Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ARHGAP11B Gene 0 14.70 22.35 21.98 13.34 22.32 11.40 63.95 22.45 8.87 27.40 75.79 79.07 48.50 86.81 43.75 72.15 82.69 62.48 18.38 60.05 4.62 4.84 5.35 2 341721 Transcript 0 28.52 24.85 24.52 15.82 31.46 11.24 76.71 19.57 7.11 21.21 70.02 112.20 47.67 104.49 43.03 87.16 77.89 40.09 9.79 54.02 3.82 7.32 6.93 3 428041 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 IG29 Intergenic 0 3.04 1.22 0.22 0.97 2.88 3.07 9.35 0.62 1.10 1.23 8.79 1.22 4.56 9.01 3.82 11.39 5.93 4.18 4.19 5.60 1.85 1.00 2.11 5 IG29_AR1 ActiveIntergenicRegion 0 3.05 1.22 0.22 0.98 2.90 3.09 9.40 0.62 1.10 1.23 8.83 1.23 4.58 9.06 3.84 11.44 5.96 4.20 4.21 5.63 1.86 1.00 2.12 6 ER1a ExonRegion 0 7.02 7.44 22.86 7.74 10.01 9.88 26.94 25.15 4.10 28.41 63.36 26.78 23.55 83.16 42.85 64.23 58.33 83.24 17.47 63.26 3.57 2.45 5.72 7 E1_Ab KnownBoundary 0 8.82 16.71 26.99 30.87 4.16 16.30 45.66 59.39 23.61 117.90 169.83 93.03 53.89 245.69 114.10 178.50 131.65 347.88 108.43 196.10 23.54 31.72 19.55 8 ER1b ExonRegion 0 10.85 14.52 13.05 5.74 8.50 7.40 29.31 18.16 5.00 23.69 52.75 19.68 13.88 56.58 29.98 57.07 77.14 67.32 16.37 43.58 6.52 3.23 4.49 9 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER2a ExonRegion 0 9.66 16.15 10.18 7.54 3.99 6.41 29.65 13.83 6.65 22.57 46.42 9.45 10.17 43.37 21.82 39.52 50.30 46.64 10.81 23.70 6.21 3.99 3.39 11 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER3a ExonRegion 0 9.14 16.92 21.74 15.96 26.34 17.13 89.52 21.67 10.80 34.58 65.00 76.28 73.83 114.24 53.57 84.69 103.28 93.80 23.94 77.98 3.91 2.94 8.20 13 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER4a ExonRegion 0 13.94 23.35 22.14 16.86 19.00 9.90 70.75 21.83 17.19 33.42 87.46 90.02 60.42 78.57 45.11 64.60 108.93 66.16 24.35 61.97 4.20 3.86 3.62 15 E4a_E5a KnownJunction 0 17.93 25.65 43.40 22.47 47.62 13.06 123.21 27.72 22.02 34.92 128.66 137.14 101.78 95.77 64.90 49.05 113.42 58.99 31.72 87.12 0.00 8.76 4.27 16 ER5a ExonRegion 0 22.29 37.35 43.71 25.32 78.16 21.77 134.95 40.10 20.65 48.65 164.92 202.69 145.00 140.00 85.17 107.35 153.42 75.86 46.03 117.39 3.64 8.33 6.17 17 E5_Da NovelBoundary 0 43.93 78.34 67.06 84.44 55.26 106.87 335.77 56.39 28.36 158.38 354.46 332.96 235.37 157.40 117.07 225.41 348.11 195.49 134.59 304.69 5.99 68.52 32.61 18 E5a_E6a KnownJunction 1 7.26 43.68 45.83 22.84 43.55 8.35 91.37 27.23 12.41 35.97 111.77 