Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC091045.1 Gene 0 7.36 2.12 2.58 2.86 3.47 2.09 2.47 3.87 4.22 3.30 4.65 7.06 7.34 5.72 8.83 5.14 6.15 1.36 2.25 1.89 1.05 1.89 3.34 2 501408 Transcript 0 2.39 0.83 0.85 1.08 1.30 0.99 1.08 1.31 1.48 1.10 1.61 2.50 3.05 2.23 3.01 1.87 2.21 0.56 1.47 0.86 0.61 0.75 1.60 3 ER1a ExonRegion 0 0.00 0.00 0.00 0.03 0.00 0.00 0.40 0.00 0.56 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 ER2a ExonRegion 0 0.00 0.92 0.00 0.90 1.23 2.48 1.79 0.17 0.03 0.02 0.87 1.61 5.35 2.43 1.03 1.34 1.67 0.85 5.81 1.92 1.99 1.03 3.98 6 E2_Da NovelBoundary 0 36.82 26.71 12.00 25.24 38.37 31.52 28.26 21.28 13.43 14.88 9.58 6.30 7.95 2.30 10.01 26.83 13.18 28.31 30.12 55.42 65.42 34.41 50.71 7 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 I2_AR2 ActiveIntronRegion 0 14.77 2.33 7.18 9.75 19.95 12.49 4.97 8.65 8.77 10.21 1.47 7.60 6.67 6.48 11.00 7.82 2.78 1.82 8.04 2.14 2.29 5.04 4.86 9 I2_AR3 ActiveIntronRegion 0 56.37 3.67 3.84 7.00 13.28 6.07 3.78 5.42 5.81 7.46 2.62 23.56 31.16 6.25 14.15 10.70 4.97 3.46 9.58 0.96 4.31 10.34 2.65 10 I2_AR4 ActiveIntronRegion 0 20.88 2.82 5.07 8.49 13.24 6.86 4.70 5.62 9.28 9.44 3.13 9.00 11.34 5.08 10.31 8.86 6.88 2.01 8.61 3.83 7.61 7.46 10.54 11 I2_SR4 SilentIntronRegion 0 12.16 2.82 8.22 10.29 13.43 8.23 6.21 8.27 9.34 6.74 3.35 17.32 18.33 4.97 11.22 11.14 6.41 1.77 7.61 2.88 2.63 9.97 6.64 12 I2 Intron 0 26.76 4.83 10.18 11.64 19.88 13.63 7.62 11.68 15.19 10.49 8.71 20.62 24.27 13.27 29.14 18.46 11.62 5.17 8.25 5.09 5.53 6.86 9.50 13 I2_AR1 ActiveIntronRegion 0 54.59 4.14 14.08 15.43 40.34 20.76 9.21 14.64 21.15 10.17 11.64 48.82 55.57 20.47 32.85 17.17 15.42 2.25 9.31 3.43 3.58 14.46 10.14 14 I2_SR2 SilentIntronRegion 0 20.26 2.58 6.04 7.14 14.99 13.49 5.09 6.89 11.01 7.05 4.91 10.99 15.62 8.00 18.97 11.91 5.67 3.47 5.76 4.00 4.72 6.01 6.72 15 I2_AR2 ActiveIntronRegion 0 25.44 4.58 14.66 15.02 17.08 9.93 5.22 11.97 19.39 14.94 13.16 18.20 12.95 13.10 25.28 31.04 17.69 15.71 10.86 7.15 14.39 10.74 15.23 16 I2_SR3 SilentIntronRegion 0 24.35 3.68 10.42 12.69 19.15 14.95 7.32 13.07 21.17 17.03 11.73 13.33 21.82 17.32 35.18 20.73 15.85 9.65 12.41 6.36 9.38 8.87 11.70 17 I2_AR3 ActiveIntronRegion 0 20.04 3.93 11.12 9.49 16.91 16.14 6.65 15.94 15.54 8.16 11.78 21.39 17.11 14.06 32.32 25.01 5.83 2.86 6.69 4.64 4.58 7.23 10.90 18 I2_SR4 SilentIntronRegion 0 43.34 8.92 12.06 14.65 22.80 27.13 10.38 21.92 20.88 14.34 12.48 12.10 15.46 15.61 46.62 25.74 12.08 10.41 7.17 3.72 14.12 4.59 13.68 19 I2_AR4 ActiveIntronRegion 0 22.31 5.23 8.81 11.34 16.69 15.22 9.18 14.46 19.23 11.69 12.03 16.96 13.28 14.39 35.13 21.42 12.90 5.51 10.39 6.02 5.65 8.91 12.76 20 I2_SR5 SilentIntronRegion 0 26.12 3.39 8.24 10.42 15.36 9.45 6.50 