Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PIGB Gene 0 57.14 18.59 23.51 27.23 29.92 24.46 15.73 17.15 19.91 10.63 86.85 92.25 79.88 76.27 80.62 76.25 58.42 9.40 18.39 16.43 24.12 49.59 34.47 2 164305 Transcript 0 63.33 19.57 29.38 30.16 31.78 25.42 16.57 19.05 23.07 9.62 108.56 107.87 96.99 94.41 98.17 89.53 68.36 7.89 20.98 17.41 24.98 60.73 41.53 3 ER1a ExonRegion 0 18.48 8.76 8.38 10.36 16.80 24.33 14.20 5.25 6.85 8.90 43.62 7.38 4.19 34.54 26.61 47.39 42.65 11.51 11.87 15.04 30.24 16.98 22.71 4 E1a_E2a KnownJunction 1 3.48 3.35 4.52 12.25 3.06 5.17 6.14 6.41 4.63 1.05 105.71 12.30 0.00 104.30 46.60 52.38 66.76 1.62 0.00 17.13 17.11 14.88 22.71 5 E1a_E4a NovelJunction 0 0.00 0.00 0.00 1.96 0.00 0.00 1.77 0.00 0.00 0.00 7.26 0.00 0.00 4.71 18.79 7.95 4.58 0.00 0.00 0.00 2.90 5.76 0.00 6 I1 Intron 0 5.34 2.05 0.69 4.87 4.39 3.70 2.17 3.58 5.11 1.51 3.66 13.86 19.40 5.44 4.61 6.38 5.83 0.35 1.61 2.42 2.23 1.84 1.48 7 I1_AR1 ActiveIntronRegion 0 5.90 1.93 0.76 5.12 4.08 3.42 2.06 3.82 5.53 1.57 4.00 14.51 20.87 5.59 4.49 6.65 5.78 0.28 1.22 2.34 2.26 1.99 1.64 8 E2_Aa NovelBoundary 0 7.19 3.16 4.23 0.00 46.26 2.21 11.26 6.12 22.25 4.57 7.63 18.91 28.57 4.77 10.26 3.59 23.28 1.70 0.00 5.94 8.59 10.96 3.24 9 ER2a ExonRegion 0 15.02 7.85 10.01 19.50 14.22 10.96 7.38 11.63 22.27 3.52 65.89 42.79 54.45 78.82 46.21 57.08 47.98 11.49 9.56 12.44 8.77 38.87 36.95 10 E2a_E3a KnownJunction 0 0.00 0.00 9.17 7.66 11.46 9.03 2.34 7.64 6.48 1.67 18.69 0.00 0.00 0.00 0.00 4.19 18.51 0.00 0.00 3.26 3.34 19.53 0.00 11 I2 Intron 0 7.00 4.08 1.51 5.04 5.69 3.25 2.50 4.87 5.00 3.83 3.42 19.48 24.72 7.09 5.32 3.16 6.62 0.54 2.26 3.77 0.52 3.94 1.04 12 I2_SR1 SilentIntronRegion 0 4.63 2.96 0.00 0.00 5.81 2.67 0.96 0.00 0.00 0.00 5.63 16.33 17.02 3.76 0.00 8.66 7.21 0.00 0.00 1.55 0.00 0.00 0.00 13 I2_AR1 ActiveIntronRegion 0 8.65 4.99 2.09 6.97 6.56 3.90 3.25 6.74 6.92 5.31 3.48 23.31 29.13 8.54 6.70 2.43 7.55 0.75 3.12 4.52 0.72 5.45 1.44 14 E3_Aa NovelBoundary 0 7.26 18.15 8.04 13.19 4.33 0.00 6.67 2.55 10.36 2.47 7.32 12.15 26.62 7.24 0.00 0.00 11.78 1.78 0.00 0.00 0.00 5.45 0.00 15 ER3a ExonRegion 0 22.14 8.76 16.43 20.50 22.87 12.59 8.85 9.27 17.14 6.73 76.42 81.65 54.15 65.43 51.31 56.35 58.87 5.45 11.29 10.53 14.13 33.20 27.11 16 E3_Da NovelBoundary 0 37.56 2.57 5.50 11.29 24.11 22.66 24.64 11.95 13.83 1.67 10.32 0.00 6.82 7.18 5.56 3.76 12.72 0.00 0.00 8.63 2.78 11.94 8.19 17 E3a_E4a KnownJunction 0 32.38 6.71 37.55 16.55 20.29 10.45 2.25 6.70 14.03 1.58 71.23 