Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C15orf29 Gene 0 59.75 110.12 53.25 64.23 61.19 109.41 68.16 65.19 60.20 71.13 53.29 101.92 47.89 56.26 48.22 44.03 44.27 25.20 25.18 58.19 19.07 77.38 30.48 2 256544 Transcript 0 49.28 68.78 48.42 44.00 59.58 137.68 89.30 58.86 58.58 66.34 91.18 122.44 62.06 85.02 63.62 68.49 71.28 34.31 29.61 66.24 30.14 93.49 43.99 3 ER1a ExonRegion 0 54.42 176.75 11.05 8.15 31.92 129.66 85.64 6.53 18.21 14.79 44.16 8.79 3.67 56.43 31.91 47.02 50.05 18.53 19.01 30.03 40.16 43.85 34.51 4 E1a_E2a KnownJunction 0 14.00 100.38 7.21 5.39 15.28 24.08 3.84 7.93 11.95 16.20 24.37 30.31 20.13 16.66 4.45 15.64 21.97 4.64 9.22 18.22 41.82 5.63 3.93 5 I1_AR5 ActiveIntronRegion 0 1.14 2.62 1.96 4.14 8.62 0.59 10.66 5.81 5.14 4.59 1.45 22.70 6.75 0.76 3.70 3.19 3.54 2.08 1.03 8.45 2.13 0.89 5.36 6 ER2a ExonRegion 0 27.84 40.56 38.64 40.16 34.09 52.97 32.81 32.60 49.23 57.63 109.92 95.05 52.09 106.21 51.09 94.34 77.94 49.14 31.46 65.99 55.21 99.64 69.45 7 E2a_E3a KnownJunction 1 70.23 44.86 27.56 44.42 140.75 151.33 124.98 55.74 48.23 54.37 126.56 141.35 100.64 158.16 63.42 124.24 79.94 86.68 47.34 102.91 36.88 135.88 89.72 8 ER3a ExonRegion 0 41.81 76.98 42.92 63.56 110.82 255.52 185.16 81.79 66.21 71.95 124.93 171.28 80.19 131.32 71.82 97.21 73.10 66.83 43.27 83.08 48.91 130.65 64.68 9 E3a_E4a KnownJunction 0 35.12 142.54 49.44 72.48 144.14 454.40 326.19 90.08 71.87 78.57 108.87 137.44 70.77 114.90 56.12 86.30 60.40 36.19 34.54 95.75 57.39 112.12 46.35 10 ER4a ExonRegion 0 60.16 130.59 50.19 67.00 47.11 120.66 81.58 88.27 90.61 91.84 150.90 147.20 76.00 149.48 67.55 101.83 130.59 69.04 45.19 96.11 82.76 123.16 62.80 11 E4a_E5a KnownJunction 0 60.46 79.66 66.76 61.56 52.97 120.50 111.60 96.65 95.08 101.62 181.47 90.18 114.12 147.10 68.36 153.81 128.19 60.69 59.58 98.11 80.93 111.51 96.72 12 I4_AR1 ActiveIntronRegion 0 14.25 15.75 7.38 9.91 3.14 2.78 8.92 5.20 7.74 4.61 0.00 7.07 11.70 1.13 3.88 3.50 1.67 4.33 3.75 5.37 4.08 2.10 1.98 13 I4_SR1 SilentIntronRegion 0 12.63 11.96 6.54 11.01 3.93 3.03 5.72 4.02 4.90 4.24 0.89 3.79 4.69 0.67 4.56 3.55 3.64 5.57 2.34 4.89 2.23 2.30 1.89 14 ER5a ExonRegion 0 48.18 56.48 44.02 60.83 62.22 117.05 99.70 70.47 97.51 88.94 172.37 183.37 122.26 146.74 96.25 133.47 161.41 84.64 55.36 119.18 49.44 126.67 83.24 15 E5_Da NovelBoundary 0 13.41 51.83 11.80 46.15 30.65 36.57 51.01 31.96 50.32 35.46 73.86 82.08 58.44 56.39 37.46 51.95 34.69 58.08 9.13 39.18 49.42 57.44 61.72 16 E5a_E6a KnownJunction 1 46.08 18.42 31.58 23.94 33.28 66.95 46.15 48.34 50.66 50.34 95.97 86.28 41.56 16.36 44.87 34.86 109.58 18.07 7.53 44.61 11.06 30.74 33.04 17 I5_SR1 SilentIntronRegion 0 36.89 35.45 8.25 17.48 14.39 29.60 27.07 21.08 32.88 18.76 29.12 32.43 29.27 34.68 20.01 37.08 20.61 