Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 BMF Gene 0 43.69 11.50 22.04 44.89 28.73 43.83 15.09 24.47 23.77 23.75 374.42 134.00 84.04 262.07 85.40 244.60 165.46 15.11 16.79 8.40 22.64 24.75 54.13 2 354670 Transcript 0 3.61 0.37 1.49 2.88 1.28 6.59 2.38 3.41 1.82 2.71 13.61 5.74 7.99 36.08 11.37 37.18 14.54 2.08 1.13 1.65 3.76 5.27 7.50 3 397573 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 431415 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 2.47 0.00 4.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 397567 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 220446 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 ER1a ExonRegion 0 1.70 1.02 0.00 0.32 2.68 7.14 2.65 0.53 0.29 0.00 11.71 1.02 0.83 37.39 9.59 41.03 10.65 2.50 0.00 0.00 2.42 5.21 11.75 8 E1a_E2a KnownJunction 0 3.78 0.00 1.77 1.83 0.00 8.52 0.00 5.01 1.42 0.00 6.37 12.15 13.64 16.13 14.09 27.77 4.77 1.74 0.00 0.00 2.53 0.00 0.00 9 E2_Aa NovelBoundary 0 0.00 0.00 1.71 1.90 0.00 2.50 0.00 4.35 0.00 0.00 7.53 7.35 12.01 19.31 4.45 19.65 4.02 6.09 0.00 3.00 9.02 5.14 3.67 10 ER2a ExonRegion 0 2.45 0.81 1.70 5.53 1.07 3.61 3.07 2.70 2.48 5.77 25.01 9.84 11.87 58.65 17.11 38.29 25.69 3.61 0.85 1.73 8.35 6.27 5.16 11 E2a_E4a KnownJunction 0 3.78 0.00 3.16 5.36 0.00 9.99 1.77 7.68 4.92 7.01 19.16 5.70 13.64 64.45 15.08 69.90 31.60 2.57 4.80 6.52 5.50 14.88 17.67 12 I2 Intron 0 3.00 0.55 1.60 0.67 2.50 2.60 1.28 1.87 3.61 0.67 16.22 31.39 9.57 20.63 4.55 18.21 13.65 1.94 1.63 0.96 2.93 2.58 6.74 13 I2_SR1 SilentIntronRegion 0 3.17 0.61 1.65 0.66 2.93 2.34 1.48 2.15 3.81 0.76 16.76 27.92 9.34 20.93 5.03 18.26 13.91 2.27 1.19 1.20 3.36 2.61 6.42 14 I2_AR2 ActiveIntronRegion 1 0.00 0.00 1.21 0.00 1.25 15.82 0.98 0.28 8.45 0.00 30.15 114.59 18.76 33.11 3.09 23.01 15.71 1.01 2.93 0.00 1.07 4.74 12.60 15 I2_SR2 SilentIntronRegion 1 4.72 0.00 0.00 0.00 0.00 2.82 0.00 0.00 0.87 0.00 18.39 79.31 12.83 13.30 1.63 6.60 2.65 1.04 0.00 0.00 0.00 0.27 2.00 16 E3_Aa NovelBoundary 1 3.78 0.00 0.00 0.00 16.30 0.00 0.00 0.00 4.43 0.00 34.43 127.24 14.28 32.49 4.45 20.51 8.04 0.00 4.05 0.00 3.15 3.12 4.18 17 E3_Ab NovelBoundary 1 6.67 0.00 1.83 3.33 3.99 0.00 1.99 5.09 1.13 0.00 68.18 121.99 6.82 62.75 13.35 99.89 53.67 0.00 3.58 0.00 0.00 9.37 24.93 18 ER3a ExonRegion 1 0.39 0.00 0.00 2.02 0.00 0.00 0.00 0.38 0.41 0.00 21.83 47.78 0.00 22.20 6.23 31.59 23.11 0.00 0.94 0.00 0.00 5.63 4.68 19 ER3b ExonRegion 1 6.58 0.00 0.04 2.41 0.00 3.35 0.00 3.05 2.24 0.00 64.36 143.21 15.46 64.63 18.68 50.67 32.49 1.01 2.14 1.70 3.48 5.99 14.41 20 E3_Da