191.31 52.11 97.30 33.13 83.82 93.69 56.09 61.37 81.75 5.44 12.00 0.00 19 I5_AR1 ActiveIntronRegion 0 1.11 0.53 2.88 0.00 1.41 0.48 3.83 1.35 0.48 4.94 15.75 8.50 8.34 6.73 0.54 2.34 6.94 0.49 0.00 6.15 0.00 0.00 0.00 20 I5_SR1 SilentIntronRegion 1 0.00 1.26 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 29.30 2.40 4.75 2.55 3.70 2.05 0.00 0.00 2.65 0.00 0.00 0.00 21 E6_Aa NovelBoundary 0 11.34 5.99 6.56 3.16 31.07 5.79 54.59 13.97 4.75 7.60 45.17 93.78 73.70 43.15 56.25 31.10 56.19 11.44 0.00 24.29 0.00 10.53 8.19 22 ER6a ExonRegion 0 18.98 44.72 27.09 20.81 39.74 8.82 102.44 26.95 11.24 39.26 129.02 151.88 69.49 97.92 47.76 93.21 94.69 58.47 22.58 69.69 6.45 6.60 5.05 23 E6_Da NovelBoundary 0 3.70 2.76 3.64 3.43 3.48 0.00 35.15 0.00 0.00 6.12 7.16 0.00 19.64 2.47 0.00 7.52 33.47 0.00 0.00 9.78 0.00 0.00 0.00 24 E6a_E7a KnownJunction 0 55.12 79.26 25.43 19.74 76.15 16.69 173.34 34.87 16.12 39.70 207.47 258.53 131.65 177.23 96.55 144.92 110.61 72.09 21.65 105.02 11.06 5.94 20.40 25 E7_Aa NovelBoundary 0 11.04 0.00 4.49 0.00 3.90 0.00 33.61 0.00 1.30 10.07 2.32 19.21 8.12 0.00 4.45 3.76 8.98 2.07 0.00 12.59 0.00 2.88 0.00 26 ER7a ExonRegion 0 27.51 50.84 20.06 17.83 44.60 11.49 139.63 21.58 10.91 41.04 117.26 221.02 87.08 117.64 70.02 115.57 84.56 45.18 18.16 76.70 3.67 13.96 7.05 27 E7_Da NovelBoundary 1 64.01 102.35 55.11 42.15 98.64 88.19 319.91 60.17 32.26 165.04 247.85 409.48 170.44 261.88 57.11 204.13 253.39 113.54 79.53 198.59 2.84 43.54 24.67 28 E7b_E8a KnownJunction 1 50.53 20.59 22.91 17.38 35.48 8.29 116.15 16.22 3.15 22.24 34.59 158.00 85.71 74.40 39.06 78.44 37.68 30.39 7.34 48.83 0.00 9.67 8.11 29 ER7b ExonRegion 1 33.72 29.69 19.52 15.08 36.57 6.85 106.53 14.98 3.79 31.12 44.20 205.51 93.80 99.94 37.72 91.54 63.82 22.79 9.13 62.55 2.94 9.72 6.85 30 I7 Intron 0 2.39 5.75 5.29 5.31 7.18 1.55 33.48 5.28 0.52 4.59 4.64 18.31 16.90 3.89 5.40 9.45 18.19 13.98 1.35 17.28 0.31 1.62 0.41 31 I7_SR1 SilentIntronRegion 0 2.40 5.76 5.30 5.32 7.20 1.56 33.58 5.29 0.52 4.60 4.66 18.36 16.94 3.90 5.42 9.47 18.24 14.02 1.35 17.33 0.31 1.62 0.42 32 E8_Aa NovelBoundary 0 6.59 24.54 0.00 0.00 0.00 5.56 65.67 6.24 1.71 4.54 2.68 6.30 26.95 4.89 0.00 4.36 9.35 4.31 0.00 6.46 0.00 0.00 0.00 33 ER8a ExonRegion 1 38.16 41.75 31.69 24.30 46.95 8.28 132.85 24.55 6.79 29.82 93.62 186.78 88.08 159.60 65.69 167.41 140.75 51.07 17.52 74.40 10.36 14.45 16.61 34 E8a_E9a