Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C15orf57 Gene 0 76.62 31.65 48.39 22.27 39.52 45.36 20.37 27.56 31.58 26.40 96.53 78.44 102.89 110.65 167.68 125.39 75.13 21.15 44.70 23.46 31.11 37.04 30.56 2 416810 Transcript 0 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 1.53 0.57 0.00 0.00 0.00 0.71 2.26 0.71 1.65 0.00 0.00 0.09 0.57 0.00 3.56 3 360470 Transcript 1 715.46 172.93 105.64 56.47 423.34 323.85 112.26 102.40 95.57 66.11 407.21 5.70 26.95 314.20 695.10 789.88 317.25 81.58 176.48 106.29 84.39 92.52 75.46 4 358005 Transcript 0 1.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.34 17.97 5 IG24_AR1 ActiveIntergenicRegion 0 1.00 0.00 0.00 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 11.61 0.00 2.91 0.00 3.00 0.00 0.00 0.00 0.00 6 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 ER1b ExonRegion 1 235.10 93.76 38.08 21.81 133.72 142.48 57.54 30.45 34.29 23.06 179.38 0.40 4.69 141.92 238.70 208.17 132.60 29.32 61.86 34.74 45.76 42.22 56.92 8 E1_Da KnownBoundary 0 54.31 0.00 3.49 1.76 10.10 8.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.45 0.00 0.00 0.00 4.42 0.00 0.00 32.03 38.16 9 E1a_E2a KnownJunction 1 715.46 172.93 105.64 56.47 423.34 323.85 112.26 102.40 95.57 66.11 407.21 5.70 26.95 314.20 695.10 789.88 317.25 81.58 176.48 106.29 84.39 92.52 75.46 10 ER1c ExonRegion 0 16.41 1.12 2.82 0.72 1.49 2.00 2.13 0.00 1.20 0.30 0.01 0.00 0.00 0.54 2.48 1.57 0.45 0.76 1.31 2.32 2.28 16.53 20.37 11 E1b_E2a KnownJunction 0 2.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42.68 35.94 12 E1c_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.18 13 ER1d ExonRegion 0 0.00 0.00 2.30 0.00 0.00 0.00 0.00 0.00 1.43 1.15 0.00 0.00 0.00 1.43 4.53 1.43 3.30 0.00 0.00 0.17 1.15 0.00 2.94 14 ER2a ExonRegion 0 107.07 28.09 85.14 43.01 80.25 78.75 25.43 58.07 75.06 54.77 223.63 91.34 74.42 185.97 326.93 327.14 179.19 51.69 79.40 51.08 65.76 69.34 58.26 15 E2a_E3a KnownJunction 0 36.08 27.10 97.36 45.48 333.70 327.71 67.66 45.88 56.34 61.54 239.01 187.41 199.01 247.75 282.22 106.81 113.70 42.53 61.65 32.41 73.02 74.46 67.78 16 E3_Aa NovelBoundary 0 20.74 12.50 29.18 17.71 105.52 141.34 28.26 15.61 16.46 28.90 81.65 68.12 42.69 59.63 27.44 28.28 42.36 14.14 48.19 9.72 27.49 30.00 22.71 17 ER3a ExonRegion 0 55.78 70.18 95.05 42.35 90.60 138.89 47.78 50.00 64.65 58.74 220.09 233.76 224.37 221.42 316.96 190.35 145.39 25.28 108.91 37.29 62.05 101.14 46.26 18 E3_Da NovelBoundary 1 91.94 3.35 8.60 4.76 0.00 21.35 5.83 4.15 5.06 10.48 35.22 37.81 41.23 9.30 62.06 4.27 56.85 4.89 0.00 8.82 3.15 13.90 18.87 19 E3a_E4a KnownJunction 0 104.46 53.02 134.94 42.59 15.87 25.44 7.82 77.75 66.87 70.59 265.38 232.58 257.45 177.12 288.89 206.10 179.80 30.97 124.71 31.19 41.33 63.01 56.85 20 Ix Intron 0 23.14 3.31 4.35 7.25 17.31 8.06 11.28 9.31 7.96 6.95 7.40 40.25 57.59 9.10 24.20 17.33 15.90 1.63 6.32 4.02 2.70 6.05 9.36 21 Ix_AR3 ActiveIntronRegion 0 8.81 2.12 0.00 3.17 8.33 2.86 3.44 2.68 3.83 2.67 2.01 20.81 14.07 9.65 13.20 3.09 1.72 4.32 1.66 1.11 1.15 2.17 6.11 22 Ix_SR2 SilentIntronRegion 0 22.18 2.97 3.85 6.35 15.90 6.53 11.20 8.04 7.92 6.43 9.11 47.78 63.50 8.89 24.99 14.84 14.72 0.87 5.80 3.53 1.38 8.14 5.35 23 Ix_AR2 ActiveIntronRegion 0 32.04 4.26 6.44 9.56 23.05 10.35 15.42 12.31 9.42 10.06 6.51 44.66 68.94 9.66 25.71 22.68 18.75 2.61 9.05 5.42 4.08 5.48 13.77 24 Ix_SR1 SilentIntronRegion 0 14.74 2.61 2.52 6.49 14.34 8.88 6.80 7.22 7.31 4.36 7.36 31.97 42.21 9.06 20.03 12.90 15.09 0.69 2.52 2.63 1.85 4.56 7.64 25 Ix_AR1 ActiveIntronRegion 0 11.21 2.60 3.09 4.95 9.07 6.72 5.71 9.29 5.29 2.56 6.51 12.23 31.98 7.56 27.18 20.80 18.21 0.94 5.74 4.12 5.04 3.73 13.17 26 E4_Aa NovelBoundary 0 6.89 0.00 4.46 6.46 4.33 0.00 1.94 25.34 5.96 6.21 6.63 26.56 32.14 4.53 4.45 19.74 46.10 0.00 0.00 2.43 8.77 4.96 15.96 27 ER4a ExonRegion 0 73.50 28.45 42.38 18.58 22.55 24.64 16.03 22.06 21.81 20.06 59.94 73.60 120.13 95.56 134.29 84.85 49.69 16.57 34.04 18.09 22.70 23.54 21.93 28 ER4b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00