8.65 10.50 7.32 6.91 16.52 23.15 12.68 26.50 15.72 9.18 5.27 7.17 3.80 4.48 5.10 8.73 21 I2_AR5 ActiveIntronRegion 0 30.38 9.08 10.35 9.26 24.94 13.89 8.51 10.54 12.18 10.46 7.88 17.04 26.40 12.01 30.97 18.25 12.81 3.39 9.04 4.33 4.07 3.85 7.57 22 I2_SR6 SilentIntronRegion 0 10.28 9.88 4.43 3.52 10.19 5.09 11.94 6.26 5.11 7.12 3.35 8.92 10.72 6.00 15.45 12.37 8.02 0.64 5.53 5.17 1.53 2.17 3.06 23 I2_AR7 ActiveIntronRegion 0 29.40 8.32 17.38 15.03 22.68 16.18 12.03 14.04 24.16 15.48 7.00 8.62 22.63 12.29 39.46 20.53 23.97 3.27 7.10 8.18 13.14 5.81 8.39 24 I2_SR7 SilentIntronRegion 0 32.77 7.95 22.57 22.58 31.49 22.44 10.72 16.98 22.28 24.65 11.83 26.32 38.58 21.02 39.89 27.75 18.80 7.42 15.63 8.63 6.82 3.92 13.24 25 I2_AR8 ActiveIntronRegion 0 32.67 11.85 18.60 20.78 30.10 19.41 11.72 23.79 22.91 17.72 11.52 51.97 45.87 14.52 32.25 29.44 15.03 6.28 10.02 9.02 4.90 5.90 8.81 26 I2_SR8 SilentIntronRegion 0 9.64 3.09 3.17 7.26 14.81 9.75 5.46 7.27 7.59 6.29 5.24 13.95 14.34 9.17 29.99 10.64 8.60 2.19 4.15 4.84 1.20 3.39 7.97 27 E3_Aa NovelBoundary 0 33.64 5.46 8.25 18.21 36.42 18.85 3.97 14.70 20.72 4.89 2.47 45.61 0.00 4.71 30.53 46.06 12.53 5.02 8.47 5.69 2.78 5.88 20.74 28 ER3a ExonRegion 0 7.42 3.90 3.70 5.45 4.83 1.91 2.76 6.62 6.85 5.24 3.81 7.52 6.26 6.75 9.85 7.49 6.13 2.31 2.44 2.21 1.93 2.17 4.02 29 E3_Da NovelBoundary 0 153.58 33.61 122.59 74.82 92.19 66.04 64.52 65.64 60.68 65.78 156.67 172.11 166.71 295.25 431.05 257.80 198.88 46.55 91.96 70.31 46.15 72.99 93.13 30 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 Ix Intron 0 23.14 3.31 4.35 7.25 17.31 8.06 11.28 9.31 7.96 6.95 7.40 40.25 57.59 9.10 24.20 17.33 15.90 1.63 6.32 4.02 2.70 6.05 9.36 32 Ix_AR1 ActiveIntronRegion 0 11.21 2.60 3.09 4.95 9.07 6.72 5.71 9.29 5.29 2.56 6.51 12.23 31.98 7.56 27.18 20.80 18.21 0.94 5.74 4.12 5.04 3.73 13.17 33 Ix_SR1 SilentIntronRegion 0 14.74 2.61 2.52 6.49 14.34 8.88 6.80 7.22 7.31 4.36 7.36 31.97 42.21 9.06 20.03 12.90 15.09 0.69 2.52 2.63 1.85 4.56 7.64 34 Ix_AR2 ActiveIntronRegion 0 32.04 4.26 6.44 9.56 23.05 10.35 15.42 12.31 9.42 10.06 6.51 44.66 68.94 9.66 25.71 22.68 18.75 2.61 9.05 5.42 4.08 5.48 13.77 35 Ix_SR2 SilentIntronRegion 0 22.18 2.97 3.85 6.35 15.90 6.53 11.20 8.04 7.92 6.43 9.11 47.78 63.50 8.89 24.99 14.84 14.72 0.87 5.80 3.53 1.38 8.14 5.35 36 Ix_AR3 ActiveIntronRegion 0 8.81 2.12 0.00 3.17 8.33 2.86 3.44 2.68 3.83 2.67 2.01 20.81 14.07 9.65 13.20 3.09 1.72 4.32 1.66 1.11 1.15 2.17 6.11 37 E4_Aa NovelBoundary 0 9.85 0.00 4.94 4.06 3.57 0.00 3.84 2.55 6.02 0.00 9.69 6.30 27.11 9.54 43.39 3.42 8.23 0.00 4.80 5.56 0.00 5.39 3.67 38 ER4a ExonRegion 0 9.31 1.00 2.26 1.20 3.05 2.54 2.61 2.42 2.90 2.45 6.58 8.39 9.72 6.00 10.20 4.26 7.67 0.77 2.05 1.89 0.33 2.05 3.20