Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RPAP1 Gene 0 28.79 41.00 110.13 71.52 26.41 60.86 35.40 51.79 40.87 163.42 84.72 37.92 31.35 118.14 90.55 103.95 118.37 107.24 89.88 95.25 76.72 41.44 45.97 2 304330 Transcript 0 28.94 40.59 95.63 62.30 25.31 60.75 38.23 48.78 40.02 160.08 84.40 35.80 32.93 120.53 84.81 111.07 122.05 115.17 99.82 99.93 75.80 39.80 48.08 3 ER1a ExonRegion 1 29.32 32.49 30.17 22.43 29.93 62.16 34.17 19.45 14.00 71.11 69.30 5.32 8.50 68.55 87.28 169.66 89.88 121.80 205.79 76.73 37.00 24.74 121.87 4 E1_Da NovelBoundary 0 14.45 9.34 3.43 5.39 15.87 36.57 43.85 2.51 1.68 3.20 2.68 0.00 6.33 2.30 17.80 8.46 4.77 14.09 32.94 18.15 6.18 0.00 8.62 5 E1a_E2a KnownJunction 1 105.35 101.36 77.53 60.57 89.81 157.24 101.93 56.60 42.13 180.73 173.62 11.85 27.11 131.79 185.55 436.30 228.42 318.20 577.24 218.47 94.64 71.46 322.93 6 ER2a ExonRegion 0 8.80 10.23 54.51 36.29 9.63 21.10 10.75 33.96 24.53 113.41 62.57 10.68 8.81 57.90 57.58 102.04 80.24 108.44 138.62 94.79 56.42 21.56 74.68 7 E2a_E3a KnownJunction 0 0.00 25.46 69.69 36.56 43.80 47.25 28.62 21.77 28.99 95.76 71.76 31.51 6.82 74.64 59.34 52.72 87.98 103.55 78.68 82.45 73.52 21.86 22.19 8 ER3a ExonRegion 0 11.58 32.11 66.88 37.59 25.55 57.99 37.68 29.55 40.24 96.67 75.73 27.78 18.45 95.09 54.40 61.44 91.76 58.79 56.01 99.07 65.65 25.97 33.45 9 E3a_E4a KnownJunction 0 42.82 55.19 84.00 48.88 15.79 47.36 44.47 30.56 51.21 118.17 94.44 36.91 33.60 137.91 108.54 127.23 110.61 77.39 141.09 95.88 72.84 37.35 69.14 10 ER4a ExonRegion 0 26.60 32.51 73.51 40.89 10.88 37.16 34.11 38.97 45.62 129.88 69.35 44.64 20.38 118.27 62.92 97.98 95.54 75.39 65.69 117.42 80.53 32.32 37.07 11 E4a_E5a KnownJunction 0 24.89 39.80 67.77 55.57 11.04 37.59 45.05 44.20 32.09 121.34 76.12 24.31 13.31 123.08 51.92 101.43 143.15 100.07 60.80 115.37 70.43 40.90 25.10 12 I4_SR2 SilentIntronRegion 1 3.66 4.24 9.03 2.30 8.40 4.89 5.80 4.39 6.22 7.57 2.26 19.56 1.82 2.24 5.80 3.66 9.38 7.12 7.52 8.47 2.06 3.53 0.00 13 ER5a ExonRegion 0 20.19 32.89 72.31 53.97 21.85 43.37 45.52 40.44 36.41 133.23 82.17 41.58 24.57 139.53 66.70 110.24 139.78 79.53 70.50 124.00 89.82 40.57 47.08 14 E5a_E6a KnownJunction 0 25.34 17.69 87.70 54.24 3.23 16.81 38.77 47.97 30.56 143.04 53.01 38.71 18.83 132.62 62.18 88.95 123.42 104.75 79.91 123.49 67.46 25.35 69.74 15 E6_Aa NovelBoundary 0 2.74 9.47 12.36 5.56 10.36 8.69 20.31 6.45 6.60 10.83 2.26 6.15 0.00 0.00 4.45 7.26 0.00 7.09 4.61 14.83 6.30 2.69 0.00 16 ER6a ExonRegion 0 11.13 29.97 80.82 49.51 22.62 