KnownJunction 1 59.64 32.49 51.77 31.96 80.73 8.69 110.10 46.00 16.81 40.21 151.25 182.61 33.11 209.55 68.85 202.17 162.88 63.26 12.33 115.43 5.93 15.86 20.91 35 I8 Intron 0 1.02 2.78 0.74 2.55 3.07 1.02 16.50 2.19 0.48 2.47 1.50 6.03 9.74 2.02 3.67 3.41 6.71 4.25 0.47 6.45 0.00 0.23 0.65 36 I8_AR1 ActiveIntronRegion 0 1.35 3.24 1.17 3.13 5.85 1.47 19.98 1.90 0.29 4.28 1.34 6.31 10.70 2.23 4.49 3.33 5.16 5.08 0.51 6.33 0.00 0.67 0.41 37 E9_Aa NovelBoundary 1 13.78 0.00 20.02 23.61 12.39 15.96 74.19 18.32 14.24 13.75 7.74 6.00 46.59 24.84 10.63 0.00 18.79 18.70 3.58 21.41 3.15 12.25 11.52 38 ER9a ExonRegion 0 40.91 60.78 44.54 30.47 46.28 28.75 142.40 42.59 17.92 26.54 130.59 188.93 95.06 189.33 75.32 135.25 148.79 86.75 21.18 99.18 8.39 13.18 11.10 39 E9_Da NovelBoundary 0 0.00 9.01 24.75 24.37 24.36 17.66 116.28 12.57 11.11 20.20 14.79 19.21 34.09 50.39 20.27 15.81 27.96 24.25 0.00 39.76 3.09 17.33 12.46 40 E9a_E10a KnownJunction 1 38.23 35.91 32.73 21.04 34.63 26.46 77.42 16.63 12.24 20.50 112.77 102.18 20.45 131.26 46.73 70.84 98.27 42.66 4.80 38.35 3.15 5.69 0.00 41 I9 Intron 0 3.88 7.81 4.60 3.72 5.22 2.73 24.43 4.28 0.95 5.39 7.86 9.94 11.71 14.28 8.46 13.80 17.97 11.75 2.92 18.65 0.38 1.67 0.50 42 I9_AR1 ActiveIntronRegion 0 2.92 8.41 5.39 3.20 4.20 1.81 15.89 1.51 0.72 5.05 4.95 9.73 8.85 13.66 6.96 17.56 18.82 14.67 2.51 19.67 0.87 0.41 1.16 43 I9_SR1 SilentIntronRegion 0 4.29 7.58 4.29 3.95 5.65 3.12 28.02 5.43 1.04 5.54 9.09 10.06 12.93 14.58 9.11 12.29 17.66 10.58 3.10 18.29 0.18 2.20 0.24 44 E10_Aa NovelBoundary 0 0.00 0.00 3.13 1.73 0.00 2.61 11.61 0.00 1.74 1.56 2.68 19.96 22.08 2.41 6.30 7.35 0.00 0.00 0.00 2.68 0.00 0.00 4.27 45 ER10a ExonRegion 0 14.37 16.83 15.72 5.54 20.50 10.22 33.32 6.40 4.78 7.56 66.54 61.44 19.56 92.06 49.07 52.99 54.64 19.03 5.42 26.35 3.38 2.22 0.00 46 E10_Da NovelBoundary 1 16.67 52.49 9.67 2.00 23.01 0.00 45.31 11.50 9.40 9.37 18.16 51.17 20.45 74.93 27.20 35.20 34.60 12.48 4.80 14.96 3.03 8.39 0.00 47 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48 I10 Intron 0 5.47 10.26 5.81 5.31 7.81 2.92 31.61 6.07 1.57 6.42 7.77 23.30 18.16 11.93 11.55 20.65 21.86 16.27 3.81 18.39 0.58 1.00 1.46 49 I10_SR1 SilentIntronRegion 0 9.46 11.76 2.88 0.00 8.44 2.89 32.37 2.03 0.48 3.15 4.57 33.61 19.15 24.74 17.09 20.31 13.02 5.09 0.84 10.63 0.00 3.29 0.77 50 I10_AR1 ActiveIntronRegion 0 15.14 13.12 13.99 8.09 18.07 7.58 