141.95 81.00 101.89 59.58 68.87 93.50 11.86 13.84 7.99 13.78 48.86 40.04 18 I3 Intron 0 10.31 4.26 2.84 10.16 9.67 6.96 6.60 5.58 9.31 3.39 7.41 16.94 20.76 8.58 7.36 11.84 6.67 3.85 4.07 6.31 3.22 4.79 4.90 19 I3_SR1 SilentIntronRegion 0 13.20 4.74 3.03 11.71 10.83 7.22 7.03 6.59 10.81 4.18 8.75 16.13 20.42 8.84 7.20 13.12 7.15 4.34 4.92 6.77 4.27 4.16 5.20 20 I3_AR1 ActiveIntronRegion 0 11.62 7.36 3.21 13.88 20.43 10.74 6.21 8.83 6.71 2.44 5.27 31.09 34.88 12.05 12.45 13.29 19.81 2.65 2.90 13.50 1.20 4.39 2.19 21 I3_SR2 SilentIntronRegion 0 3.66 3.24 1.97 6.44 6.97 6.49 5.21 3.29 5.96 2.28 4.18 13.12 19.22 7.96 8.40 9.39 5.26 2.94 2.68 4.28 1.24 5.38 3.86 22 I3_AR2 ActiveIntronRegion 0 6.27 2.53 3.92 7.76 5.54 5.34 7.41 3.45 7.73 0.41 6.77 32.23 24.94 7.47 4.20 8.33 3.67 2.85 1.52 6.96 1.05 8.43 6.30 23 E4_Aa NovelBoundary 1 15.78 8.95 11.44 3.46 28.61 5.05 24.64 1.89 12.82 1.10 12.27 20.26 43.50 17.66 13.35 17.09 7.76 4.60 13.84 5.88 5.56 7.23 3.76 24 ER4a ExonRegion 0 31.16 13.01 33.06 26.56 40.88 21.22 16.88 12.23 19.13 8.63 93.53 150.83 74.55 82.37 79.05 98.99 76.42 9.50 11.68 13.35 29.13 55.06 57.70 25 E4_Da NovelBoundary 1 0.00 6.71 0.00 10.72 0.00 2.27 8.17 9.45 10.97 1.07 6.63 49.82 12.99 4.71 8.90 6.92 0.00 8.46 3.67 2.75 0.00 3.12 0.00 26 E4a_E5a KnownJunction 0 36.75 15.06 36.28 37.06 44.74 28.96 22.57 8.42 28.67 12.44 125.03 102.03 60.39 104.07 94.69 88.27 60.59 4.77 7.81 6.33 20.20 55.11 59.67 27 I4 Intron 0 3.95 1.83 1.64 6.20 4.04 5.07 4.66 1.30 4.16 2.27 5.35 13.73 17.34 4.82 4.11 9.29 8.77 2.48 3.66 6.80 3.01 4.34 4.43 28 I4_AR1 ActiveIntronRegion 0 3.10 1.11 2.14 11.58 8.25 3.49 4.97 1.37 6.19 3.56 7.56 16.01 18.84 6.14 5.36 11.59 7.59 3.92 6.02 6.06 6.13 5.09 4.28 29 I4_SR1 SilentIntronRegion 0 4.14 1.98 1.54 5.09 3.16 5.41 4.60 1.28 3.75 2.01 4.89 13.28 17.06 4.55 3.85 8.82 9.04 2.18 3.17 6.97 2.36 4.19 4.47 30 E5_Aa NovelBoundary 1 6.59 0.00 7.86 13.82 8.40 0.00 11.08 7.11 5.61 1.56 5.00 40.21 47.24 5.06 0.00 18.46 18.23 3.90 4.71 8.05 2.97 3.12 7.77 31 ER5a ExonRegion 0 36.27 12.15 32.89 40.53 31.80 28.53 18.20 15.07 30.61 11.95 136.28 148.69 96.59 131.54 81.01 115.44 92.02 12.64 26.70 18.22 32.32 72.64 56.04 32 E5_Da NovelBoundary 1 3.41 0.00 0.00 5.03 0.00 2.78 10.29 0.00 0.00 0.00 2.47 20.41 43.50 0.00 8.90 0.00 0.00 0.00 0.00 0.00 0.00 7.59 6.91 33 E5a_E6a KnownJunction 0 80.53 23.61 28.38 35.33 31.58 36.34 30.96 17.21 30.09 12.87 153.04 135.79 132.30 142.62 145.74 97.07 73.21 4.44 30.87 26.72 33.79 67.91 65.73 34 ER6a ExonRegion 