23.54 17.82 34.80 14.70 21.98 25.92 18 E6_Aa NovelBoundary 1 16.45 33.42 16.08 52.51 15.70 26.01 40.06 30.23 26.16 24.18 12.16 72.62 85.22 45.38 10.14 27.00 8.32 34.53 9.32 35.28 2.41 15.55 18.87 19 ER6a ExonRegion 1 31.54 27.39 30.85 28.86 14.69 77.77 33.36 36.37 45.63 49.70 84.59 60.36 27.50 27.71 35.84 31.70 79.74 21.12 11.43 43.55 5.79 33.13 21.65 20 E6_Da NovelBoundary 1 31.12 28.94 22.23 39.72 28.18 25.04 47.17 37.01 21.24 21.81 20.74 37.06 57.14 26.49 8.90 26.66 35.72 18.12 7.91 56.69 10.87 19.72 11.18 21 E6a_E7a KnownJunction 0 43.04 34.34 31.28 31.90 16.89 101.99 44.43 39.23 42.77 45.83 89.39 58.82 6.01 66.16 68.11 24.27 72.93 18.24 14.40 68.84 7.85 55.78 17.33 22 E7_Aa NovelBoundary 1 27.63 37.23 10.35 46.11 38.03 56.73 36.70 28.22 25.03 26.81 14.32 96.63 52.43 37.26 24.85 12.30 9.44 19.57 12.99 43.53 3.15 25.90 16.73 23 ER7a ExonRegion 0 69.94 43.36 45.87 30.63 29.97 107.40 62.30 41.89 51.48 66.49 105.92 108.72 41.48 98.57 80.46 48.68 91.58 22.36 28.60 59.57 14.91 108.76 36.54 24 E7_Da NovelBoundary 0 19.48 33.35 11.86 49.31 38.62 31.69 53.97 40.25 37.35 44.13 39.33 48.77 61.68 16.89 28.43 28.11 16.74 21.76 4.14 60.15 11.06 24.43 23.82 25 E7a_E8a KnownJunction 0 32.75 47.10 31.16 17.25 26.49 76.89 67.52 43.25 49.45 54.88 41.17 80.73 60.22 34.08 50.81 34.86 58.81 13.51 13.27 52.80 2.72 59.83 15.37 26 E8_Aa NovelBoundary 1 55.86 49.00 31.31 79.48 71.73 65.87 57.99 52.33 57.75 63.99 23.58 106.08 64.12 55.21 32.63 17.00 22.44 12.27 3.86 62.64 0.00 75.32 3.24 27 ER8a ExonRegion 1 44.66 46.21 52.34 30.36 49.17 174.44 86.97 46.98 51.30 64.04 46.05 166.16 56.12 49.84 65.15 46.76 27.10 18.79 18.62 46.05 7.15 79.45 24.60 28 E8_Da NovelBoundary 1 31.64 71.63 27.35 63.46 51.27 43.90 32.15 74.67 50.23 42.84 21.22 87.03 40.91 15.07 23.73 35.80 0.00 12.56 12.33 34.64 3.03 29.39 25.95 29 E8a_E9a KnownJunction 0 77.35 38.48 74.66 47.78 144.06 316.69 147.68 71.51 65.02 109.41 96.34 308.65 88.63 93.71 98.89 76.05 52.36 16.58 29.84 94.53 11.80 143.10 40.04 30 I8 Intron 0 39.89 96.19 16.42 24.77 26.04 27.33 26.10 25.71 18.36 18.95 9.53 29.51 38.43 19.78 17.28 15.74 4.47 7.49 7.06 15.99 2.71 17.19 3.26 31 I8_AR1 ActiveIntronRegion 0 39.99 96.43 16.46 24.83 26.10 27.40 26.16 25.77 18.41 18.99 9.55 29.58 38.52 19.83 17.32 15.78 4.48 7.51 7.08 16.03 2.72 17.23 3.26 32 E9_Aa NovelBoundary 1 81.79 179.31 27.41 34.49 58.32 57.75 55.29 29.90 46.18 28.45 6.63 37.36 92.36 36.02 25.96 7.43 16.36 3.48 0.00 29.34 2.35 33.00 0.00 33 ER9a ExonRegion 1 77.64 43.53 91.75 47.54 62.11 122.03 68.28 78.66 63.20 78.77 60.33 205.70 87.76 95.05 107.99 77.94 33.40 22.68 37.89 47.62 9.87 168.10 43.27 34 E9_Da NovelBoundary 1 3.48 25.59 20.34 23.04 33.19 46.39 81.70 25.71 6.60 19.47 2.11 12.90 35.06 14.77 30.41 0.00 0.00 5.68 7.25 23.91 0.00 2.57 0.00 