41.46 11.32 2.32 15.20 21.66 60.68 30.82 42.37 30.74 37.74 34.33 16.83 5.66 25.21 0.78 2.52 1.48 51 I10_SR2 SilentIntronRegion 0 3.58 5.55 3.08 3.43 6.43 1.79 26.45 5.98 1.32 5.73 7.61 24.88 17.52 9.95 13.11 23.56 25.02 17.25 5.13 17.96 0.29 1.22 1.91 52 I10_AR2 ActiveIntronRegion 0 6.06 10.90 4.93 7.10 7.96 2.68 44.69 7.07 1.81 5.70 9.34 27.63 36.17 6.93 7.68 22.12 15.23 9.21 4.01 13.69 0.25 0.95 0.50 53 I10_SR3 SilentIntronRegion 0 3.97 4.77 4.35 4.44 4.25 1.93 24.55 5.31 1.01 4.49 6.76 14.90 11.94 7.16 8.56 19.66 21.81 17.22 2.14 15.91 0.69 0.59 0.89 54 I10_AR3 ActiveIntronRegion 0 4.57 9.62 4.90 3.29 5.98 4.61 46.26 5.81 0.79 8.94 5.28 33.92 20.80 9.38 13.85 15.75 19.97 16.86 3.97 23.19 0.00 1.00 1.22 55 I10_AR4 ActiveIntronRegion 1 5.18 8.53 8.54 2.28 6.03 0.96 28.02 1.44 1.09 5.84 2.16 31.66 16.52 5.11 3.90 11.89 16.21 8.47 2.42 11.02 0.00 0.00 0.00 56 I10_SR4 SilentIntronRegion 0 1.67 5.78 5.37 1.68 5.60 2.73 24.52 4.36 0.85 3.66 4.50 24.63 25.34 13.89 9.25 13.14 28.78 10.12 4.96 20.99 2.63 0.62 2.90 57 I10_AR5 ActiveIntronRegion 0 5.80 10.68 2.95 2.59 5.21 2.99 33.53 4.01 1.27 5.47 21.62 13.63 25.94 22.94 20.26 27.03 27.67 18.29 13.49 33.89 0.88 0.00 0.80 58 I10_SR5 SilentIntronRegion 0 2.64 10.33 3.48 4.08 4.61 3.08 30.86 5.29 1.41 5.37 6.42 16.30 16.66 7.95 8.42 20.88 24.52 18.29 3.87 21.34 0.65 0.46 2.58 59 I10_AR6 ActiveIntronRegion 0 1.23 7.34 3.08 2.16 4.62 1.33 32.87 2.87 2.12 5.93 7.15 9.67 14.79 11.26 11.76 18.57 34.25 32.45 6.09 15.54 0.65 0.61 1.78 60 I10_SR6 SilentIntronRegion 0 5.67 14.81 6.72 7.00 9.64 2.48 32.11 6.11 1.98 6.04 5.03 19.90 16.61 8.29 8.77 16.43 16.28 14.62 3.65 17.30 0.52 0.99 1.44 61 I10 Intron 0 3.81 7.99 3.41 6.22 6.76 2.56 25.47 5.75 1.90 5.60 5.94 12.87 12.43 7.52 6.89 17.39 16.84 20.51 4.60 17.78 1.05 0.32 1.90 62 I10_SR1 SilentIntronRegion 0 5.89 15.68 1.83 7.26 10.82 2.33 21.62 6.95 1.09 5.06 5.34 14.84 14.50 6.85 12.07 24.26 12.67 30.32 4.57 17.67 0.32 0.50 0.92 63 I10_AR1 ActiveIntronRegion 0 8.50 25.49 5.88 15.96 21.68 7.22 57.86 19.17 2.80 7.05 9.16 23.24 29.11 10.63 16.87 24.77 26.50 28.40 12.48 34.05 1.54 1.26 1.57 64 I10_SR2 SilentIntronRegion 0 3.24 5.89 3.33 5.31 5.17 2.18 23.05 4.52 1.89 5.52 5.71 11.83 10.85 7.32 5.63 16.20 16.37 19.05 3.93 16.41 1.06 0.22 2.00 65 ER11a ExonRegion 1 2.63 2.99 3.44 4.63 3.43 4.96 21.34 3.19 1.53 5.67 3.28 9.73 17.39 3.37 4.99 8.77 13.75 1.73 2.67 11.88 0.46 0.00 0.00