0 41.99 18.04 22.78 31.12 27.21 25.48 17.31 15.48 28.32 11.81 135.02 124.33 106.74 120.44 88.42 115.07 82.01 9.75 29.73 18.82 28.15 77.37 46.11 35 E6_Da NovelBoundary 0 12.59 0.00 5.50 9.52 14.77 10.90 14.97 4.27 9.26 4.16 10.11 21.01 32.63 17.31 15.20 15.98 9.35 0.00 13.27 9.59 16.74 9.37 0.00 36 E6a_E7a KnownJunction 0 51.79 19.08 31.61 17.08 8.32 21.18 15.37 23.21 22.86 9.75 148.93 114.19 62.01 101.36 80.47 110.14 83.12 1.87 36.42 18.47 11.06 68.21 23.73 37 I6 Intron 1 5.47 1.75 1.21 6.33 6.39 4.99 5.09 2.05 4.52 1.93 3.59 15.07 39.62 5.10 7.07 6.11 3.72 0.92 1.69 5.08 1.17 6.63 2.14 38 I6_SR1 SilentIntronRegion 1 4.10 1.05 1.88 6.03 7.25 6.63 6.67 1.00 4.53 2.42 2.99 19.84 51.89 6.19 6.24 6.14 3.41 0.83 1.23 3.85 1.14 7.26 1.90 39 I6_SR2 SilentIntronRegion 0 6.95 2.50 0.50 6.66 5.49 3.26 3.43 3.17 4.53 1.40 4.23 10.04 26.72 3.96 7.98 6.10 4.06 1.01 2.18 6.40 1.21 5.98 2.41 40 E7_Aa NovelBoundary 1 14.60 5.66 0.00 20.91 23.77 7.84 10.29 4.11 6.16 3.33 14.11 40.66 50.65 7.42 14.96 12.05 3.93 2.03 3.86 8.37 3.15 5.45 0.00 41 ER7a ExonRegion 0 39.85 25.26 21.89 15.20 27.12 20.77 16.17 13.99 16.82 7.79 124.97 117.40 103.27 104.13 95.63 97.68 70.40 4.19 40.98 17.18 19.24 56.42 41.23 42 E7_Da NovelBoundary 0 22.60 20.39 3.28 9.12 11.63 9.82 12.06 13.31 12.01 0.00 10.37 30.91 35.06 13.95 27.57 17.43 4.77 0.00 4.71 5.69 2.29 11.57 8.37 43 E7a_E8a KnownJunction 0 41.49 31.38 13.39 13.38 39.81 24.02 18.59 4.52 12.30 6.02 120.66 81.63 104.38 116.02 108.04 121.08 68.35 9.62 56.57 21.41 19.03 59.21 57.45 44 I7 Intron 1 25.68 7.01 4.65 11.87 21.04 23.76 10.81 8.29 10.06 5.63 9.12 34.85 57.97 20.33 20.74 12.91 7.91 1.10 2.39 6.53 2.14 11.24 5.50 45 I7_SR1 SilentIntronRegion 0 18.85 7.24 4.45 13.15 19.06 23.55 11.05 8.93 10.18 5.61 9.79 38.92 66.98 22.74 22.21 11.42 8.97 0.87 1.79 6.58 1.86 12.90 6.06 46 I7_AR2 ActiveIntronRegion 0 53.75 6.19 5.40 6.69 29.53 25.11 10.07 5.74 9.79 5.79 6.62 19.00 22.68 10.93 15.24 19.23 3.67 2.08 4.85 6.48 3.32 4.76 3.35 47 E8_Aa NovelBoundary 0 52.90 19.73 0.00 7.39 28.01 24.19 11.00 22.55 24.28 8.19 19.74 43.36 45.78 30.37 34.74 23.33 16.36 3.73 4.33 3.13 9.58 14.82 18.27 48 ER8a ExonRegion 0 101.41 36.40 37.15 32.15 44.68 40.39 21.36 32.00 38.63 13.30 148.37 140.59 145.81 108.30 127.41 119.57 103.46 17.18 35.26 29.44 31.43 81.19 54.30 49 E8_Da NovelBoundary 0 26.89 6.12 4.58 18.11 30.98 27.31 16.56 2.09 9.52 2.61 4.84 0.00 13.31 0.00 14.09 0.00 0.00 0.00 0.00 0.00 3.03 2.51 0.00 50 E8a_E9a KnownJunction 0 69.42 21.25 60.61 48.31 