Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC012652.5 Gene 0 11.58 12.18 7.54 11.74 9.94 4.92 29.79 5.58 2.47 12.70 13.37 20.81 20.45 16.91 23.42 19.64 32.73 22.86 3.95 23.94 1.14 4.51 2.73 2 391614 Transcript 1 494.76 469.91 2859.56 2926.82 346.76 348.18 625.99 3180.49 2874.07 2797.60 205.26 66.58 60.17 58.77 174.69 448.83 427.79 3040.96 331.61 630.08 376.18 236.75 456.99 3 ER1a ExonRegion 0 12.08 13.20 7.87 13.62 10.86 4.89 34.04 6.78 2.57 13.63 16.42 19.85 21.42 16.37 24.03 21.19 38.95 26.81 4.45 26.97 0.00 3.39 1.86 4 E1_Da NovelBoundary 0 20.30 28.22 9.40 14.65 0.00 14.37 51.41 9.82 3.12 9.86 11.85 12.00 5.84 19.78 31.77 43.07 21.13 47.17 12.42 29.47 0.00 2.39 4.35 5 E1a_E2a KnownJunction 0 0.00 0.00 1.69 0.00 0.00 5.79 0.00 0.00 1.62 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.32 0.00 0.00 2.53 0.00 0.00 6 E2_Aa NovelBoundary 0 27.41 14.41 23.65 17.71 26.57 32.88 38.11 37.21 18.92 15.98 10.84 32.11 6.49 11.89 16.56 28.28 53.48 55.30 34.54 21.54 10.56 5.82 23.30 7 ER2a ExonRegion 1 7.98 8.30 7.02 4.06 7.36 4.55 12.30 0.65 2.03 9.82 0.08 17.86 18.56 19.90 18.01 14.18 7.22 7.01 1.99 12.19 5.14 9.29 6.30 8 E2_Da NovelBoundary 0 0.00 0.00 2.63 1.93 0.00 0.00 21.11 5.09 0.00 3.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.44 0.00 6.52 0.00 0.00 0.00 9 E2a_E3a KnownJunction 1 2442.80 2320.97 14276.11 14613.46 1711.21 1720.03 3073.59 15895.00 14362.09 13956.07 1009.78 262.44 247.22 239.04 807.72 2197.37 2089.01 15164.64 1650.12 3102.09 1866.05 1161.54 2270.06 10 Ix_AR6 ActiveIntronRegion 0 33.54 13.06 20.41 65.16 25.32 22.57 23.32 29.52 27.79 40.14 5.65 22.15 28.86 11.74 15.29 19.78 20.69 24.59 6.37 27.74 5.68 3.45 7.91 11 Ix_AR5 ActiveIntronRegion 0 19.75 8.47 23.28 75.41 26.31 14.67 19.86 32.84 31.08 43.58 2.90 25.98 33.61 8.12 12.57 17.83 14.85 25.25 6.37 27.30 4.41 2.08 11.75 12 Ix_AR4 ActiveIntronRegion 0 18.19 13.15 21.40 77.83 27.33 11.24 21.92 34.05 30.17 34.87 3.78 37.31 32.13 11.75 17.90 17.01 12.22 17.97 4.68 25.21 1.45 4.88 10.87 13 Ix_AR3 ActiveIntronRegion 0 22.36 34.93 28.68 84.95 32.50 19.54 41.35 21.34 22.66 32.17 4.65 18.17 25.16 4.16 12.12 16.78 16.40 14.13 1.29 32.67 3.93 8.38 0.80 14 Ix_AR2 ActiveIntronRegion 0 30.88 46.29 21.48 61.01 14.01 14.35 43.15 24.10 14.17 30.56 1.25 14.26 14.62 5.54 6.49 12.94 18.83 12.72 0.00 27.66 2.98 4.17 4.15 15 Ix_AR1 ActiveIntronRegion 0 28.91 17.14 16.48 65.42 20.69 14.46 30.21 20.92 14.90 23.29 6.88 14.29 26.82 5.13 7.10 15.85 14.92 10.59 5.19 24.40 2.26 6.34 3.20 16 Ix Intron 0 14.96 24.12 10.96 28.12 14.51 6.53 17.50 7.54 7.97 9.56 3.32 10.45 18.32 8.87 12.65 11.29 9.99 11.41 5.47 13.13 2.24 1.21 1.71 17 Ix_SR2 SilentIntronRegion 0 15.51 24.72 11.26 28.57 14.29 6.63 17.56 7.65 8.17 9.66 3.24 9.75 16.68 8.95 12.64 11.35 10.40 11.91 5.59 13.12 2.22 