54.38 39.94 46.02 35.59 159.08 78.77 35.69 21.72 127.30 58.31 97.36 133.21 88.36 86.64 112.37 88.46 39.81 41.05 17 E6a_E7a KnownJunction 1 10.30 36.77 73.68 34.16 17.74 33.05 55.91 40.83 28.67 188.76 64.65 62.72 47.56 144.51 51.18 68.19 90.51 46.01 95.25 112.11 43.43 33.80 36.02 18 ER7a ExonRegion 0 13.89 27.92 72.98 44.30 12.89 50.50 33.03 31.32 48.64 173.97 85.33 42.91 23.61 123.43 48.06 86.60 117.64 96.78 79.78 101.63 76.79 38.01 34.99 19 E7a_E8a KnownJunction 0 20.89 19.08 75.87 50.11 27.16 74.96 41.38 29.41 47.40 183.52 76.91 45.16 19.32 137.62 51.92 132.61 136.42 145.83 153.32 123.17 102.55 52.72 55.06 20 ER8a ExonRegion 0 16.33 30.50 74.64 41.34 22.12 74.77 27.78 40.59 38.25 159.60 88.98 43.48 14.39 123.67 61.98 93.03 128.42 119.80 94.96 86.79 97.23 31.09 48.48 21 E8a_E9a KnownJunction 0 9.63 35.45 64.81 39.86 4.33 73.65 38.38 33.60 37.82 152.09 51.64 18.16 32.79 69.57 49.82 119.37 115.75 132.28 69.84 84.24 77.96 25.35 42.25 22 ER9a ExonRegion 0 17.68 34.06 75.75 34.64 10.84 47.86 39.14 34.62 35.63 137.48 62.05 24.36 14.92 111.57 49.29 110.93 117.13 79.49 72.17 102.69 74.33 35.23 39.57 23 E9a_E10a KnownJunction 1 13.04 19.40 64.84 43.48 15.11 49.46 40.94 55.04 28.50 134.28 82.23 30.01 0.00 118.96 69.35 121.59 152.97 131.41 98.64 94.66 72.77 34.90 48.32 24 ER10a ExonRegion 0 11.12 29.91 66.30 49.63 25.21 63.50 40.54 52.50 37.49 135.93 89.96 25.98 14.16 127.11 73.87 124.07 138.41 135.50 101.68 106.82 66.11 44.92 57.29 25 E10a_E11a KnownJunction 0 23.49 20.79 79.83 55.80 23.43 48.49 30.60 50.03 42.30 135.95 64.38 54.77 40.58 111.96 82.08 122.36 136.70 118.18 97.60 128.98 64.31 51.99 52.16 26 ER11a ExonRegion 0 16.44 25.90 79.94 56.19 13.55 59.28 32.78 61.02 37.55 146.91 87.54 36.39 24.46 125.79 85.54 107.10 143.71 99.65 90.82 125.57 81.98 46.54 47.81 27 E11a_E12a KnownJunction 0 24.37 37.95 77.38 66.09 27.33 66.33 45.40 68.51 37.09 143.55 79.60 55.67 37.98 102.48 59.46 103.31 125.29 128.80 94.87 111.98 92.97 42.74 49.77 28 ER12a ExonRegion 0 18.11 36.97 80.38 71.40 34.73 67.80 45.43 61.87 39.82 150.83 108.98 37.40 27.88 149.03 77.34 111.82 134.04 143.02 107.29 93.07 100.34 53.59 47.16 29 E12a_E13a KnownJunction 1 13.04 27.96 147.27 77.85 20.46 84.78 31.71 62.43 41.72 178.87 99.29 11.85 40.26 139.80 37.95 65.20 120.71 163.70 82.07 91.53 91.12 46.97 46.61 30 ER13a ExonRegion 0 12.23 25.70 111.47 63.05 21.03 52.41 24.09 56.27 41.94 166.39 96.20 35.69 25.12 129.29 69.29 86.21 122.08 102.23 64.75 82.87 86.14 35.54 33.96 31 E13a_E14a KnownJunction 0 14.22 57.29 144.64 80.08 