25.98 45.14 16.08 30.19 41.06 9.13 146.67 168.50 176.45 127.38 138.95 86.30 116.97 9.78 25.22 30.23 50.29 74.58 62.40 51 I8 Intron 0 17.75 3.93 0.53 7.24 6.45 3.36 4.47 3.97 3.19 2.14 1.86 3.49 18.38 1.86 3.65 2.87 0.95 1.77 1.84 2.26 0.21 2.01 1.98 52 I8_AR1 ActiveIntronRegion 0 30.39 3.05 0.78 7.40 10.32 3.93 4.54 4.42 4.73 2.20 2.49 5.40 26.25 3.03 4.06 5.73 1.41 3.92 2.05 1.36 0.47 2.23 2.52 53 ER9a ExonRegion 0 113.74 26.34 45.66 41.56 64.26 47.28 23.51 31.62 38.44 5.12 152.70 137.21 174.97 110.12 130.15 127.12 65.31 11.83 28.96 27.17 45.53 104.05 56.56 54 E9_Da NovelBoundary 0 6.96 2.83 22.03 11.49 18.08 2.38 10.55 4.60 6.54 0.00 2.68 25.21 8.28 10.07 13.72 10.68 9.07 2.28 0.00 6.26 0.00 0.00 0.00 55 E9a_E10a KnownJunction 1 171.73 31.90 49.23 45.18 49.66 47.13 16.65 37.87 30.58 2.93 174.68 117.64 146.42 81.17 151.93 196.62 67.41 12.60 32.94 20.52 51.89 124.92 80.50 56 E9a_E11a NovelJunction 0 72.24 14.21 28.00 33.16 12.56 30.44 3.36 12.86 15.39 24.04 6.58 0.00 13.64 34.96 28.43 6.75 7.48 18.20 12.42 12.08 8.22 16.47 11.78 57 I9 Intron 0 13.17 7.99 3.21 12.26 12.46 8.89 8.59 6.87 10.26 4.74 7.96 16.29 40.20 8.43 10.40 13.00 9.57 2.82 4.19 5.33 1.92 6.14 5.05 58 I9_SR1 SilentIntronRegion 1 8.71 1.61 3.31 2.37 0.14 9.23 6.47 2.58 7.68 0.10 1.93 19.10 35.50 7.42 3.94 6.73 6.71 1.19 6.61 1.86 1.00 0.11 0.00 59 I9_AR1 ActiveIntronRegion 0 9.60 3.97 3.26 6.13 9.58 6.99 7.35 1.82 6.25 3.96 5.59 9.01 33.52 7.15 5.73 10.35 8.57 0.92 2.50 4.20 1.27 2.14 6.11 60 I9_AR2 ActiveIntronRegion 1 9.48 6.31 1.74 6.50 13.61 8.61 4.24 3.68 6.16 6.80 4.79 8.53 42.35 18.08 8.70 14.00 5.41 5.01 3.65 1.51 1.31 4.26 0.00 61 I9_SR2 SilentIntronRegion 0 4.02 6.50 1.72 7.24 7.53 5.91 4.04 5.28 5.87 2.27 5.55 19.22 30.25 7.30 14.40 9.15 6.99 3.36 2.13 2.92 1.67 5.92 0.63 62 I9_AR3 ActiveIntronRegion 0 11.00 12.20 2.58 13.77 10.24 7.16 4.97 6.00 8.63 4.52 8.32 17.81 33.15 8.48 10.42 14.44 13.49 2.93 2.92 5.42 3.01 5.14 6.03 63 I9_SR3 SilentIntronRegion 0 7.72 5.46 2.17 8.17 8.40 6.71 10.07 4.33 7.35 4.71 6.47 13.73 33.33 7.32 7.21 8.18 6.45 3.35 2.71 4.67 1.48 4.26 4.33 64 I9_AR4 ActiveIntronRegion 0 23.10 10.23 5.43 26.07 16.57 10.45 11.67 13.76 19.61 6.75 11.66 20.34 59.55 9.39 15.41 10.15 10.65 2.82 6.54 7.47 0.00 11.90 8.09 65 I9_SR4 SilentIntronRegion 0 16.95 7.91 4.08 14.85 17.21 12.40 11.18 9.29 13.62 5.61 9.56 17.02 49.51 10.11 12.97 22.56 13.73 3.58 6.67 6.72 3.27 7.50 6.09 66 I9_AR5 ActiveIntronRegion 0 16.82 8.13 3.56 11.50 15.28 9.77 8.31 7.72 10.51 4.31 8.09 17.19 41.65 