NovelBoundary 1 3.33 0.00 9.34 3.86 0.00 9.77 2.25 0.00 8.19 4.84 61.70 229.57 33.93 31.55 17.80 33.15 47.59 0.00 0.00 0.00 4.82 3.12 11.78 21 E3a_E4a KnownJunction 1 0.00 0.00 0.00 0.00 0.00 7.33 0.00 3.90 1.59 0.00 55.07 13.35 26.46 38.67 0.00 22.56 17.86 2.57 0.00 0.00 0.00 0.00 0.00 22 I3 Intron 1 4.06 0.78 4.90 2.34 1.54 1.76 0.51 3.46 4.94 1.31 34.47 109.33 7.41 32.29 6.51 29.06 12.66 0.88 2.44 1.63 4.65 4.39 8.45 23 I3_AR1 ActiveIntronRegion 1 0.85 0.43 0.21 0.42 0.00 1.30 0.05 1.03 2.14 0.00 20.52 91.42 4.51 27.49 3.79 18.80 10.16 0.11 0.00 2.74 3.90 3.33 1.41 24 I3_SR1 SilentIntronRegion 1 4.91 0.88 6.12 2.84 1.94 1.89 0.63 4.10 5.70 1.65 38.38 115.23 8.22 33.90 7.27 31.99 13.45 1.09 3.08 1.38 4.90 4.72 10.30 25 ER4a ExonRegion 0 3.88 0.00 2.45 12.27 0.00 16.20 1.32 12.96 5.56 10.32 104.70 64.22 51.59 118.56 28.53 123.34 58.32 5.24 6.37 4.96 6.24 14.58 16.15 26 ER4b ExonRegion 0 10.67 1.07 9.05 15.79 5.15 20.92 5.34 13.88 16.87 18.20 198.61 75.58 60.44 208.32 46.22 185.32 125.01 9.47 9.76 4.10 19.45 17.03 34.02 27 E4a_E5a KnownJunction 0 14.08 0.00 6.27 27.50 3.23 21.24 16.83 6.65 24.88 23.18 129.82 30.46 19.64 168.17 40.92 147.48 109.86 17.99 16.75 3.00 11.24 14.45 31.33 28 E4a_E6a KnownJunction 0 0.00 0.00 3.43 1.50 0.00 0.00 0.00 2.51 1.42 3.49 21.37 6.30 0.00 52.33 5.32 29.74 22.63 5.64 8.56 0.00 0.00 5.14 11.35 29 ER5a ExonRegion 0 11.27 2.20 7.55 15.80 5.49 25.04 7.90 3.10 14.30 15.26 235.42 71.17 74.61 202.04 30.34 140.90 127.96 7.33 3.54 4.58 15.70 11.42 26.01 30 E5_Da KnownBoundary 0 7.19 0.00 6.68 25.70 16.04 45.09 9.89 8.71 18.11 13.94 341.56 60.02 134.73 257.34 57.73 246.86 162.51 22.14 9.51 12.72 5.62 16.59 63.00 31 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 2.47 0.00 4.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 ER5b ExonRegion 0 10.65 1.52 5.48 28.06 10.41 40.81 9.67 8.12 21.64 19.62 364.95 118.41 81.37 275.15 65.67 257.82 154.62 19.24 7.79 7.73 26.65 15.61 50.06 33 E5b_E6a KnownJunction 0 13.85 0.00 5.50 32.13 0.00 36.57 6.45 12.49 26.24 29.63 310.55 109.99 44.15 247.46 43.14 196.70 95.37 16.50 7.91 6.26 38.98 17.39 47.29 34 ER6a ExonRegion 0 18.44 3.03 13.73 30.27 14.76 36.03 13.28 13.84 29.23 20.80 385.75 104.41 81.71 305.13 60.37 213.94 162.21 15.41 17.68 6.28 27.82 18.12 44.53 35 E6_Da KnownBoundary 0 16.97 0.00 19.28 29.37 33.53 42.70 20.14 19.80 23.90 12.41 546.61 124.99 94.47 299.08 70.71 265.57 166.99 9.16 30.68 2.56 28.23 45.86 55.32 36 ER6b ExonRegion 0 52.23 14.02 25.89 52.39 34.42 49.83 17.31 28.50 26.24 26.43 420.76 150.00 92.72 283.78 97.37 270.38 182.16 16.75 19.15 