1.24 1.74 18 Ix_SR1 SilentIntronRegion 0 7.09 16.25 6.76 22.86 19.33 5.39 17.37 6.25 5.34 8.70 4.77 22.73 45.61 8.28 14.07 11.12 4.21 4.31 4.06 14.27 2.81 0.78 1.25 19 Ix_AR1 ActiveIntronRegion 0 1.41 2.03 2.72 5.91 0.00 0.82 8.09 4.23 1.78 0.00 2.36 4.33 20.32 0.54 0.00 2.97 0.00 0.00 0.00 2.36 0.00 1.39 0.00 20 Ix Intron 0 10.12 15.06 7.61 30.71 14.86 12.31 18.80 6.56 8.24 10.68 6.71 11.75 17.14 12.32 17.95 21.79 17.32 19.63 10.81 16.58 2.55 2.09 1.81 21 Ix_SR1 SilentIntronRegion 0 10.17 15.13 7.64 30.85 14.93 12.37 18.88 6.59 8.27 10.73 6.74 11.80 17.21 12.38 18.03 21.88 17.40 19.72 10.86 16.66 2.56 2.10 1.82 22 Ix Intron 0 170.12 315.69 174.89 416.93 255.89 249.28 252.11 166.22 111.24 188.32 129.51 298.19 323.72 143.92 150.45 118.24 141.63 71.64 87.62 140.41 48.90 184.78 103.21 23 Ix_SR3 SilentIntronRegion 0 7.02 16.47 9.99 18.66 12.07 5.75 22.57 12.04 5.25 17.39 6.62 19.50 14.79 13.29 13.30 13.99 11.96 19.05 13.21 23.97 0.68 1.02 2.60 24 Ix_AR8 ActiveIntronRegion 0 213.01 394.80 217.80 524.63 318.75 312.43 310.90 207.10 139.98 234.64 161.71 369.30 402.41 175.34 184.27 144.59 175.30 85.26 106.13 170.59 61.64 232.38 127.22 25 Ix_AR2 ActiveIntronRegion 0 15.87 16.27 18.26 23.99 18.20 25.67 27.80 12.79 11.36 6.54 17.78 58.01 30.49 37.35 46.13 23.48 23.77 13.49 20.07 13.40 9.26 19.59 39.06 26 Ix_AR1 ActiveIntronRegion 0 64.17 114.48 76.68 103.25 121.98 107.95 133.38 60.20 25.96 52.63 51.83 157.38 171.65 113.80 102.61 70.53 65.42 42.20 59.13 74.14 16.27 78.78 82.63 27 Ix Intron 0 21.42 18.89 11.74 30.66 24.15 13.01 28.25 12.72 9.26 11.15 8.89 16.34 37.19 9.94 18.91 16.42 10.99 11.84 10.00 25.12 3.38 4.89 6.22 28 Ix_AR5 ActiveIntronRegion 0 28.08 24.58 15.07 50.88 28.79 17.29 35.71 17.46 16.28 24.17 13.68 17.61 43.06 8.74 13.13 18.84 11.19 17.08 13.62 45.79 4.55 7.37 11.25 29 Ix_SR4 SilentIntronRegion 0 20.69 16.86 12.63 29.49 29.99 14.68 26.26 9.72 10.00 9.19 4.64 9.55 27.15 5.28 15.86 14.78 8.12 14.87 11.84 21.41 4.16 2.74 7.56 30 Ix_SR3 SilentIntronRegion 0 22.78 20.78 12.38 36.00 18.87 9.78 25.26 11.65 7.16 8.81 8.04 19.37 58.26 6.15 18.09 13.71 10.44 9.98 10.66 25.40 2.19 5.84 5.31 31 Ix_AR3 ActiveIntronRegion 0 16.35 9.43 0.00 0.00 20.68 9.92 14.34 0.00 0.00 0.00 16.43 12.99 17.91 14.32 37.72 25.26 20.41 2.86 14.77 9.86 1.70 6.44 0.00 32 Ix_AR1 ActiveIntronRegion 0 38.53 30.42 21.71 47.59 33.77 13.21 50.36 36.21 13.60 18.48 25.78 45.57 74.74 36.72 46.81 32.67 28.55 13.09 9.76 38.35 2.38 7.13 4.23 33 E3_Aa NovelBoundary 1 706.94 474.78 1119.92 1236.41 422.92 323.85 768.65 1308.33 1009.77 980.17 226.06 54.47 76.62 55.21 155.63 535.93 464.80 1246.09 429.38 607.66 355.78 112.61 461.39 34 ER3a ExonRegion 1 10.92 7.07 5.12 2.94 4.38 5.67 10.02 0.00 2.05 7.38 0.00 32.77 13.64 18.57 23.67 11.42 3.75 4.03 1.52 9.14 7.16 9.52 6.74