7.55 10.66 10.18 5.97 1.84 4.24 5.07 1.05 7.43 4.05 67 E10_Aa NovelBoundary 1 39.56 13.81 6.24 26.37 33.19 13.06 5.70 20.17 10.45 16.09 14.06 38.71 110.22 19.25 34.37 26.57 4.39 4.48 4.80 11.95 3.15 13.47 14.26 68 ER10a ExonRegion 0 101.76 31.66 42.48 53.29 49.91 31.35 27.15 32.39 26.04 16.95 123.54 151.57 175.13 108.91 141.23 115.95 75.86 7.58 32.87 17.57 34.00 83.76 45.46 69 E10_Da NovelBoundary 1 26.23 18.94 4.02 21.04 16.98 5.79 8.66 0.00 13.66 3.06 6.69 12.60 35.87 12.42 15.20 0.00 9.16 2.28 0.00 9.14 0.00 0.00 4.35 70 E10a_E11a KnownJunction 0 147.06 32.82 38.91 45.35 54.16 19.59 31.27 32.78 24.19 14.29 100.39 79.98 151.94 94.89 133.88 96.73 82.66 3.32 12.33 9.01 40.90 78.62 18.69 71 I10 Intron 0 9.43 4.14 4.00 8.32 7.35 6.63 6.17 2.62 5.15 2.70 3.69 6.60 19.05 3.62 7.43 7.72 3.95 1.50 5.19 4.44 1.01 2.23 3.59 72 I10_SR1 SilentIntronRegion 0 4.64 3.76 3.01 7.82 7.18 5.19 6.01 2.27 4.85 3.46 3.27 6.54 21.91 3.25 4.89 6.91 3.67 1.05 4.40 4.50 1.12 1.43 3.04 73 I10_SR2 SilentIntronRegion 0 20.92 5.25 2.60 5.86 5.44 6.98 6.07 4.34 5.65 2.32 4.35 5.08 13.80 4.18 11.37 10.10 4.03 2.49 9.33 4.83 1.08 3.11 3.19 74 I10_AR2 ActiveIntronRegion 0 14.35 6.08 6.63 10.53 7.37 6.85 5.69 3.59 7.99 1.28 3.11 7.39 21.61 4.39 16.54 5.16 4.95 1.84 2.72 3.86 1.87 4.17 4.40 75 E11_Aa NovelBoundary 1 65.72 0.00 18.66 25.57 52.21 20.95 23.10 14.50 12.33 14.05 9.27 0.00 40.26 0.00 13.35 8.03 4.77 2.53 8.19 6.07 0.00 5.57 8.02 76 ER11a ExonRegion 0 141.84 44.10 40.21 55.45 61.13 38.03 19.92 32.47 28.20 23.70 124.76 185.95 143.29 125.51 178.58 92.35 64.21 9.94 21.88 27.85 28.09 75.71 38.53 77 E11_Da NovelBoundary 1 5.85 12.23 5.03 11.19 11.63 2.90 5.39 4.97 10.39 3.36 7.32 37.21 42.85 0.00 4.45 0.00 8.79 0.00 0.00 6.14 0.00 0.00 0.00 78 E11a_E12a KnownJunction 1 103.80 22.76 41.36 54.07 30.22 27.82 20.23 38.90 34.58 25.04 83.92 183.81 146.58 105.30 203.60 71.26 47.97 8.08 3.95 26.72 8.15 70.85 34.23 79 I11 Intron 1 5.79 2.78 1.07 5.56 7.84 4.66 3.36 7.05 6.11 2.34 2.65 5.72 27.98 0.67 6.37 4.65 0.65 0.36 2.49 3.33 0.86 4.48 2.30 80 I11_AR1 ActiveIntronRegion 0 5.83 2.80 1.08 5.60 7.90 4.69 3.39 7.10 6.15 2.36 2.67 5.77 28.19 0.68 6.42 4.68 0.65 0.36 2.51 3.35 0.87 4.51 2.30 81 E12_Aa NovelBoundary 1 39.04 8.55 12.80 17.85 35.31 27.03 33.70 27.36 22.16 11.60 4.69 57.17 114.44 4.89 19.16 12.13 3.46 2.11 4.05 6.52 5.37 30.49 15.45 82 ER12a ExonRegion 0 54.46 9.79 13.80 15.35 10.87 8.97 7.72 12.94 8.68 6.08 22.83 54.84 36.16 22.42 48.82 23.30 13.97 2.36 1.91 5.03 3.90 18.96 7.37