35 E9a_E10a KnownJunction 0 37.12 34.53 134.74 78.51 45.84 42.31 25.88 112.09 87.04 92.46 49.43 159.65 91.39 81.23 109.15 51.35 29.27 12.02 36.80 41.42 4.94 147.88 35.68 36 I9 Intron 0 20.45 30.38 17.38 18.53 43.25 37.80 40.37 20.91 11.30 17.86 11.24 20.88 37.09 23.18 17.28 24.23 13.04 13.54 12.47 27.74 11.79 19.98 21.62 37 I9_SR1 SilentIntronRegion 0 20.77 26.75 19.89 22.34 37.79 27.29 37.56 25.83 13.89 19.72 10.62 25.65 50.84 26.82 23.39 24.36 12.11 11.60 8.93 33.95 6.18 15.95 14.88 38 I9_AR1 ActiveIntronRegion 0 20.12 36.35 23.18 23.12 74.55 60.96 63.46 25.22 13.25 26.85 15.60 24.05 47.84 25.00 17.26 31.29 18.01 17.43 15.19 27.54 21.66 28.89 36.91 39 I9_SR2 SilentIntronRegion 0 4.33 18.75 2.22 3.98 14.19 5.27 17.06 8.20 3.71 4.28 11.84 23.09 10.05 17.07 12.85 14.91 6.29 13.02 27.35 17.66 8.19 23.38 15.80 40 I9_AR2 ActiveIntronRegion 0 42.35 45.84 12.86 17.17 27.90 42.89 34.32 18.87 9.34 8.19 9.80 11.91 16.79 13.03 14.52 23.45 8.37 11.39 8.98 25.80 8.06 19.95 18.20 41 I9_SR3 SilentIntronRegion 1 8.09 21.21 12.01 9.48 16.91 25.25 14.05 10.84 8.27 10.60 5.73 10.84 12.82 27.23 6.80 16.62 14.65 16.12 17.72 21.94 10.64 11.95 12.11 42 I9_AR4 ActiveIntronRegion 0 9.99 9.60 0.00 0.00 0.00 0.00 7.50 0.00 0.00 0.00 3.65 16.84 10.94 10.35 16.23 5.56 0.00 0.00 0.00 18.05 0.00 5.86 2.72 43 E10_Aa NovelBoundary 1 109.43 126.23 93.94 105.11 94.65 76.55 58.87 101.74 52.81 86.60 30.48 26.71 72.56 43.32 47.59 36.14 11.41 29.64 27.58 110.64 6.30 81.56 20.83 44 ER10a ExonRegion 1 63.92 124.70 57.97 75.71 70.20 103.21 62.66 69.91 57.66 72.60 19.71 86.41 38.60 25.67 36.58 20.95 16.03 12.21 19.19 50.19 3.08 60.46 16.86 45 IG16_SR6 SilentIntergenicRegion 0 11.25 47.45 13.90 34.41 18.54 18.31 21.46 16.66 18.88 14.49 1.31 10.32 6.91 2.47 5.28 6.74 3.77 6.49 7.70 26.24 1.33 5.09 3.99 46 IG16_AR6 ActiveIntergenicRegion 0 3.59 23.00 7.56 16.97 10.43 8.42 19.56 13.31 9.62 5.94 2.15 3.59 5.76 0.72 2.98 7.25 5.53 6.87 1.57 9.20 1.62 2.30 2.18 47 IG16_AR5 ActiveIntergenicRegion 0 9.58 19.29 4.76 16.72 12.09 9.05 16.63 18.83 13.87 10.88 1.14 11.87 4.33 2.83 4.81 11.61 6.47 6.60 6.31 17.12 0.00 3.02 3.13 48 IG16_AR4 ActiveIntergenicRegion 0 7.03 27.19 8.11 24.96 16.13 15.02 21.79 16.62 18.84 9.51 2.32 13.20 10.00 2.66 6.65 6.66 5.10 9.67 9.48 17.84 1.96 3.22 4.42 49 IG16_AR3 ActiveIntergenicRegion 0 6.98 20.80 9.27 19.69 14.05 12.76 16.37 14.85 13.54 12.09 0.41 9.16 12.95 4.14 5.51 6.29 2.28 3.88 1.47 15.73 0.89 3.29 2.41 50 IG16_AR2 ActiveIntergenicRegion 0 7.64 26.91 8.79 22.96 20.60 13.68 13.70 6.82 3.98 19.34 11.62 26.53 29.62 17.08 23.24 16.44 11.91 1.55 5.36 10.24 2.65 4.01 4.95 51 IG16_AR1 ActiveIntergenicRegion 0 6.32 17.01 6.00 12.74 23.98 12.06 18.86 11.28 5.68 17.52 19.06 24.99 11.49 30.99 21.80 20.71 17.10 10.16 16.50 11.87 10.32 5.81 7.31