9.57 24.31 27.75 60.76 37 ER6c ExonRegion 0 6.35 0.00 0.82 1.36 2.68 3.67 4.41 1.15 0.00 0.76 5.80 0.00 0.00 3.79 0.97 8.92 0.00 0.00 0.00 0.00 0.00 0.00 2.94 38 IG5_AR13 ActiveIntergenicRegion 0 14.60 20.22 12.98 29.76 28.93 26.50 6.34 16.83 16.70 21.84 3.94 6.57 4.86 6.33 6.02 4.53 4.79 7.68 14.10 13.89 6.71 7.26 6.39 39 IG5_AR12 ActiveIntergenicRegion 0 34.01 20.01 16.92 32.26 28.34 38.11 11.38 24.33 27.27 38.39 7.94 26.46 8.13 12.52 19.63 17.74 8.38 7.81 23.70 15.40 10.01 4.87 11.90 40 IG5_SR7 SilentIntergenicRegion 0 10.09 8.26 12.13 17.66 14.60 16.43 4.51 8.87 18.22 16.88 4.80 11.74 3.80 11.75 5.77 12.17 5.77 6.36 14.29 12.75 8.59 3.55 7.32 41 IG5_AR11 ActiveIntergenicRegion 0 11.82 20.11 12.62 16.96 17.31 8.59 11.00 9.15 12.83 9.08 5.92 11.00 7.94 19.70 18.68 15.93 10.33 15.22 15.94 23.65 9.37 4.91 8.62 42 IG5_AR10 ActiveIntergenicRegion 0 6.35 13.17 10.56 7.79 9.43 6.29 8.83 9.30 8.53 9.83 2.02 4.33 0.00 22.43 8.57 22.64 13.20 28.42 13.04 21.99 10.49 0.00 7.13 43 IG5_SR6 SilentIntergenicRegion 0 9.35 7.49 10.69 8.15 8.01 1.80 6.13 5.02 7.33 12.02 4.90 2.35 4.65 16.88 10.88 23.41 10.76 19.67 16.69 15.28 8.72 1.58 7.22 44 IG5_AR9 ActiveIntergenicRegion 0 5.77 8.50 15.48 7.81 6.32 1.83 2.65 5.19 6.74 12.09 3.16 12.99 0.00 22.74 10.02 31.34 15.90 17.30 27.80 16.25 13.82 2.08 10.95 45 IG5_AR8 ActiveIntergenicRegion 0 3.83 3.66 8.64 7.79 5.02 4.57 3.75 4.12 11.87 14.62 4.88 7.11 2.09 13.98 10.83 17.17 11.39 15.32 12.29 18.30 9.03 2.49 7.26 46 IG5_AR7 ActiveIntergenicRegion 0 0.00 6.23 2.93 3.17 0.00 10.23 3.84 5.19 10.36 9.95 9.10 0.00 0.00 12.73 2.90 6.90 10.22 13.59 10.79 12.56 8.46 0.27 7.67 47 IG5_SR5 SilentIntergenicRegion 0 2.24 5.88 9.21 7.40 5.30 8.95 3.50 7.95 10.72 12.33 5.49 6.18 4.50 14.91 9.78 13.83 6.35 15.06 13.98 17.74 11.08 3.80 6.68 48 IG5_AR6 ActiveIntergenicRegion 0 2.24 6.35 9.76 7.56 4.48 6.21 4.65 6.16 14.78 8.05 5.18 13.51 5.81 17.56 5.87 12.65 4.33 11.52 12.72 14.86 7.21 2.68 7.87 49 IG5_SR4 SilentIntergenicRegion 0 4.83 7.10 7.17 5.80 8.37 6.40 5.04 6.36 9.19 5.26 4.66 4.95 2.45 11.75 7.94 15.87 6.94 8.95 11.36 14.22 8.94 3.31 6.07 50 IG5_SR3 SilentIntergenicRegion 0 6.17 3.67 5.32 4.74 6.33 4.99 6.27 4.17 7.47 6.97 3.23 8.31 3.68 12.96 6.69 13.80 4.97 6.94 13.32 10.97 5.12 1.62 6.10 51 IG5_AR3 ActiveIntergenicRegion 0 13.16 7.63 2.11 2.04 16.31 8.83 10.30 1.67 0.93 3.40 3.68 0.00 0.00 18.02 17.59 16.53 8.56 2.66 2.19 8.31 5.99 2.93 1.93 52 IG5_AR2 ActiveIntergenicRegion 0 13.82 16.89 2.45 2.73 22.15 28.47 20.41 1.73 1.24 3.44 6.93 0.00 0.00 11.23 26.11 30.13 23.75 3.13 8.85 7.21 11.94 7.81 8.24