Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CHRFAM7A Gene 0 3.55 6.17 31.29 23.86 7.88 24.33 18.62 20.95 9.38 35.32 4.62 2.00 6.89 8.33 0.80 0.00 0.00 34.72 2.44 24.96 0.27 0.74 1.57 2 299847 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 397827 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 401522 Transcript 0 2.12 0.00 11.95 19.08 9.37 18.34 11.92 8.64 8.95 8.03 3.87 0.00 5.86 12.18 0.73 0.00 0.00 13.40 0.80 9.57 0.00 0.00 1.47 5 ER1a ExonRegion 0 3.32 6.28 11.67 10.85 8.96 37.13 28.86 15.38 9.32 12.94 11.54 3.92 6.74 16.80 1.53 0.00 0.00 14.85 1.19 24.20 1.28 1.04 2.89 6 E1a_E2a KnownJunction 0 6.52 29.67 41.75 43.18 4.16 79.39 38.60 38.28 25.90 35.00 22.53 18.76 27.27 28.25 0.00 0.00 0.00 55.59 0.00 63.98 7.72 0.00 0.00 7 ER2a ExonRegion 0 9.11 27.85 76.25 99.47 45.55 124.11 107.03 96.17 46.42 65.32 22.44 19.15 40.22 41.60 6.31 0.00 0.00 76.90 1.89 106.13 1.53 6.80 6.67 8 E2_Da NovelBoundary 0 7.56 0.00 15.58 28.70 0.00 16.30 15.50 20.00 8.33 1.67 0.00 0.00 0.00 0.00 0.00 4.36 0.00 15.88 0.00 24.16 0.00 0.00 7.77 9 E2a_E3a KnownJunction 0 9.33 3.35 69.36 83.51 42.19 76.21 108.86 71.55 40.60 61.78 40.80 53.12 40.74 79.82 15.20 0.00 0.00 52.11 8.47 89.61 5.68 12.49 7.68 10 E2a_E4a NovelJunction 0 3.41 6.18 27.38 13.29 8.15 27.31 31.05 24.36 7.44 27.75 2.05 6.15 34.25 9.54 0.00 0.00 0.00 36.02 0.00 46.28 0.00 4.90 0.00 11 ER3a ExonRegion 0 7.11 3.02 76.45 72.42 42.44 83.21 88.15 78.24 41.57 49.69 20.36 15.76 73.50 38.78 7.12 0.00 0.00 28.26 1.39 88.56 1.03 4.66 5.46 12 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 ER4a ExonRegion 0 7.70 1.60 57.62 65.33 28.41 39.91 49.10 48.43 36.00 38.75 15.34 3.41 30.83 32.59 2.16 0.00 0.00 41.48 1.42 36.49 0.00 2.70 5.25 14 E4a_E5b KnownJunction 0 6.89 0.00 52.33 79.98 60.78 52.92 49.82 40.54 34.58 34.71 12.74 0.00 26.78 49.56 0.00 0.00 0.00 58.70 4.80 32.79 0.00 0.00 4.35 15 E5_Aa NovelBoundary 0 6.96 11.18 36.46 39.26 4.24 2.38 8.39 10.47 18.29 8.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38.22 3.48 13.74 0.00 0.00 0.00 16 ER5a ExonRegion 0 2.12 0.00 11.95 19.08 9.37 18.34 11.92 8.64 8.95 8.03 3.87 0.00 5.86 12.18 0.73 0.00 0.00 13.40 0.80 9.57 0.00 0.00 1.47 17 ER5b ExonRegion 0 3.00 0.00 32.25 56.79 12.80 47.79 14.48 27.63 27.20 23.33 6.09 0.00 8.13 16.20 0.00 0.00 0.00 38.97 1.21 25.94 0.00 2.69 0.97 18 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 I5_AR2 ActiveIntronRegion 0 1.66 12.28 36.15 80.02 41.63 50.15 13.23 41.40 14.13 63.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31.55 4.50 49.13 0.00 0.33 0.00 20 ER6a ExonRegion 0 4.50 0.39 13.84 19.82 4.36 20.15 11.94 14.29 8.65 19.58 2.92 1.08 14.85 8.68 0.62 0.00 0.00 24.76 1.92 9.69 0.00 0.00 1.78 21 E6_Da NovelBoundary 0 3.56 29.86 112.44 145.70 108.91 171.04 29.28 84.37 17.39 139.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48.87 0.00 128.35 0.00 0.00 4.01 22 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 ER7a ExonRegion 0 1.61 1.26 44.86 32.56 6.04 27.85 15.09 24.08 2.67 58.39 2.63 0.00 3.27 2.71 0.00 0.00 0.00 69.04 6.11 43.28 0.00 0.00 2.30 24 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 I7_SR2 SilentIntronRegion 0 1.75 2.36 9.98 33.30 9.31 10.93 7.02 12.81 4.88 24.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.11 0.00 12.68 0.00 0.00 0.00 26 ER8a ExonRegion 0 0.12 0.00 65.93 29.81 0.00 0.00 0.00 21.64 7.37 71.20 2.04 2.09 0.00 2.17 0.00 0.00 0.00 26.65 1.24 30.57 0.00 0.00 1.72 27 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 I8_SR1 SilentIntronRegion 0 1.17 4.20 12.56 37.79 8.76 23.84 11.36 27.59 12.67 34.87 0.27 0.00 0.00 0.00 0.00 0.00 0.00 23.92 5.27 27.72 0.00 0.00 0.00 29 ER9a ExonRegion 0 3.93 5.66 164.82 124.51 6.20 72.15 23.33 83.94 11.62 158.37 3.32 1.65 0.00 8.86 0.00 0.00 0.00 116.24 5.91 130.91 0.00 0.00 1.36 30 E9a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 I9_SR2 SilentIntronRegion 0 0.00 0.70 13.02 1.55 1.83 0.63 0.91 6.71 11.83 10.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 32 ER10a ExonRegion 0 3.23 6.61 19.13 8.36 3.48 7.03 7.26 8.83 4.32 26.98 1.02 0.00 1.25 2.07 0.13 0.00 0.00 28.00 2.38 7.39 0.00 0.14 0.48 33 IG20_SR1 SilentIntergenicRegion 0 1.54 2.65 20.25 27.41 11.77 8.80 10.59 18.97 4.20 19.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.24 0.00 17.58 0.00 0.00 0.00