53.65 69.96 26.94 71.26 33.22 202.24 91.23 29.71 40.26 182.24 76.89 156.97 134.08 164.28 136.38 103.03 82.97 71.52 41.40 32 ER14a ExonRegion 0 22.61 32.95 92.48 65.84 29.48 79.72 41.58 46.70 37.67 189.18 90.47 39.55 33.32 136.95 84.17 136.42 125.61 127.00 120.37 88.20 81.29 48.19 47.88 33 E14_Da NovelBoundary 0 12.45 5.13 20.58 7.56 0.00 34.01 7.73 3.94 4.20 13.03 20.58 5.85 0.00 21.37 19.78 27.86 47.97 31.01 27.20 32.98 34.41 12.68 23.13 34 E14a_E15a KnownJunction 1 17.04 15.13 77.64 84.27 11.38 61.39 36.21 30.03 37.27 172.70 68.70 12.00 32.63 133.79 28.93 132.70 105.94 104.38 102.40 91.15 64.31 34.11 20.66 35 ER15a ExonRegion 0 18.70 24.39 70.28 55.79 14.89 43.70 23.78 39.22 32.24 163.64 68.04 40.55 39.75 118.64 74.92 94.04 94.62 117.43 95.28 95.93 73.00 32.66 44.72 36 E15a_E16a KnownJunction 1 14.22 29.07 87.87 62.66 23.26 47.53 33.17 41.81 33.28 158.06 44.91 29.71 76.13 125.38 66.01 75.54 62.83 90.70 61.27 86.22 34.78 26.88 24.67 37 ER16a ExonRegion 0 38.00 35.58 93.23 67.86 26.76 54.62 39.42 50.71 40.98 182.59 83.70 38.88 53.21 135.39 85.63 96.08 117.32 153.50 86.45 99.96 73.87 47.95 45.58 38 E16_Da NovelBoundary 0 20.89 11.91 18.33 5.93 3.90 8.69 8.13 2.55 6.25 5.37 0.00 7.65 0.00 0.00 0.00 8.12 0.00 3.77 0.00 2.43 3.03 0.00 8.71 39 E16a_E17a KnownJunction 0 29.41 57.29 122.35 85.87 11.12 78.25 45.31 58.28 56.22 208.96 114.03 24.61 62.33 171.70 119.29 122.02 190.18 151.43 60.43 124.00 110.03 44.76 43.45 40 ER17a ExonRegion 0 19.89 31.79 110.90 60.12 17.82 60.83 35.16 44.85 50.63 190.17 97.83 33.14 36.34 148.07 91.29 99.54 136.32 159.37 79.37 86.80 98.98 50.54 46.83 41 E17a_E18a KnownJunction 0 9.78 34.53 94.97 71.05 19.02 47.08 28.62 43.21 39.06 210.52 134.35 36.46 87.33 195.77 131.78 110.14 136.23 167.76 68.52 93.19 84.88 48.93 34.66 42 ER18a ExonRegion 0 8.79 25.09 80.87 52.25 11.58 35.61 22.40 48.59 41.87 179.01 91.60 32.20 41.06 122.86 102.47 75.84 130.96 110.06 77.46 79.65 95.34 57.71 31.16 43 E18a_E19a KnownJunction 0 26.38 39.66 108.45 60.03 29.63 64.05 35.90 66.79 60.07 239.85 94.87 51.47 33.11 166.17 90.98 145.94 167.46 142.64 78.21 103.10 89.76 66.93 34.91 44 E19_Aa NovelBoundary 0 6.82 3.35 6.03 5.33 0.00 0.00 7.73 10.31 2.69 6.10 2.47 0.00 20.13 0.00 8.90 11.62 4.68 12.89 9.60 10.74 2.41 0.00 7.94 45 ER19a ExonRegion 0 32.71 34.26 95.62 52.48 23.67 64.81 34.05 59.15 41.53 203.92 100.10 39.43 45.42 139.38 96.41 115.15 143.89 133.60 105.86 79.44 81.99 46.27 44.18 46 E19a_E20a KnownJunction 0 53.05 35.85 68.06 41.59 20.20 38.10 30.21 61.69 49.80 167.35 68.86 