 24.21 136.96 75.15 74.19 73.76 35.24 91.51 68.32 84.29 34.01 25.96 7.30 84.05 38.07 58.96 59.56 37.60 67.20 47.68 19.83 18.98 21.08 52 I4 Intron 0 18.60 10.90 10.57 15.26 11.98 11.99 10.24 13.12 11.58 12.89 15.68 11.00 15.93 17.84 16.71 27.61 18.18 18.76 12.65 12.67 7.47 3.32 5.89 53 I4_SR1 SilentIntronRegion 1 17.16 7.55 11.82 13.33 7.75 9.87 6.17 14.34 12.91 12.21 15.92 5.24 8.18 17.53 16.37 23.41 17.03 20.96 9.65 12.23 9.59 2.92 4.66 54 I4_AR1 ActiveIntronRegion 0 19.14 13.78 12.08 18.70 11.94 14.08 12.82 15.78 11.58 18.08 17.76 16.50 16.37 18.65 18.38 37.60 21.92 22.97 15.72 14.87 7.18 4.57 6.65 55 I4_SR2 SilentIntronRegion 0 20.04 12.90 7.88 15.07 17.33 13.06 13.38 9.60 9.97 9.81 13.82 14.00 25.32 17.65 15.88 25.29 16.79 12.83 14.07 11.58 5.08 2.86 6.87 56 E5_Aa NovelBoundary 0 33.41 12.63 28.95 31.40 23.43 11.19 51.36 11.01 13.74 14.88 21.69 5.40 25.97 9.24 19.66 31.36 20.10 28.52 16.57 23.59 6.18 2.27 3.59 57 ER5a ExonRegion 0 109.68 51.47 89.33 76.40 70.30 109.93 58.69 74.87 66.97 88.05 40.85 50.02 39.30 65.63 46.41 65.16 53.98 39.21 52.62 61.23 12.72 21.81 21.31 58 E5_Da KnownBoundary 0 6.22 8.68 16.32 27.67 11.29 30.66 18.99 10.10 16.72 23.58 5.05 11.85 6.82 4.59 4.45 23.24 20.01 13.85 13.65 17.58 2.72 5.08 3.16 59 E5_Db KnownBoundary 0 6.15 14.21 24.33 18.08 11.63 13.34 23.58 20.33 10.91 34.38 0.00 0.00 0.00 4.77 0.00 8.03 9.35 7.79 3.76 16.75 5.62 8.08 3.50 60 ER5b ExonRegion 1 27.51 34.57 55.14 50.43 45.49 49.51 63.55 48.40 35.82 74.55 13.53 38.97 14.07 50.35 11.61 38.64 39.61 25.87 38.22 40.43 8.81 18.75 5.87 61 ER5c ExonRegion 0 35.21 38.01 42.58 55.02 38.08 77.02 41.24 38.38 35.55 56.31 26.86 30.86 36.78 37.60 20.81 53.81 34.14 29.66 22.03 46.90 7.77 10.41 10.10 62 E5_Dc KnownBoundary 0 49.86 68.80 42.07 61.73 64.52 98.81 68.23 39.55 43.89 66.94 14.21 36.31 58.76 36.67 24.85 51.78 24.22 10.86 31.06 69.16 0.00 24.43 3.50 63 ER5d ExonRegion 0 134.95 239.37 102.84 131.01 125.37 106.83 77.45 117.27 90.65 97.89 48.66 120.23 88.89 43.02 51.97 40.96 30.34 13.15 15.23 63.60 7.33 44.29 15.57 64 E5_Dd KnownBoundary 0 286.79 557.07 92.52 183.49 285.74 248.32 256.89 142.86 83.19 89.99 107.24 204.97 90.42 96.89 63.91 55.80 41.98 25.58 33.88 93.96 4.94 57.93 26.38 65 ER5e ExonRegion 0 176.86 280.35 48.11 75.19 139.60 167.53 124.53 69.12 42.41 41.51 63.45 122.72 75.15 53.00 60.76 55.62 24.74 20.26 20.98 53.48 2.00 39.47 18.73 66 ER5f ExonRegion 0 0.00 4.07 1.23 1.36 5.35 5.50 6.62 1.73 2.47 0.00 1.93 0.00 0.00 0.00 2.90 0.00 0.00 0.00 3.19 2.13 0.00 2.08 0.00 67 IG27 Intergenic 0 115.52 267.55 62.94 154.02 146.59 157.09 120.46 133.28 128.27 120.04 131.23 181.44 145.01 79.78 60.91 94.47 79.53 53.17 36.85 105.61 21.91 92.63 42.35 68 IG27_AR1 ActiveIntergenicRegion 0 116.93 270.83 63.71 155.91 148.39 159.01 121.94 134.92 129.84 121.51 132.84 183.67 146.79 80.75 61.66 95.63 80.50 53.82 37.30 106.91 22.18 93.77 42.87