38.56 26.78 62.04 56.62 61.86 96.49 63.76 30.31 52.67 76.11 21.92 4.18 47 E20_Aa NovelBoundary 0 7.11 0.00 30.07 26.34 14.43 7.84 15.68 6.90 12.07 14.80 2.68 0.00 7.95 15.30 14.96 7.43 15.90 33.70 21.93 20.90 5.99 8.88 11.61 48 ER20a ExonRegion 0 33.12 44.57 91.13 50.90 22.26 46.00 24.62 43.36 41.22 149.96 86.18 48.73 27.25 106.54 82.79 92.17 118.01 92.46 70.18 67.68 61.50 37.05 31.04 49 E20_Da NovelBoundary 0 28.60 12.70 28.95 26.20 7.89 5.22 3.84 18.69 17.22 26.00 17.06 0.00 0.00 30.61 8.90 8.12 18.70 48.96 13.74 19.69 10.69 10.84 16.90 50 E20a_E21a KnownJunction 0 19.34 26.90 77.23 55.20 11.12 20.39 18.20 44.52 41.15 140.38 46.64 37.21 25.97 63.04 77.01 29.56 63.30 50.53 30.12 42.25 48.31 25.66 14.94 51 I20 Intron 0 16.91 6.69 26.18 17.66 5.66 8.62 15.56 8.47 5.62 18.88 14.54 5.03 11.09 13.38 12.15 15.37 22.50 25.03 11.98 6.50 8.29 5.88 13.11 52 I20_AR1 ActiveIntronRegion 0 17.07 6.75 26.42 17.82 5.71 8.70 15.70 8.55 5.68 19.05 14.67 5.07 11.19 13.51 12.25 15.51 22.71 25.25 12.09 6.56 8.36 5.93 13.24 53 E21_Aa NovelBoundary 0 10.45 6.05 30.93 18.51 12.39 10.73 12.72 13.97 4.51 36.26 8.05 0.00 0.00 7.42 5.81 7.78 13.00 23.38 13.46 17.32 13.78 18.61 3.33 54 ER21a ExonRegion 0 22.82 45.32 129.76 71.63 22.60 61.95 33.07 48.46 45.07 188.45 96.77 54.74 60.31 114.42 105.60 114.13 117.91 126.20 84.85 85.95 88.78 43.01 34.91 55 E21_Da NovelBoundary 1 20.15 5.79 25.31 32.80 4.33 2.67 9.58 23.95 11.14 38.52 6.90 6.30 33.28 17.31 9.27 19.57 17.20 25.12 8.85 18.54 21.62 7.78 11.61 56 E21a_E22a KnownJunction 0 30.30 53.02 132.14 75.55 28.61 75.70 41.82 64.94 46.79 230.66 105.40 91.23 41.23 112.78 107.18 146.29 100.89 157.11 110.59 116.90 99.77 42.37 20.23 57 I21_SR1 SilentIntronRegion 0 6.10 9.96 13.68 17.53 9.24 10.04 11.06 11.13 5.30 12.80 5.01 11.50 14.79 9.63 7.67 9.42 14.27 15.35 3.67 6.13 8.89 6.00 5.92 58 E22_Aa NovelBoundary 0 14.08 15.79 50.12 45.55 7.64 15.79 32.95 10.19 5.87 47.20 9.00 5.55 20.29 17.25 0.00 8.12 17.11 34.41 36.05 14.70 17.17 16.10 15.37 59 ER22a ExonRegion 0 30.61 48.00 159.46 88.66 21.81 73.60 34.42 54.83 44.93 189.89 88.09 44.31 46.32 127.73 114.41 114.52 128.97 106.31 82.10 86.50 82.49 43.86 43.75 60 E22_Da NovelBoundary 0 10.15 18.09 21.44 28.57 0.00 10.39 6.36 10.60 5.21 11.44 0.00 0.00 0.00 16.19 4.45 0.00 8.70 15.92 12.52 22.56 8.34 3.12 16.05 61 E22a_E23a KnownJunction 0 54.31 56.04 147.90 114.80 23.60 68.88 31.09 45.63 43.84 185.43 90.81 30.76 59.57 96.12 166.14 83.40 168.40 118.31 80.85 101.76 89.02 18.92 28.85 62 I22 Intron 0 11.56 18.04 21.64 30.75 18.59 32.99 14.54 11.35 8.91 21.21 6.96 9.05 8.80 12.40 11.08 10.33 9.63 14.59 10.87 18.09 4.65 7.50 9.66 63 I22_SR1 SilentIntronRegion 0 1.59 7.47 14.44 17.87 9.06 23.52 7.54 7.05 3.25 14.52 4.27 4.55 4.42 14.72 6.68 6.12 9.44 8.49 9.31 7.57 2.50 5.58 5.14 64 I22_AR2 ActiveIntronRegion 0 5.46 24.97 22.50 35.85 15.62 27.02 14.43 10.98 17.15 32.60 11.17 12.55 13.41 20.87 12.15 8.82 13.00 14.68 10.00 19.22 1.93 7.32 10.90 65 I22_AR3 ActiveIntronRegion 0 13.74 26.30 20.32 34.91 32.58 44.00 23.39 10.59 10.20 23.41 7.49 8.75 8.77 10.39 8.79 7.79 6.62 7.41 9.31 17.65 5.42 5.63 9.58 66 I22_AR5 ActiveIntronRegion 0 23.76 17.60 33.75 40.38 16.89 41.18 14.25 18.08 9.46 22.39 8.14 13.11 11.23 11.51 18.84 18.77 13.13 30.08 17.88 29.37 8.25 13.16 15.11 67 E23_Aa NovelBoundary 0 44.82 35.06 53.87 48.21 12.22 18.68 13.56 17.79 8.65 17.41 4.95 11.70 6.82 9.71 18.17 3.76 8.88 26.94 14.21 26.59 22.98 11.39 30.05 68 ER23a ExonRegion 0 66.20 70.42 157.87 106.80 55.59 89.41 56.35 64.17 41.96 160.37 85.15 40.38 33.33 109.89 139.03 123.75 115.49 121.47 93.38 93.42 79.98 30.41 53.44 69 E23_Da NovelBoundary 0 36.52 15.46 22.59 30.13 23.60 23.28 18.99 10.23 5.73 30.03 13.95 6.30 28.24 4.65 5.32 20.42 3.93 33.70 20.80 29.91 8.40 10.96 11.87 70 E23a_E24a KnownJunction 0 111.50 94.52 151.95 79.58 61.21 116.92 49.46 64.53 42.53 134.23 90.18 37.51 46.59 111.25 122.38 107.41 122.11 54.64 92.14 89.16 41.27 24.68 44.22 71 I23 Intron 0 16.77 11.21 15.73 13.30 5.53 6.95 6.84 10.65 8.88 13.55 0.67 5.97 2.95 6.72 8.64 6.15 7.96 8.54 18.66 11.73 7.58 3.59 10.12 72 I23_AR1 ActiveIntronRegion 0 17.00 11.37 15.95 13.48 5.61 7.05 6.93 10.80 8.99 13.73 0.68 6.05 2.99 6.81 8.76 6.23 8.07 8.66 18.92 11.89 7.68 3.62 10.26 73 E24_Aa NovelBoundary 0 44.08 14.73 37.17 38.19 36.25 22.37 13.56 20.09 10.16 28.42 9.48 6.30 6.82 19.60 12.49 13.07 13.56 27.61 0.00 44.42 9.39 2.82 15.02 74 ER24a ExonRegion 0 79.48 89.07 148.54 83.77 50.21 83.87 63.57 58.71 40.92 129.71 69.52 34.27 42.99 110.71 149.22 104.17 114.49 64.61 82.13 105.04 55.17 41.05 44.83 75 E24_Da NovelBoundary 0 13.19 5.46 3.05 3.26 0.00 0.00 0.00 2.22 1.65 1.02 0.00 6.15 0.00 2.24 8.90 4.27 0.00 1.78 0.00 3.26 0.00 0.00 0.00 76 E24a_E25a KnownJunction 1 72.16 110.70 148.84 112.97 32.60 92.50 57.28 68.27 47.83 148.87 104.24 12.60 32.95 101.36 135.24 113.13 93.41 110.18 111.63 113.77 45.53 39.13 23.73 77 ER25a ExonRegion 0 67.00 79.38 183.51 148.34 57.84 72.83 42.53 82.96 46.66 167.11 79.18 42.86 24.15 92.04 129.35 94.00 91.68 76.75 86.68 104.62 50.20 50.17 47.70